mRNA_L-elsbetiae_contig8854.17875.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	mRNA_L-elsbetiae_contig8854.17875.1
Unique Name	mRNA_L-elsbetiae_contig8854.17875.1
Type	mRNA
Organism	Laminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)

Homology

The following BLAST results are available for this feature:

BLAST of mRNA_L-elsbetiae_contig8854.17875.1 vs. uniprot

BLAST of mRNA_L-elsbetiae_contig8854.17875.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0


Match Name	E-value	Identity	Description

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
L-elsbetiae_contig8854	contig	L-elsbetiae_contig8854:4823..7536 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Diamond blastx: OGS1.0 vs UniRef90	2022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW15	2021-02-24

Properties


Property Name	Value
Hectar predicted targeting category	other localisation
Ec32 ortholog description	Hypothetical protein
Ec32 ortholog	Ec-18_002780.1
Exons	5
Model size	505
Cds size	501
Stop	0
Start	0

Relationships

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
mRNA_L-elsbetiae_contig8854.17875.1	prot_L-elsbetiae_contig8854.17875.1	Laminarionema elsbetiae ELsaHSoW15	polypeptide	L-elsbetiae_contig8854 4823..7534 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1622816962.9318779-CDS-L-elsbetiae_contig8854:4822..4852	1622816962.9318779-CDS-L-elsbetiae_contig8854:4822..4852	Laminarionema elsbetiae ELsaHSoW15	CDS	L-elsbetiae_contig8854 4823..4852 +
1691683945.0565567-CDS-L-elsbetiae_contig8854:4822..4852	1691683945.0565567-CDS-L-elsbetiae_contig8854:4822..4852	Laminarionema elsbetiae ELsaHSoW15	CDS	L-elsbetiae_contig8854 4823..4852 +
1622816962.942627-CDS-L-elsbetiae_contig8854:5027..5174	1622816962.942627-CDS-L-elsbetiae_contig8854:5027..5174	Laminarionema elsbetiae ELsaHSoW15	CDS	L-elsbetiae_contig8854 5028..5174 +
1691683945.0713966-CDS-L-elsbetiae_contig8854:5027..5174	1691683945.0713966-CDS-L-elsbetiae_contig8854:5027..5174	Laminarionema elsbetiae ELsaHSoW15	CDS	L-elsbetiae_contig8854 5028..5174 +
1622816962.9532182-CDS-L-elsbetiae_contig8854:5381..5452	1622816962.9532182-CDS-L-elsbetiae_contig8854:5381..5452	Laminarionema elsbetiae ELsaHSoW15	CDS	L-elsbetiae_contig8854 5382..5452 +
1691683945.089498-CDS-L-elsbetiae_contig8854:5381..5452	1691683945.089498-CDS-L-elsbetiae_contig8854:5381..5452	Laminarionema elsbetiae ELsaHSoW15	CDS	L-elsbetiae_contig8854 5382..5452 +
1622816962.9641492-CDS-L-elsbetiae_contig8854:6812..7009	1622816962.9641492-CDS-L-elsbetiae_contig8854:6812..7009	Laminarionema elsbetiae ELsaHSoW15	CDS	L-elsbetiae_contig8854 6813..7009 +
1691683945.1029356-CDS-L-elsbetiae_contig8854:6812..7009	1691683945.1029356-CDS-L-elsbetiae_contig8854:6812..7009	Laminarionema elsbetiae ELsaHSoW15	CDS	L-elsbetiae_contig8854 6813..7009 +
1622816962.9746087-CDS-L-elsbetiae_contig8854:7478..7534	1622816962.9746087-CDS-L-elsbetiae_contig8854:7478..7534	Laminarionema elsbetiae ELsaHSoW15	CDS	L-elsbetiae_contig8854 7479..7534 +
1691683945.1139028-CDS-L-elsbetiae_contig8854:7478..7534	1691683945.1139028-CDS-L-elsbetiae_contig8854:7478..7534	Laminarionema elsbetiae ELsaHSoW15	CDS	L-elsbetiae_contig8854 7479..7534 +

Sequences

The following sequences are available for this feature:

protein sequence
mRNA from alignment at L-elsbetiae_contig8854:4823..7536+
coding sequence from alignment at L-elsbetiae_contig8854:4823..7536+

protein sequence of mRNA_L-elsbetiae_contig8854.17875.1

>prot_L-elsbetiae_contig8854.17875.1 ID=prot_L-elsbetiae_contig8854.17875.1|Name=mRNA_L-elsbetiae_contig8854.17875.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=167bp
GTEPAVEASQWHCTDGARSIMSPAAKQLGDPNLTASFSKGISALGWTSSG
ALGRDLLQKLFIEGYDYTDDGVSITTIRFGPWGIGLEGSSEALYTTQTSC
EDDGALATGVEVTFQGEEDRAEVVVAMRLRCAKITSTCVAPPFSTSDSGA
GVGEALSTGTSSPIRDI

