mRNA_L-elsbetiae_contig8881.17905.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig8881.17905.1
Unique NamemRNA_L-elsbetiae_contig8881.17905.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig8881.17905.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig8881contigL-elsbetiae_contig8881:5124..7372 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size314
Cds size309
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig8881.17905.1prot_L-elsbetiae_contig8881.17905.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig8881 5124..7368 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816965.32047-CDS-L-elsbetiae_contig8881:5123..53751622816965.32047-CDS-L-elsbetiae_contig8881:5123..5375Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig8881 5124..5375 -
1691683946.8517177-CDS-L-elsbetiae_contig8881:5123..53751691683946.8517177-CDS-L-elsbetiae_contig8881:5123..5375Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig8881 5124..5375 -
1622816965.3309746-CDS-L-elsbetiae_contig8881:7311..73681622816965.3309746-CDS-L-elsbetiae_contig8881:7311..7368Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig8881 7312..7368 -
1691683946.8627856-CDS-L-elsbetiae_contig8881:7311..73681691683946.8627856-CDS-L-elsbetiae_contig8881:7311..7368Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig8881 7312..7368 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816965.3415232-UTR-L-elsbetiae_contig8881:7368..73721622816965.3415232-UTR-L-elsbetiae_contig8881:7368..7372Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig8881 7369..7372 -
1691683946.8752115-UTR-L-elsbetiae_contig8881:7368..73721691683946.8752115-UTR-L-elsbetiae_contig8881:7368..7372Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig8881 7369..7372 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig8881.17905.1

>prot_L-elsbetiae_contig8881.17905.1 ID=prot_L-elsbetiae_contig8881.17905.1|Name=mRNA_L-elsbetiae_contig8881.17905.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=103bp
MSQQSRSVGDSASITVMPAPETEPSVFSAPSPWHPANTAPAAASVAGVAT
RVAESRNAHSTNNSNSKLGKGKIVHGRNNNGSSSSTTTTTSHHQQAAGTA
TAS
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mRNA from alignment at L-elsbetiae_contig8881:5124..7372-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig8881.17905.1 ID=mRNA_L-elsbetiae_contig8881.17905.1|Name=mRNA_L-elsbetiae_contig8881.17905.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=2249bp|location=Sequence derived from alignment at L-elsbetiae_contig8881:5124..7372- (Laminarionema elsbetiae ELsaHSoW15)
GGGGATGTCGCAGCAATCTCGCTCGGTGGGGGACTCGGCTTCCATTACGG
TCATGCCGGCGGTGAGTCATAGCCTGTCTTCACCCCTCCCCCTCCCCTTG
CCGCCTTTCGCTCCTTTCGCCTTCCCTTCCGGCTTTTGATGGTGACGATA
TAAGCTTCGAAACCTTCGCCAGGTCGTCCTTGCCGGACAACAAGGAGATG
TTGATTAAGCACCCACACATCAATACAGAGAAAAACTATTATTTGTAAGA
ACACTATCCTTGAGAGCATTCTTGTGCGAGCACCTACCTGTGTTGTGTCG
ATATCGTCCACGCTTCACTGAAGGAATGCCAATGCTGCCGAAAACAATTA
CCAGTTTTTACCTTTCGTCTCTCGCCACGTTCTGTCGTTCTACCTAAACA
