mRNA_L-elsbetiae_contig8694.17723.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig8694.17723.1
Unique NamemRNA_L-elsbetiae_contig8694.17723.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
[Close]
BLAST of mRNA_L-elsbetiae_contig8694.17723.1 vs. uniprot
Match: A0A6H5KMP8_9PHAE (C2H2-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KMP8_9PHAE)

HSP 1 Score: 127 bits (318), Expect = 5.600e-32
Identity = 93/146 (63.70%), Postives = 101/146 (69.18%), Query Frame = 1 
Query:   97 VDDQIAALERELQSSGDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQLKKLVSPLDAEKIEPLPAHLLPRPGCGTQKDDKKXXXXXTGPKAKDVDGTAAAAPAPSRGLDSAVKELLANYEARSSERVPFYCRVCQFQGE 534
            VDDQIAALEREL+ +                    XXXXXXXXXXXXXXX   +  KLVSPL+AEKIEPLPAHLLPRPGCG  KD+KK        K     GT A  P PS+GLDSAVKELLANYEARSSERVPFYCRVC+FQG+
Sbjct:   79 VDDQIAALERELKGA-------DVSSSDAESSISSXXXXXXXXXXXXXXXERGRATKLVSPLEAEKIEPLPAHLLPRPGCGVHKDNKKKK------KPSAAVGTTAL-PGPSQGLDSAVKELLANYEARSSERVPFYCRVCKFQGD 210
[Close]
BLAST of mRNA_L-elsbetiae_contig8694.17723.1 vs. uniprot
Match: D7FWN0_ECTSI (C2H2 zinc finger protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FWN0_ECTSI)

HSP 1 Score: 125 bits (314), Expect = 2.200e-31
Identity = 97/147 (65.99%), Postives = 105/147 (71.43%), Query Frame = 1 
Query:   94 AVDDQIAALERELQSSGDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQLKKLVSPLDAEKIEPLPAHLLPRPGCGTQKDDKKXXXXXTGPKAKDVDGTAAAAPAPSRGLDSAVKELLANYEARSSERVPFYCRVCQFQGE 534
            AVDDQIAALEREL+ + D      XXXXXXXXXXXXXX                ++ KLVSPL+ EKIEPLPAHLLPRPGCG  KD K XXXX   P A    GT A  P PS+GLDSAVKELLANYEARSSERVPFYCRVC+FQG+
Sbjct:   80 AVDDQIAALERELKGANDSSSDAEXXXXXXXXXXXXXXRGAGRERG--------RVAKLVSPLEVEKIEPLPAHLLPRPGCGVHKDKKXXXXX---PSA--AVGTTAL-PGPSQGLDSAVKELLANYEARSSERVPFYCRVCKFQGD 212
[Close]
BLAST of mRNA_L-elsbetiae_contig8694.17723.1 vs. uniprot
Match: A0A835Z659_9STRA (C2H2-type domain-containing protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z659_9STRA)

HSP 1 Score: 59.7 bits (143), Expect = 1.240e-8
Identity = 24/32 (75.00%), Postives = 30/32 (93.75%), Query Frame = 1 
Query:  436 GLDSAVKELLANYEARSSERVPFYCRVCQFQG 531
            GL+ AV ELLANYEA+S+ER+P+YCRVC+FQG
Sbjct:    2 GLEGAVNELLANYEAKSAERIPYYCRVCKFQG 33
[Close]
BLAST of mRNA_L-elsbetiae_contig8694.17723.1 vs. uniprot
Match: B7FRV3_PHATC (Predicted protein n=2 Tax=Phaeodactylum tricornutum TaxID=2850 RepID=B7FRV3_PHATC)

HSP 1 Score: 54.7 bits (130), Expect = 1.120e-5
Identity = 35/87 (40.23%), Postives = 48/87 (55.17%), Query Frame = 1 
Query:  271 VSPLDAEKIEPLPAHLLPRPGCGTQKDDKKXXXXXTGPKAKDVD-GTAAAAPAPSRGLDSAVKELLANYEARSSERVPFYCRVCQFQ 528
            +S +  ++IEPLP++LLP      +K   K        +  D D      +   S GL++AVKE+L  Y  RSSER+PFYCRVC  Q
Sbjct:   91 LSSVQKDRIEPLPSNLLP----SNRKRSLKGIDRVNASERDDADQSNKKKSKLVSSGLEAAVKEVLDGYVPRSSERLPFYCRVCAQQ 173
[Close]
BLAST of mRNA_L-elsbetiae_contig8694.17723.1 vs. uniprot
Match: I2CRP9_NANGC (C2h2 zinc finger protein (Fragment) n=1 Tax=Nannochloropsis gaditana (strain CCMP526) TaxID=1093141 RepID=I2CRP9_NANGC)

