mRNA_L-elsbetiae_contig8650.17690.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig8650.17690.1
Unique NamemRNA_L-elsbetiae_contig8650.17690.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig8650.17690.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig8650contigL-elsbetiae_contig8650:3439..6200 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-12_006370.1
Exons2
Model size770
Cds size768
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816946.8465815-CDS-L-elsbetiae_contig8650:3439..40091622816946.8465815-CDS-L-elsbetiae_contig8650:3439..4009Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig8650 3440..4009 -
1691683932.7966735-CDS-L-elsbetiae_contig8650:3439..40091691683932.7966735-CDS-L-elsbetiae_contig8650:3439..4009Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig8650 3440..4009 -
1622816946.8578799-CDS-L-elsbetiae_contig8650:6002..62001622816946.8578799-CDS-L-elsbetiae_contig8650:6002..6200Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig8650 6003..6200 -
1691683932.8087764-CDS-L-elsbetiae_contig8650:6002..62001691683932.8087764-CDS-L-elsbetiae_contig8650:6002..6200Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig8650 6003..6200 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig8650.17690.1prot_L-elsbetiae_contig8650.17690.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig8650 3440..6200 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig8650.17690.1

>prot_L-elsbetiae_contig8650.17690.1 ID=prot_L-elsbetiae_contig8650.17690.1|Name=mRNA_L-elsbetiae_contig8650.17690.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=256bp
DARGSVTRILSKVERLDWVDQEGAPMAGVGRADITTGLNIWSVSREGQGR
IKRLRDGGVPEGGQEKVKDNSNRTDLEVLPLPSRHHHQLEQRFSINDEVQ
HHQHQRQQLVASTTMDELAALMSQALATVAMASAVSTVAEPTATTTDVKE
LPLPLPASAKAPTTAPSKSVNTTTTPPQPREQNSNSTFHEANSDNIDLRS
FANEIDGRCAAAVKTLHAASRAVISPGEELNHSYEAYSSAFCSLQEAERS
VRCAEE
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mRNA from alignment at L-elsbetiae_contig8650:3439..6200-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig8650.17690.1 ID=mRNA_L-elsbetiae_contig8650.17690.1|Name=mRNA_L-elsbetiae_contig8650.17690.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=2762bp|location=Sequence derived from alignment at L-elsbetiae_contig8650:3439..6200- (Laminarionema elsbetiae ELsaHSoW15)
GATGCCAGGGGAAGCGTAACGCGCATTTTGAGCAAAGTCGAAAGACTCGA