TTACACGTACTATGTTTTACATATCTCTGTCTGTGTCTCTCTGTTTAACG
GTCGCCGACGAGACGTCAACCAATGTCCAGCGAAAGCAAAGGCTATATAC
TACAGTGTACCTGGTACCATTTCCGTATGACTCCTACTCAACCATCGGAC
AACACGTTTTATCTTTTTGGTTTCATCTCCGAAGGGTGCAAAACCCATGC
AACTGCAGGACACCGATCGATGTTCCCAGACATGGATCAAGGGAACTCGC
TACTCACCCGTATTATATGCCGCTTAACACATAGATACTGTTTAGTTGTT
GGTGATAATCGGAGCCCCCCACCCGGGCTATACGGGCTCCTCGTAGCTGC
ATTTAAGCTGGGTGCGACCCAGCAAGCAGCACACACACCAAAGAAGCAAC
AGCTTTCCGCACGTGGCACTGGCACACACAAGATAGATGCTCATCCGAGG
CTCTCATCTTGTTCGTTCTTTTTTTCTCTCTCCGAATAATCTACAGGACA
AACGTACGGAGTAATATATCTACGGACCTTCCTTCCATCTGCCCGTGAAA
ACCCCGCTAGTATGTGGGCGTGTCGTAACCTACCAAGCAGCACAACGACA
CGAATACACCTCAAAGGAAATGACTACTGAATTGCGAGGGGCATAGTCTA
GGCACGAGCAAATTATGAGCTGACACAAGAAAAAAGTGAAAAAAAAACAT
GAAAACAGAGAGAGAGAAAAAAAACGGCCGAATTGCAAGGTGATAAATAT
ATCCATCCATCCATCCATCCACACGTACCTATAGTCTACATAAAAGAACT
CACGCAGAGTTGAAGAAAAACGACGGTGGGCGAAAAGGAGCGGAACTAAA
AAAGGGGGGGGGGTGGGGGGGGATGCTATTCGCATCCCTTTGTCACCGGC
GGGAATTCGAAACCTACAGTCAGTCTACGTAGTGGGCCGACCTTTCAACC
GAACACCCATTTTGGACGCGGGAATGTGTGTAACTCATTTGGCCCCATCT
AAATGTGGTTCAGTTTTTGTTTCCTCGGTGGTTTTTGGTCAGTTTCTATC
AACAGACGCTGCGAGACGGGACTCGAGCAGGGTTCATTGCGCGGATTAGC
CAATTTCATATCTATGTGTAGCTACTATGACCCCTGGCTGTTTGCTGCTG
GCTTTCAAAGTCCTCGCCAAAAACGTCACCTGCGCACAATGATAGACCAC
GAGAGCACCTTACTTAGTCATGACTTGGGCCTGACAGTGCCCTTGCCGCC
CCTTCCCCTCAGCTCTCTGACATCTAACATCAACGAGGAGCACACCAGAG
CATACGTACCACAAGACGTCGAAACGCGCCAAAGGCGGAGGGATCGTTGC
CGGTTCAGAAGAAATTGCGTAGACGGTACTAGCTAGACGGTACTCTTGAA
AACCTCAAAACACACAAGAGAGCACACGAGGTTCGTACTTTTACTGCATA
TACGGCAGCTTATGCATAAAGCATGCTACTGCCGCCATGGTGTCTGGGTG
GTCGCTTATTCTGGATATGTTGGTACGTGTTTCCACACGCCATCCCCTCC
GCACTTTTTCGGATCCGTTGAAACCGCCGTGTCGTATCGACCAAAAGCCG
GAGACAGAGCCGAGCGTCTTCTCGGCACCCTCGCCATGGCATCCTGCGAA
CACCGCTCCGGCGGCGGCGTCGGTGGCAGGAGTGGCCACCAGAGTGGCTG
AAAGCCGCAACGCTCACAGCACTAACAACAGCAACAGCAAGCTCGGAAAG
GGGAAAATCGTCCACGGCAGAAACAACAACGGCAGCAGCAGCAGCACCAC
CACCACCACCAGCCACCACCAGCAAGCGGCCGGAACAGCCACAGCGTCG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig8881:5124..7372-

>mRNA_L-elsbetiae_contig8881.17905.1 ID=mRNA_L-elsbetiae_contig8881.17905.1|Name=mRNA_L-elsbetiae_contig8881.17905.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=618bp|location=Sequence derived from alignment at L-elsbetiae_contig8881:5124..7372- (Laminarionema elsbetiae ELsaHSoW15)
ATGTCGCAGCAATCTCGCTCGGTGGGGGACTCGGCTTCCATTACGGTCAT
GCCGGCGATGTCGCAGCAATCTCGCTCGGTGGGGGACTCGGCTTCCATTA
CGGTCATGCCGGCGCCGGAGACAGAGCCGAGCGTCTTCTCGGCACCCTCG
CCATGGCATCCTGCGAACACCGCTCCGGCGGCGGCGTCGGTGGCAGGAGT
GGCCACCAGAGTGGCTGAAAGCCGCAACGCTCACAGCACTAACAACAGCA
ACAGCAAGCTCGGAAAGGGGAAAATCGTCCACGGCAGAAACAACAACGGC
AGCAGCAGCAGCACCACCACCACCACCAGCCACCACCAGCAAGCGGCCGG
AACAGCCACAGCGTCGCCGGAGACAGAGCCGAGCGTCTTCTCGGCACCCT
CGCCATGGCATCCTGCGAACACCGCTCCGGCGGCGGCGTCGGTGGCAGGA
GTGGCCACCAGAGTGGCTGAAAGCCGCAACGCTCACAGCACTAACAACAG
CAACAGCAAGCTCGGAAAGGGGAAAATCGTCCACGGCAGAAACAACAACG
GCAGCAGCAGCAGCACCACCACCACCACCAGCCACCACCAGCAAGCGGCC
GGAACAGCCACAGCGTCG
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