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Homology
BLAST of mRNA_L-elsbetiae_contig8629.17664.1 vs. uniprot
Match: D7FRF2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FRF2_ECTSI) HSP 1 Score: 89.4 bits (220), Expect = 2.180e-18 Identity = 54/77 (70.13%), Postives = 56/77 (72.73%), Query Frame = 1
Query: 1 GGGGETGNSGSVRMDDG-QAPADLSSVVLVSSLSSTPGIRRSGSGRWATGAGGG---QALMGRVDLGVDDLSAAHWE 219
GG G G G R D Q+PADLSSVVLVSSLSSTPG R+SGSGRWA G G G Q MG VDLGVDDLSAAHWE
Sbjct: 405 GGIGRGGEMGGARHGDAEQSPADLSSVVLVSSLSSTPGRRKSGSGRWAKGQGQGGVTQTRMGGVDLGVDDLSAAHWE 481
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Hectar predicted targeting category | other localisation |
| Exons | 3 |
| Model size | 354 |
| Cds size | 354 |
| Stop | 0 |
| Start | 0 |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| 1622816944.7525756-CDS-L-elsbetiae_contig8629:3187..3295 | 1622816944.7525756-CDS-L-elsbetiae_contig8629:3187..3295 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig8629 3188..3295 - |
| 1691683931.2579591-CDS-L-elsbetiae_contig8629:3187..3295 | 1691683931.2579591-CDS-L-elsbetiae_contig8629:3187..3295 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig8629 3188..3295 - |
| 1622816944.7652664-CDS-L-elsbetiae_contig8629:3869..4051 | 1622816944.7652664-CDS-L-elsbetiae_contig8629:3869..4051 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig8629 3870..4051 - |
| 1691683931.273205-CDS-L-elsbetiae_contig8629:3869..4051 | 1691683931.273205-CDS-L-elsbetiae_contig8629:3869..4051 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig8629 3870..4051 - |
| 1622816944.7755084-CDS-L-elsbetiae_contig8629:4766..4830 | 1622816944.7755084-CDS-L-elsbetiae_contig8629:4766..4830 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig8629 4767..4830 - |
| 1691683931.2828677-CDS-L-elsbetiae_contig8629:4766..4830 | 1691683931.2828677-CDS-L-elsbetiae_contig8629:4766..4830 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig8629 4767..4830 - |
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_L-elsbetiae_contig8629.17664.1 >prot_L-elsbetiae_contig8629.17664.1 ID=prot_L-elsbetiae_contig8629.17664.1|Name=mRNA_L-elsbetiae_contig8629.17664.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=118bp
GGGGETGNSGSVRMDDGQAPADLSSVVLVSSLSSTPGIRRSGSGRWATGA
GGGQALMGRVDLGVDDLSAAHWELTEAERALEARERGLDRRERSAGESDA
RAEQRHREEARRLEQAEG back to topmRNA from alignment at L-elsbetiae_contig8629:3188..4830- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_L-elsbetiae_contig8629.17664.1 ID=mRNA_L-elsbetiae_contig8629.17664.1|Name=mRNA_L-elsbetiae_contig8629.17664.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1643bp|location=Sequence derived from alignment at L-elsbetiae_contig8629:3188..4830- (Laminarionema elsbetiae ELsaHSoW15)
GGTGGTGGTGGCGAAACGGGGAACAGCGGCAGCGTGCGGATGGATGATGG