TTGGGTCGACCAGGAGGGGGCACCAATGGCGGGAGTCGGCAGAGCTGATA
TTACCACTGGTCTTAATATTTGGTCGGTGTCAAGGGAAGGCCAAGGCCGC
ATAAAAAGGCTTCGGGATGGCGGAGTGCCGGAGGGAGGACAAGAAAAGGT
CAGATTTGGTTTGGCTTGTCTGGTCAGTTGGCAATATACTGATAGTCTGT
TCACGACGCGAAGGGGGCCATGAACATAAATGCACCAAAATCGATATATG
TATGCTTCTTTTCTATCATGTACGGCGAATTCTTTGTACATGCTGCAGTT
TCCACTTTTAGATAGACATATGCCAAGGGTAAGTTAGCCTGTGAGCACGG
GAATCGACCACGTCAAGTGTTTTGGATCAGTACGGACATACTATGGAGGT
AATGGATAAATAGATCGGAACGGTTTCTAATGTGAAGACAACAACACAAC
TACGAGAGACGAAAACGAACCAGTACACTTCCAGTGTTATTAAGGATGGC
CACGATCACGTGGCTAAGGGGAAAAGGCCAAACCCCAGAAAAGGCGAAGA
GGCATGTGTTTTGTGGTCCGCACCCGGCCAAAGCTAACGTGGTTTCCAGG
TGCTCGGTCAAACTATTAAAAAACGGCGGTTACTTCGCGGCGCAACTGTG
TTTTTGGCCTCTTTTTGCTTTTGCACTAGGCGCCATCGCAATTTAAAATG
AAGCACGTTCTCCTTGGCCTCTAGGTTAACATATTTATCGAAAGCCAAGG
ACAACAGCTACCATCGCGTGGCCTTCGTTTCTTTAGCGGTGCTGTAGAGC
CTTCGCTGCCCTCCGTTCCTTGTATCAAACCTTATACGACCGTTGTAGAG
CTGTCGACATGGCAAACGTCACTGCCATCTCAAAACGGGGCTGCCACCGC
TGCTGAGAACGCCAGAGATTGCTCTAAAGTACTATTCAAGTACACCTGTG
TCTCGTCGTAGCCTCTGGTTGGGCGTACCTGTCATGGCATCCGCCGCCAT
AGGCTGAGGTCGAAGTTAGGCCGCATTGTTACAGCTGTTCGAAAAGGGCC
AAAAATGCTCTCTTGTCACACCGCCACTCGAAGCACAAGGATCTGTTTGA
AGCCTGCCCCCCGGCTATGGCACTCTTTTGGGATGCCCTTCGACATATCT
CTTAGCCTACTGGCCAAGAAGATGGTGCCCCATTTTCTGAAAATCGTCGG
GCATTTCGACAACTTGCTGTGTTTATAATCAAGTAAAACAAAATAATCTA
GGTTGTACAGTAAAGCAGGGGACGCTACCGGGCCACTGATCGTGGCCTAA
CTTAAAACGAAAATGCGTATCGGTCCAAAACAACTTTTGGAGTGTTGTCG
GCGACGACATTAAGTCTAACAGCAATTTAAACGTCTCAATGTGCCGAGAA
ACATCATTCGCGTTTTGGCACTGCACTTTCCGTCTAATAATGGTGCCGCC
GTACAAATCGTAAAGTTGTTGTTGTCTTCAGAATAAAAAGCGTATCTCTT
TACGGGTCCGTAGTGATAACTGACCTGATGCGAACGCCTTCCGTGGCCAC
GATAACTGACTACTCGGAAAAGGTTGACGACCCGCCCCCCATCCAACCTC
TGCCAAATATTCGGTCACGGCCCTGCACTTAGTAATGTGGGCACCTACCG
AACGAAAAAGCTAAGTTGAGTTAGTAACAAGGTAGATGGGTGGAAACAAA
CTGGACTGTACTATCGCAAGAGTGGCATATGATAGCACATACACCCCGGT
GATGAAGATTTTGGGGTTTAAACAGCTTAGGGCTGAGTTGCTTCCTGGAA
GGGCTTGCTTCCTGGAAGGGTGTGCTTTCTTTGTCACACCCCTAAACTTG
TAATAATTAGCTTTTTCCTGTATCAAAAAACACCGCCAGGTGTGCTTTTC
TGGAGATGAAGTGTTTGGGGGTGTGCTATCTTCTGAAAGGGTGCTTTCTT
GTGTCACTTATATGGTATCCAACTCAACTTGAAATCACATAAAATGTTGC
TGCAATTAGCAGAAAGTATTGGCCGTAATCATGTCGACCCTAAATACGAT
TCGATGACAGGAGACAACTTGGATTTTGAACGTGTTTTCAAACATTTCGA
CCGTCGGTGGTGCCCGACGAACCCTCTACCGGCTGATCCAGGTGAAGGAC
AATTCCAATCGGACTGATCTCGAGGTATTACCCCTCCCAAGTCGCCACCA
TCACCAGCTCGAACAGCGTTTCAGCATCAACGACGAAGTACAGCATCATC
AACACCAGCGCCAGCAACTAGTAGCCTCTACAACGATGGATGAATTGGCC
GCTTTGATGTCGCAGGCATTAGCGACCGTAGCGATGGCGTCGGCAGTATC