HSP 1 Score: 51.2 bits (121), Expect = 1.850e-5
Identity = 21/33 (63.64%), Postives = 26/33 (78.79%), Query Frame = 1 
Query:  436 GLDSAVKELLANYEARSSERVPFYCRVCQFQGE 534
            GL   V ELL+NY+  SSER PFYCR+C+FQG+
Sbjct:    2 GLAQTVAELLSNYQPASSERRPFYCRICRFQGQ 34
[Close]
BLAST of mRNA_L-elsbetiae_contig8694.17723.1 vs. uniprot
Match: W7TIZ9_9STRA (C2h2 zinc finger n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TIZ9_9STRA)

HSP 1 Score: 51.2 bits (121), Expect = 5.020e-5
Identity = 21/33 (63.64%), Postives = 26/33 (78.79%), Query Frame = 1 
Query:  436 GLDSAVKELLANYEARSSERVPFYCRVCQFQGE 534
            GL   V ELL+NY+  SSER PFYCR+C+FQG+
Sbjct:   33 GLAQTVAELLSNYQPASSERRPFYCRICRFQGQ 65
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig8694.17723.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 6
Match NameE-valueIdentityDescription
A0A6H5KMP8_9PHAE5.600e-3263.70C2H2-type domain-containing protein n=1 Tax=Ectoca... [more]
D7FWN0_ECTSI2.200e-3165.99C2H2 zinc finger protein n=1 Tax=Ectocarpus silicu... [more]
A0A835Z659_9STRA1.240e-875.00C2H2-type domain-containing protein (Fragment) n=1... [more]
B7FRV3_PHATC1.120e-540.23Predicted protein n=2 Tax=Phaeodactylum tricornutu... [more]
I2CRP9_NANGC1.850e-563.64C2h2 zinc finger protein (Fragment) n=1 Tax=Nannoc... [more]
W7TIZ9_9STRA5.020e-563.64C2h2 zinc finger n=1 Tax=Nannochloropsis gaditana ... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig8694contigL-elsbetiae_contig8694:7280..7825 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionC2H2 zinc finger protein
Ec32 orthologEc-06_001270.1
Exons1
Model size546
Cds size546
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816949.7440746-CDS-L-elsbetiae_contig8694:7279..78251622816949.7440746-CDS-L-elsbetiae_contig8694:7279..7825Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig8694 7280..7825 +
1691683934.89586-CDS-L-elsbetiae_contig8694:7279..78251691683934.89586-CDS-L-elsbetiae_contig8694:7279..7825Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig8694 7280..7825 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig8694.17723.1prot_L-elsbetiae_contig8694.17723.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig8694 7280..7825 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig8694.17723.1

>prot_L-elsbetiae_contig8694.17723.1 ID=prot_L-elsbetiae_contig8694.17723.1|Name=mRNA_L-elsbetiae_contig8694.17723.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=182bp
RADGGRGDGGSEAEAEGAQGTGSSSVAAGGEAVDDQIAALERELQSSGDS
SSDEESSGSEDDGSDERPEDDDNGAATTTLERRRRQLKKLVSPLDAEKIE
PLPAHLLPRPGCGTQKDDKKKKKKKTGPKAKDVDGTAAAAPAPSRGLDSA
VKELLANYEARSSERVPFYCRVCQFQGERCV*
back to top

