prot_L-elsbetiae_contig8613.17648.1 (polypeptide) Laminarionema elsbetiae ELsaHSoW15

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_L-elsbetiae_contig8613.17648.1
Unique Nameprot_L-elsbetiae_contig8613.17648.1
Typepolypeptide
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Sequence length305
Homology
BLAST of mRNA_L-elsbetiae_contig8613.17648.1 vs. uniprot
Match: A0A6H5K7W3_9PHAE (PUM-HD domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K7W3_9PHAE)

HSP 1 Score: 260 bits (665), Expect = 4.560e-77
Identity = 176/295 (59.66%), Postives = 196/295 (66.44%), Query Frame = 0
Query:    1 MTHRNGCKLLLRLLAPDHTGYLHPEELELLKPTLVPSAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRELLAYLREPLREACAAGAGDLMRSKHAGALVLLEAVRAIGTPRVVEAVAGAACAKPLEMQLPMFEDPTGHLFMKQLLQREAEAQKGQQGANEAENASXXXXXXXXXXGGPWFADALLKRAGGELSAWACKNRGGFVVAALEGVPSASAGVRKVLGAKAARARLVKDAKAGGSMGAKVLAEQLGFGDFGAKEAAA 295
            M H+NGCKLLLRLLAPDHTGYLHPEELELLKPT+VPS   XXXXXXXXXXXXXXX                                             RELLA+LREPLREACA  A  LMRSK AG++VLLEA+RAIGTP+VV AV  AAC KP   +LPM EDP+ HLFMKQLL+REAEAQK + GA+ A + S              FADALL++AGG+LSAW   NRG FVV AL  VPS  A VR+ LG KAARARLV +A  G +MG KVLAE+LGFGDFGAKEAAA
Sbjct:  570 MCHKNGCKLLLRLLAPDHTGYLHPEELELLKPTMVPSPAAXXXXXXXXXXXXXXXPKAGGEGTEVPLVPSSRKEASVRR---------------------RELLAFLREPLREACATHAPMLMRSKCAGSVVLLEAIRAIGTPQVVAAVVKAACGKPRVGKLPMHEDPSAHLFMKQLLEREAEAQKAKDGADSAADTSDTLS----------FADALLEKAGGQLSAWISTNRGAFVVTALAEVPSTGAAVREELGTKAARARLVMEATEGNNMGTKVLAERLGFGDFGAKEAAA 833          
BLAST of mRNA_L-elsbetiae_contig8613.17648.1 vs. uniprot
Match: D7FHP3_ECTSI (PUM-HD domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FHP3_ECTSI)

HSP 1 Score: 245 bits (625), Expect = 1.610e-71
Identity = 171/297 (57.58%), Postives = 192/297 (64.65%), Query Frame = 0
Query:    1 MTHRNGCKLLLRLLAPDHTGY-----LHPEELELLKPTLVPSAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRELLAYLREPLREACAAGAGDLMRSKHAGALVLLEAVRAIGTPRVVEAVAGAACAKPLEMQLPMFEDPTGHLFMKQLLQREAEAQKGQQGANEAENASXXXXXXXXXXGGPWFADALLKRAGGELSAWACKNRGGFVVAALEGVPSASAGVRKVLGAKAARARLVKDAKAGGSMGAKVLAEQLGFGDFGAKE 292
            M H NGCKLLLRLLAPD TGY     LHPEELELLKPT+VPS    XXXXXXXXXXXXXXX                                            RELLAYLREPLREACA  A  LMRSK AG++VLLEA+RAIGTP +V AV  AACAK    +LPM EDP+ HLFMKQLL+REAEAQK + GA+ A   S            P FADALL++AGG+LS+W+  NRGGFVV AL  VPS  A VR+ LG K ARARLVK+A  G +MG KVLAE+LGFGDFGA++
Sbjct:  527 MGHTNGCKLLLRLLAPDRTGYAFFRYLHPEELELLKPTMVPSPAAAXXXXXXXXXXXXXXXTKAGGQGTEVPLVPSSRKEASVRR--------------------RELLAYLREPLREACATYAPMLMRSKCAGSVVLLEAIRAIGTPEIVAAVVEAACAKSHVGKLPMHEDPSAHLFMKQLLEREAEAQKAKGGADSAAATSDT----------PSFADALLEKAGGQLSSWSSTNRGGFVVTALAEVPSTGAAVREELGTKTARARLVKEATEGNNMGTKVLAERLGFGDFGARK 793          
BLAST of mRNA_L-elsbetiae_contig8613.17648.1 vs. uniprot
Match: A0A835Z7T9_9STRA (Armadillo-type protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z7T9_9STRA)

