prot_L-elsbetiae_contig899.17991.1 (polypeptide) Laminarionema elsbetiae ELsaHSoW15

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_L-elsbetiae_contig899.17991.1
Unique Nameprot_L-elsbetiae_contig899.17991.1
Typepolypeptide
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Sequence length507
Homology
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BLAST of mRNA_L-elsbetiae_contig899.17991.1 vs. uniprot
Match: D7FWM3_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FWM3_ECTSI)

HSP 1 Score: 496 bits (1278), Expect = 3.430e-162
Identity = 350/535 (65.42%), Postives = 379/535 (70.84%), Query Frame = 0 
Query:    1 MQRRGLGPDEVCTAMAMNTCVSAQQPLRALDLFRDMRDVGRVFPRLSSVTALLEAYAVLGRWEDALVELRALSASGVKPDGRAIAYVMAACNSSKKWDQTLSLHQYAIKMGIDSSMEGLVLVARAYGARKDWQAVVRVLATAEEACSXXXXXXXXXXXXXXXXXXXXXXXXKHPPVELYDVVARALALAGKWEEAASAVRRLENLPPRKIRQQRGDTPAAPAAARTSAAGLGTYEMVMGAALKAGRYDAVLAQADAARAALRVAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTNELNPAALAHEAAAAGRLGQWDRVSPLVAKAMRSPDLRGIAGARLYSALISAAAACGKPRRGLEVFQEMVEE------------------------------GGV----------GXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAS--------LAIGVTKDXXXXXXXXXXXXXXXDGGQARKPRLSTWRLAEVLSKAGEVCAAAGKDSTAEALAAKAVQLVGGGEA 487
            MQRRGLGPDEVCTAMAMNTCV+AQQPLRALDLFRDMRDVGRVFPR+SSVTALLEA+A LGRWEDALVELRALSASGVKPDGRAIA+ MAACN+++KW+QT+SL+ YA+KMGI+SSMEGLVLVARAYGA KDWQAV+ VLATAEEACSXXXXXXXXXXX             KHPP ELY+V AR+LALAG WEEAASAVRRLE L PRK R+  G      AAARTSAAGLGTYEM++GAAL AG ++AVLAQADAARAALR A                                   ELNP ALAHEAAAAGRLGQWDRVSPL+AKAMRSPDLRG+AG RLY+ALI+AAAACGKPRRGLEVFQEMVEE                              GGV          G               XXXXXXXXXXXXX         A+        LAIGVTKD XXXXXXXXXXXXXX    A+KPRLS+ +LA VLSKAGEVCAA GK+STA ALAAKA QLVG  EA
Sbjct:  542 MQRRGLGPDEVCTAMAMNTCVAAQQPLRALDLFRDMRDVGRVFPRISSVTALLEAHAALGRWEDALVELRALSASGVKPDGRAIAFAMAACNAARKWEQTISLYHYALKMGIESSMEGLVLVARAYGAGKDWQAVLGVLATAEEACSXXXXXXXXXXXRGGERAAAVPAV-KHPPAELYEVAARSLALAGMWEEAASAVRRLEKLSPRKTREGAG------AAARTSAAGLGTYEMILGAALAAGCFEAVLAQADAARAALRDASSSPSSSSGYDHGASQGGQGRGGGGG-------VRELNPGALAHEAAAAGRLGQWDRVSPLLAKAMRSPDLRGVAGCRLYAALITAAAACGKPRRGLEVFQEMVEESRSGXXXXXXXXXXXXVDAAVLGAAAAVVSGGVEWSDSMSGEDGTTGEVAMEEAFSRSGXXXXXXXXXXXXXTFLAALDACAAVGGEESVTLAIGVTKDAXXXXXXXXXXXXXXXXXDAKKPRLSSRQLAAVLSKAGEVCAAVGKESTAIALAAKAEQLVGEAEA 1062
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig899.17991.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FWM3_ECTSI3.430e-16265.42Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR002885Pentatricopeptide repeatPFAMPF01535PPRcoord: 344..371
e-value: 1.2E-4
score: 22.1
IPR002885Pentatricopeptide repeatTIGRFAMTIGR00756TIGR00756coord: 343..371
e-value: 4.3E-4
score: 18.3
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 340..374
score: 8.901
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 175..205
score: 6.062
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 80..114
score: 5.941
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 9..43
score: 6.577
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 45..79
score: 8.374
IPR011990Tetratricopeptide-like helical domain superfamilyGENE3D1.25.40.10coord: 1..171
e-value: 3.3E-20
score: 74.8
IPR011990Tetratricopeptide-like helical domain superfamilyGENE3D1.25.40.10coord: 304..479
e-value: 3.5E-7
score: 31.9
NoneNo IPR availablePANTHERPTHR46128FAMILY NOT NAMEDcoord: 1..114

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig899contigL-elsbetiae_contig899:23037..30897 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig899.17991.1mRNA_L-elsbetiae_contig899.17991.1Laminarionema elsbetiae ELsaHSoW15mRNAL-elsbetiae_contig899 22321..31107 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_L-elsbetiae_contig899.17991.1 ID=prot_L-elsbetiae_contig899.17991.1|Name=mRNA_L-elsbetiae_contig899.17991.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=507bp
MQRRGLGPDEVCTAMAMNTCVSAQQPLRALDLFRDMRDVGRVFPRLSSVT
ALLEAYAVLGRWEDALVELRALSASGVKPDGRAIAYVMAACNSSKKWDQT
LSLHQYAIKMGIDSSMEGLVLVARAYGARKDWQAVVRVLATAEEACSSAA
AAAAAAAGSNNHGGGAAAAAAKHPPVELYDVVARALALAGKWEEAASAVR
RLENLPPRKIRQQRGDTPAAPAAARTSAAGLGTYEMVMGAALKAGRYDAV
LAQADAARAALRVAAASAPSPSSDFDNDGSSSSSSSRGDGGGGGGGGTNE
LNPAALAHEAAAAGRLGQWDRVSPLVAKAMRSPDLRGIAGARLYSALISA
AAACGKPRRGLEVFQEMVEEGGVGGGDGEAGGAGGRRLPPPDGATFLAAL
DACAAVGGEESASLAIGVTKDAAAAARELQEGGGGSDGGQARKPRLSTWR
LAEVLSKAGEVCAAAGKDSTAEALAAKAVQLVGGGEAAAPLSTSSPAVVA
QEEDGL*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR002885Pentatricopeptide_repeat
IPR011990TPR-like_helical_dom_sf