mRNA from alignment at L-elsbetiae_contig8854:4823..7536+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_L-elsbetiae_contig8854.17875.1 ID=mRNA_L-elsbetiae_contig8854.17875.1|Name=mRNA_L-elsbetiae_contig8854.17875.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=2714bp|location=Sequence derived from alignment at L-elsbetiae_contig8854:4823..7536+ (Laminarionema elsbetiae ELsaHSoW15)
GGAACGGAGCCCGCTGTCGAAGCATCGCAGGTACCGAGACAGGGCTAACC
TAATCCACTTTCGTAATGGCTTACCGTAAACCCTGATGTGCATGCTATAA
AATGTTAACCCGCCTTACATAAGCACCGCAGTGTGTAGAGGGATAGCGTA
AATATGCAAGTAACCGACCATCTTTCCCCCCCCTTGACGATTTTGAAAAC
CAAAGTGGCACTGCACAGACGGAGCGAGGTCGATCATGAGCCCAGCAGCG
AAACAGCTTGGCGACCCGAACTTGACTGCATCGTTCAGCAAGGGAATCAG
CGCCTTGGGATGGACGTCGAGCGGGGCTTTGGGCCGTGACCTCTTGCAGA
AGGTCTTGTCTCACCCAGCCTGTTTCCGAATCATCCAACCAATAGCAAGC
AGATTTACCGGGTAGATCCGCTCAATTTACCTACTACTCGCCTTTTCTTC
GTAGCTCTGTAAGACGGAAAGCGCACAGCATGTGAGTGAGCATATATGAG
ATCCATCCACGGCGCTAAACATTTGGGTTATGTACGTGCCGCACCCGCCT
CGGCAGCAGTTGTTTATCGAAGGGTACGACTACACCGATGACGGCGTCAG
CATCACCACCATCCGGTTCGGTCCTTGGGGGTGAGTTTGCGTGATGCCTT
GTCTTTTTGAGCCAGAACGAAAATCAAGGTGTAAGGGGGGGGTGTGGCCC
TATAGCAGCCTTAGCCTTTGTTCACTGTCGAGTATTTATTGCGTGCGTTT
CCCTGTCCGCGTTCACCGTGCACAACATTCACCGCACACAACGATATCGT
CCAAGTGCACACTTGCGTTCAGCCATGCTCGACTCCTTGTCCATGTGCTC
ATGCACTGTAGTATCTAAAAACATAGGTTCATACATCCATATAGTTTGCG
TGCACCTCTCTCGTCTCTCTTTCTCTCTCTCTACTCTACTCTAGCCGCCG
CGATCGAGGTGTGTTGTGCGATGTGCGGGTGTGCGTGCACAGCCTTTCTC
CCCCGACGGCCCGATATATACAACGAGGCATTGATGAATGCTGTGAATTC
TGCACCAGCTGTTCTGCACCTTGTGCGGGACTTCTCAACCTTTTTGGAGG
TTAGCGTTGTCAAGGTTCACCGCTGGGTTGAGTTGCGGGACCTTGTGGTA
TTTCATACCTTGCCCAAGGTACTGAAATCTTTACGCGCTCAAAGGTTGAC
CCGACAAGGTTATTTTTTCGAGGCTTGCGGGACCTTGTGGCATTTCATGC
ATTGCTCAAGGTGTAGACAACCTTTAGTACGCTCAAAGGTTGTTAAGGTC
ATTTTTGTCGAGGCTTGCGAGACCCTGCAGCTTTTCATACCTTGCCCAAG
GTGGCAGCAACCTTCACCATGCGCAAAGGTTGACAGGGTTGTTTTATCAA
GAGTTGTGGACACCTTGTGGGGTTTGCTAGATTATGCAAGGTGTTCTCAA
GGTTAATATCGTCAACACCTCGGGCAGGGGGCGGGAGGGGGTGGCCACCT
GTGTGTGGGAGAATCCGGTCTCGCGCATTACTCAAGCAAGAGACACCCGC
ATAGCTCAGGCTGGGAAGGCGCCTTGATCCGTTGTTGGCAGGTCGAAACG
CCCCCTCCCTAAAAAGTATCGTGGATACCCCCCTCAAATGTCACATTCCT
GATACCTAGCTAAAACAGCTCGAGAAACACAGACGTCGTAAGTATGCTAA
CAACATATATGCCACCGTAGACTAGCCCAAGGCGAGAGGAAGGCGCGAGC
GGTATACTCCTGTCAAGCAAAATGACAACGACTATGTGTAGACCTTTCCA
CTTCCACGTCCGCGCGATGAAGCCATATTGACCGACCGCCCAGCCCTCCT
TCTTTCATGCACCCCTTGTACGTGTGCACGGGCGCTGTTGTGTGTGTGTG
TGTGTGTGTGTGTGTGTGTGTGTGTGTGTATGTGTGCCACGTCCGTGTTT
TCTGTGTGTCTTCTCGCCACCCGGCATCACGGGGGGAAAGGATTGGCCTC
GAGGGTAGTTCTGAGGCTCTCTACACGACTCAAACAAGCTGCGAGGACGA
CGGAGCGCTAGCCACGGGTGTCGAGGTGACATTTCAGGGCGAAGAAGACA
GAGCAGAGGTCGTCGTGGCGATGAGGCTGCGATGCGCCAAGATCACCTCG
ACCTGCGTCGCCCCCCCCTTCAGCACGTCCGACTCGGGTATGTAGACTAT
GTACGCACTGGTATATTTTATCCCATGATACTGTTGTACGTAGATATACA
TATATATGCAGTACGCGTCGAAAGTTGAATCACGTGTGACCCGACAAGTT
AGCATTCCCTGGCTAGCCCGTTGTTGGTAGTCGTGCCCCTCTAAGGCGAT
GGCGTTTCCTCAAACGTTAGCAGCTCGAAAAGTTTGATCTCGGTTTGAAG
TTTGTGGTTGATCGCATCCACTTACGCGTGTGCTATTGATAGTGCTGATG
CTTCCTGGGTTGTGATATATATATGTGGTGCGCTCAAGTGTATAGTCTAG
TGGCCGCATGCATCTTGCTCGGCTCGAACAACTGCAGTACAGTAATTTAT
CCACCGGTATTAGCAGCACTTCTACGAGTAGATACAGATTGGTGAAATAC
ACCTCCTCCATGGATTTCGCCCGCATGTTGCCGCTTTCTGTCCAACACCT
ACGTAGGTGCCGGAGTTGGCGAAGCTTTGTCTACCGGCACGTCATCTCCT
ATACGAGACATCGG