mRNA from alignment at L-elsbetiae_contig8694:7280..7825+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig8694.17723.1 ID=mRNA_L-elsbetiae_contig8694.17723.1|Name=mRNA_L-elsbetiae_contig8694.17723.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=546bp|location=Sequence derived from alignment at L-elsbetiae_contig8694:7280..7825+ (Laminarionema elsbetiae ELsaHSoW15)
CGCGCAGATGGCGGCAGAGGGGACGGCGGCAGTGAGGCGGAGGCGGAGGG
GGCGCAGGGCACGGGTAGCAGCAGTGTGGCTGCCGGAGGTGAGGCTGTTG
ACGATCAAATCGCGGCTCTAGAGCGCGAGCTTCAGAGCAGTGGAGACAGC
AGCAGCGACGAGGAAAGTTCCGGCAGCGAGGATGATGGCAGCGATGAGCG
GCCGGAGGACGACGACAACGGCGCCGCCACCACCACGCTCGAGCGCCGGC
GACGACAGCTGAAGAAACTCGTGTCTCCTCTCGATGCCGAAAAGATCGAG
CCGTTGCCCGCGCACCTCCTGCCGCGGCCTGGGTGCGGCACGCAGAAAGA
CGACAAGAAGAAGAAGAAGAAGAAGACGGGGCCGAAGGCTAAAGACGTTG
ACGGGACAGCCGCAGCGGCGCCGGCGCCGTCTCGAGGGCTGGACAGCGCC
GTGAAGGAGCTCCTGGCCAACTACGAGGCTCGGTCCTCTGAGCGGGTCCC
GTTCTACTGCAGGGTGTGCCAGTTCCAGGGAGAGAGGTGTGTGTGA
back to top

Coding sequence (CDS) from alignment at L-elsbetiae_contig8694:7280..7825+

>mRNA_L-elsbetiae_contig8694.17723.1 ID=mRNA_L-elsbetiae_contig8694.17723.1|Name=mRNA_L-elsbetiae_contig8694.17723.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1092bp|location=Sequence derived from alignment at L-elsbetiae_contig8694:7280..7825+ (Laminarionema elsbetiae ELsaHSoW15)
CGCGCAGATGGCGGCAGAGGGGACGGCGGCAGTGAGGCGGAGGCGGAGGG
GGCGCAGGGCACGGGTAGCAGCAGTGTGGCTGCCGGAGGTGAGGCTGTTG
ACGATCAAATCGCGGCTCTAGAGCGCGAGCTTCAGAGCAGTGGAGACAGC
AGCAGCGACGAGGAAAGTTCCGGCAGCGAGGATGATGGCAGCGATGAGCG
GCCGGAGGACGACGACAACGGCGCCGCCACCACCACGCTCGAGCGCCGGC
GACGACAGCTGAAGAAACTCGTGTCTCCTCTCGATGCCGAAAAGATCGAG
CCGTTGCCCGCGCACCTCCTGCCGCGGCCTGGGTGCGGCACGCAGAAAGA
CGACAAGAAGAAGAAGAAGAAGAAGACGGGGCCGAAGGCTAAAGACGTTG
ACGGGACAGCCGCAGCGGCGCCGGCGCCGTCTCGAGGGCTGGACAGCGCC
GTGAAGGAGCTCCTGGCCAACTACGAGGCTCGGTCCTCTGAGCGGGTCCC
GTTCTACTGCAGGGTGTGCCAGTTCCAGGGAGAGAGGTGTGTGTGACGCG
CAGATGGCGGCAGAGGGGACGGCGGCAGTGAGGCGGAGGCGGAGGGGGCG
CAGGGCACGGGTAGCAGCAGTGTGGCTGCCGGAGGTGAGGCTGTTGACGA
TCAAATCGCGGCTCTAGAGCGCGAGCTTCAGAGCAGTGGAGACAGCAGCA
GCGACGAGGAAAGTTCCGGCAGCGAGGATGATGGCAGCGATGAGCGGCCG
GAGGACGACGACAACGGCGCCGCCACCACCACGCTCGAGCGCCGGCGACG
ACAGCTGAAGAAACTCGTGTCTCCTCTCGATGCCGAAAAGATCGAGCCGT
TGCCCGCGCACCTCCTGCCGCGGCCTGGGTGCGGCACGCAGAAAGACGAC
AAGAAGAAGAAGAAGAAGAAGACGGGGCCGAAGGCTAAAGACGTTGACGG
GACAGCCGCAGCGGCGCCGGCGCCGTCTCGAGGGCTGGACAGCGCCGTGA
AGGAGCTCCTGGCCAACTACGAGGCTCGGTCCTCTGAGCGGGTCCCGTTC
TACTGCAGGGTGTGCCAGTTCCAGGGAGAGAGGTGTGTGTGA
back to top