GACGGTAGCAGAACCAACAGCCACTACCACCGACGTCAAGGAGCTACCAC
TACCACTACCAGCAAGCGCAAAAGCTCCAACAACAGCGCCTTCGAAGAGC
GTCAATACTACCACCACGCCTCCTCAGCCGCGGGAGCAAAACTCTAATTC
GACGTTTCACGAGGCCAATTCCGATAACATAGACCTTCGCAGTTTCGCCA
ACGAGATTGACGGTCGCTGTGCAGCGGCCGTCAAAACTCTCCACGCCGCG
TCCCGGGCCGTCATAAGCCCCGGAGAAGAACTCAACCATTCGTACGAGGC
CTACTCCTCCGCGTTCTGCTCTCTACAAGAAGCCGAACGCTCCGTGCGCT
GTGCCGAAGAGG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig8650:3439..6200-

>mRNA_L-elsbetiae_contig8650.17690.1 ID=mRNA_L-elsbetiae_contig8650.17690.1|Name=mRNA_L-elsbetiae_contig8650.17690.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1536bp|location=Sequence derived from alignment at L-elsbetiae_contig8650:3439..6200- (Laminarionema elsbetiae ELsaHSoW15)
GATGCCAGGGGAAGCGTAACGCGCATTTTGAGCAAAGTCGAAAGACTCGA
TTGGGTCGACCAGGAGGGGGCACCAATGGCGGGAGTCGGCAGAGCTGATA
TTACCACTGGTCTTAATATTTGGTCGGTGTCAAGGGAAGGCCAAGGCCGC
ATAAAAAGGCTTCGGGATGGCGGAGTGCCGGAGGGAGGACAAGAAAAGGA
TGCCAGGGGAAGCGTAACGCGCATTTTGAGCAAAGTCGAAAGACTCGATT
GGGTCGACCAGGAGGGGGCACCAATGGCGGGAGTCGGCAGAGCTGATATT
ACCACTGGTCTTAATATTTGGTCGGTGTCAAGGGAAGGCCAAGGCCGCAT
AAAAAGGCTTCGGGATGGCGGAGTGCCGGAGGGAGGACAAGAAAAGGTGA
AGGACAATTCCAATCGGACTGATCTCGAGGTATTACCCCTCCCAAGTCGC
CACCATCACCAGCTCGAACAGCGTTTCAGCATCAACGACGAAGTACAGCA
TCATCAACACCAGCGCCAGCAACTAGTAGCCTCTACAACGATGGATGAAT
TGGCCGCTTTGATGTCGCAGGCATTAGCGACCGTAGCGATGGCGTCGGCA
GTATCGACGGTAGCAGAACCAACAGCCACTACCACCGACGTCAAGGAGCT
ACCACTACCACTACCAGCAAGCGCAAAAGCTCCAACAACAGCGCCTTCGA
AGAGCGTCAATACTACCACCACGCCTCCTCAGCCGCGGGAGCAAAACTCT
AATTCGACGTTTCACGAGGCCAATTCCGATAACATAGACCTTCGCAGTTT
CGCCAACGAGATTGACGGTCGCTGTGCAGCGGCCGTCAAAACTCTCCACG
CCGCGTCCCGGGCCGTCATAAGCCCCGGAGAAGAACTCAACCATTCGTAC
GAGGCCTACTCCTCCGCGTTCTGCTCTCTACAAGAAGCCGAACGCTCCGT
GCGCTGTGCCGAAGAGGTGAAGGACAATTCCAATCGGACTGATCTCGAGG
TATTACCCCTCCCAAGTCGCCACCATCACCAGCTCGAACAGCGTTTCAGC
ATCAACGACGAAGTACAGCATCATCAACACCAGCGCCAGCAACTAGTAGC
CTCTACAACGATGGATGAATTGGCCGCTTTGATGTCGCAGGCATTAGCGA
CCGTAGCGATGGCGTCGGCAGTATCGACGGTAGCAGAACCAACAGCCACT
ACCACCGACGTCAAGGAGCTACCACTACCACTACCAGCAAGCGCAAAAGC
TCCAACAACAGCGCCTTCGAAGAGCGTCAATACTACCACCACGCCTCCTC
AGCCGCGGGAGCAAAACTCTAATTCGACGTTTCACGAGGCCAATTCCGAT
AACATAGACCTTCGCAGTTTCGCCAACGAGATTGACGGTCGCTGTGCAGC
GGCCGTCAAAACTCTCCACGCCGCGTCCCGGGCCGTCATAAGCCCCGGAG
AAGAACTCAACCATTCGTACGAGGCCTACTCCTCCGCGTTCTGCTCTCTA
CAAGAAGCCGAACGCTCCGTGCGCTGTGCCGAAGAG
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