HSP 1 Score: 139 bits (351), Expect = 2.530e-33
Identity = 118/285 (41.40%), Postives = 132/285 (46.32%), Query Frame = 0
Query:    3 HRNGCKLLLRLLAPDHTGYLHPEELELLKPTLVPSAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRELLAYLREPLREACAAGAGDLMRSKHAGALVLLEAVRAIGTPRVVEAVAGAACAKPLEMQLPMFEDPTGHLFMKQLLQREAEAQKGQQGANEAENASXXXXXXXXXXGGPWFADALLKRA----GGELSAWACKNRGGFVVAALEGVPSASAGVRKVLGAKAARARLVKDAKAGGSMGAKVLAEQL 283
            HRNGCKLLL L APD T YL PEE  LL+P +VP A                                                              +ELLA+L+ PL+  C     +LMRSK AGA VLLE  + + TP +V A+A AA A P E  L M EDP GHLFMKQLL  E E                  XXXXXXX   WFADALLKR     GG L  WA  NRG FV+AAL GVPSA A VRK L  +   A         G  GA+VLA  L
Sbjct:  622 HRNGCKLLLYLAAPDATKYLDPEERHLLEPAMVPVAQGEGEAPVLVCASKKDPEVRR-----------------------------------------QELLAFLKAPLQSLCQEHTAELMRSKFAGANVLLEVTKNLRTPDLVAAIAAAAVAVPEEGHLAMQEDPAGHLFMKQLLLWEGEQ-----------------XXXXXXXXAGWFADALLKRLQAGDGGGLRGWAGSNRGAFVLAALAGVPSAGAAVRKALKGRTPPAE--------GGKGAEVLAAAL 840          
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig8613.17648.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A6H5K7W3_9PHAE4.560e-7759.66PUM-HD domain-containing protein n=1 Tax=Ectocarpu... [more]
D7FHP3_ECTSI1.610e-7157.58PUM-HD domain-containing protein n=1 Tax=Ectocarpu... [more]
A0A835Z7T9_9STRA2.530e-3341.40Armadillo-type protein n=1 Tax=Tribonema minus Tax... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR012959CPL domainPFAMPF08144CPLcoord: 91..183
e-value: 3.6E-8
score: 33.8
IPR040059Pumilio homologue 3PANTHERPTHR13389UNCHARACTERIZEDcoord: 2..283
NoneNo IPR availablePANTHERPTHR13389:SF0PUMILIO HOMOLOG 3coord: 2..283

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig8613contigL-elsbetiae_contig8613:1415..5996 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig8613.17648.1mRNA_L-elsbetiae_contig8613.17648.1Laminarionema elsbetiae ELsaHSoW15mRNAL-elsbetiae_contig8613 1391..7204 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_L-elsbetiae_contig8613.17648.1 ID=prot_L-elsbetiae_contig8613.17648.1|Name=mRNA_L-elsbetiae_contig8613.17648.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=305bp
MTHRNGCKLLLRLLAPDHTGYLHPEELELLKPTLVPSAAAAAAGKPTAAA
SGGASDSPAAAAAAAAAAKDKGQNSSAAAEEESAVVALVPSSKKEAAVRR
RELLAYLREPLREACAAGAGDLMRSKHAGALVLLEAVRAIGTPRVVEAVA
GAACAKPLEMQLPMFEDPTGHLFMKQLLQREAEAQKGQQGANEAENASSS
GGGGGGASGGPWFADALLKRAGGELSAWACKNRGGFVVAALEGVPSASAG
VRKVLGAKAARARLVKDAKAGGSMGAKVLAEQLGFGDFGAKEAAAALASK
RSAK*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR012959CPL_dom
IPR040059PUM3