Coding sequence (CDS) from alignment at L-elsbetiae_contig8854:4823..7536+

>mRNA_L-elsbetiae_contig8854.17875.1 ID=mRNA_L-elsbetiae_contig8854.17875.1|Name=mRNA_L-elsbetiae_contig8854.17875.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1002bp|location=Sequence derived from alignment at L-elsbetiae_contig8854:4823..7536+ (Laminarionema elsbetiae ELsaHSoW15)
GGAACGGAGCCCGCTGTCGAAGCATCGCAGGGAACGGAGCCCGCTGTCGA
AGCATCGCAGTGGCACTGCACAGACGGAGCGAGGTCGATCATGAGCCCAG
CAGCGAAACAGCTTGGCGACCCGAACTTGACTGCATCGTTCAGCAAGGGA
ATCAGCGCCTTGGGATGGACGTCGAGCGGGGCTTTGGGCCGTGACCTCTT
GCAGAAGTGGCACTGCACAGACGGAGCGAGGTCGATCATGAGCCCAGCAG
CGAAACAGCTTGGCGACCCGAACTTGACTGCATCGTTCAGCAAGGGAATC
AGCGCCTTGGGATGGACGTCGAGCGGGGCTTTGGGCCGTGACCTCTTGCA
GAAGTTGTTTATCGAAGGGTACGACTACACCGATGACGGCGTCAGCATCA
CCACCATCCGGTTCGGTCCTTGGGGTTGTTTATCGAAGGGTACGACTACA
CCGATGACGGCGTCAGCATCACCACCATCCGGTTCGGTCCTTGGGGGATT
GGCCTCGAGGGTAGTTCTGAGGCTCTCTACACGACTCAAACAAGCTGCGA
GGACGACGGAGCGCTAGCCACGGGTGTCGAGGTGACATTTCAGGGCGAAG
AAGACAGAGCAGAGGTCGTCGTGGCGATGAGGCTGCGATGCGCCAAGATC
ACCTCGACCTGCGTCGCCCCCCCCTTCAGCACGTCCGACTCGGGATTGGC
CTCGAGGGTAGTTCTGAGGCTCTCTACACGACTCAAACAAGCTGCGAGGA
CGACGGAGCGCTAGCCACGGGTGTCGAGGTGACATTTCAGGGCGAAGAAG
ACAGAGCAGAGGTCGTCGTGGCGATGAGGCTGCGATGCGCCAAGATCACC
TCGACCTGCGTCGCCCCCCCCTTCAGCACGTCCGACTCGGGTGCCGGAGT
TGGCGAAGCTTTGTCTACCGGCACGTCATCTCCTATACGAGACATCGTGC
CGGAGTTGGCGAAGCTTTGTCTACCGGCACGTCATCTCCTATACGAGACA
TC