ACAGGCTCCTGCCGGTGAGCGGTTCTTGTTGTGGTGTTCACCCCCGTTAC
GTGTATTTATTTGTTTTTAGCGTGCAATATGTCTTTGCCTGTGGGTGCGA
AAAGGGGGGGCTGATTCATGTTTCACCGTCGGAATTCTTGTCCGCGGTTG
TCGTGGATGGAGTGGCTTTGAGGCCGGCGGGCCCGGCATGGGAGCACAGG
GGTGGCAATTCGCTGCCGACTCTTGAGGGGCCAAGCAGACTCCGCACAGG
CCGTGTCGTTGAGGAGCGTCGGAGTTGTATATACGGCGGCAGAAATGATG
CTTCGTCCCCCCCCCCCCCGCTCTTTTGGTGACAGATAAATACCCTTTCC
CGCGTGTCGGGCGGGGATGGAGTGTATGGTACTCATTTTTTGCGGTTGGG
CACGGGGGGGGCACCGGGTGGCTGGCTTCCCCTCTGCGTCTCTCCTGTTG
ACGAGGGCAATCTCTCCGGTTTCGCGCTCGCCGCTTTGTCGTGGCACCTT
TCCACCCGAGCACGTAAAGGGAGCTAAATACTGGCTTGCCCTTCCTCCTC
CTCCTCCGCCGCCGCCCCCCGGCGGCCCTCCCGCACGTATCCCGCTCTTT
GTCCTTCCTACCCCGCCGGACCACGGTGCCCCTCTCCGCCGACCCCCCCA
CCCACCTCGCCCGCCCCCCGTGATTCGTGCCCAACTTCCACCGCCGCCGT
GGTGGCTTCGGCGTTCCGGACTTGATCAGACTTGAGCAGCGTGGTGCTGG
TGTCGAGCCTCAGCAGCACCCCGGGGATAAGGAGAAGCGGCTCGGGCCGG
TGGGCGACGGGGGCCGGTGGAGGGCAGGCTTTGATGGGGCGGGTTGACCT
TGGCGTCGACGACCTGTCCGCGGCTCACTGGGAACTCACGGAGGCGGAAC
GAGCGCTGGAGGTGGGGCGCCGCGGTTGTTTGCGAAGCGCAGGGAAGAGG
GGGGGGGGGGGGTGAGGCCGTGCTCTGCTCGAGGCCAACGCGAAGCAGAG
GCGTGGGAGCGGTTGTTTTGTTGTTGGAAGACCTGAATTGGGTGCAGGAA
GAGGGTTCGCGCAAGTTGACATTTTCGTCTCACATTGATCGGTCCCATGC
ATGTATATATAATGCTTGTATATATCTTTGTAGACAACGTCCATATGAAC
GTATCAAGCCCACAGAAAAAAGGGTCCCATACCTATTAGGACGAGTCGGG
CTTCCGCCTGAAACAGACCGGGTGTTGGGCTACTACATACTACATACATA
CGCAGTACATGCGACATATCGTCGAACGGTGGAGCAAAAACCATACCATA
GACAACCACCGCTCCACCGCTACCCCCCTTCTATCTCAACCCCCCCCCCA
CGCGCGCGCGCGCGCGCGCGCCCTCTATCTCTATCTCTAACTCTCCACCC
TCTCTCTCCACGCACGCTTTCTCTCTCTCTCGGCGCCGCTGCTGCTGCTG
CTGCTGCTGCTGCTGAAACGCTGAAATGCCCCAAGGCGCGGGAGCGAGGG
CTCGACCGGCGGGAGCGGAGCGCCGGCGAGTCCGACGCGCGGGCCGAGCA
GAGGCACCGCGAGGAGGCCCGCAGGCTGGAACAGGCGGAGGGG back to topCoding sequence (CDS) from alignment at L-elsbetiae_contig8629:3188..4830- >mRNA_L-elsbetiae_contig8629.17664.1 ID=mRNA_L-elsbetiae_contig8629.17664.1|Name=mRNA_L-elsbetiae_contig8629.17664.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=708bp|location=Sequence derived from alignment at L-elsbetiae_contig8629:3188..4830- (Laminarionema elsbetiae ELsaHSoW15)
GGTGGTGGTGGCGAAACGGGGAACAGCGGCAGCGTGCGGATGGATGATGG
ACAGGCTCCTGCCGGGTGGTGGTGGCGAAACGGGGAACAGCGGCAGCGTG
CGGATGGATGATGGACAGGCTCCTGCCGACTTGAGCAGCGTGGTGCTGGT
GTCGAGCCTCAGCAGCACCCCGGGGATAAGGAGAAGCGGCTCGGGCCGGT
GGGCGACGGGGGCCGGTGGAGGGCAGGCTTTGATGGGGCGGGTTGACCTT
GGCGTCGACGACCTGTCCGCGGCTCACTGGGAACTCACGGAGGCGGAACG
AGCGCTGGAGACTTGAGCAGCGTGGTGCTGGTGTCGAGCCTCAGCAGCAC
CCCGGGGATAAGGAGAAGCGGCTCGGGCCGGTGGGCGACGGGGGCCGGTG
GAGGGCAGGCTTTGATGGGGCGGGTTGACCTTGGCGTCGACGACCTGTCC
GCGGCTCACTGGGAACTCACGGAGGCGGAACGAGCGCTGGAGGCGCGGGA
GCGAGGGCTCGACCGGCGGGAGCGGAGCGCCGGCGAGTCCGACGCGCGGG
CCGAGCAGAGGCACCGCGAGGAGGCCCGCAGGCTGGAACAGGCGGAGGGG
GCGCGGGAGCGAGGGCTCGACCGGCGGGAGCGGAGCGCCGGCGAGTCCGA
CGCGCGGGCCGAGCAGAGGCACCGCGAGGAGGCCCGCAGGCTGGAACAGG
CGGAGGGG back to top
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