mRNA_L-elsbetiae_contig857.17610.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig857.17610.1
Unique NamemRNA_L-elsbetiae_contig857.17610.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig857.17610.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig857contigL-elsbetiae_contig857:26486..26868 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size384
Cds size327
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816939.5320954-CDS-L-elsbetiae_contig857:26485..268121622816939.5320954-CDS-L-elsbetiae_contig857:26485..26812Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig857 26486..26812 +
1691683927.568796-CDS-L-elsbetiae_contig857:26485..268121691683927.568796-CDS-L-elsbetiae_contig857:26485..26812Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig857 26486..26812 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816939.5432496-UTR-L-elsbetiae_contig857:26812..268681622816939.5432496-UTR-L-elsbetiae_contig857:26812..26868Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig857 26813..26868 +
1691683927.5812554-UTR-L-elsbetiae_contig857:26812..268681691683927.5812554-UTR-L-elsbetiae_contig857:26812..26868Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig857 26813..26868 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig857.17610.1prot_L-elsbetiae_contig857.17610.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig857 26486..26812 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig857.17610.1

>prot_L-elsbetiae_contig857.17610.1 ID=prot_L-elsbetiae_contig857.17610.1|Name=mRNA_L-elsbetiae_contig857.17610.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=109bp
PYLGWGRGGASYLRGAFSRDTTVITHGTQRFGIPHARVQPKDVWQKTTSH
ARNGTTIVIYKTSRINCIHTQNRSPPTISALPLWGMRLRWRRYNFMNAQN
EQFAVLAF*
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mRNA from alignment at L-elsbetiae_contig857:26486..26868+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig857.17610.1 ID=mRNA_L-elsbetiae_contig857.17610.1|Name=mRNA_L-elsbetiae_contig857.17610.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=383bp|location=Sequence derived from alignment at L-elsbetiae_contig857:26486..26868+ (Laminarionema elsbetiae ELsaHSoW15)
CCGTATTTGGGGTGGGGGAGGGGGGGGGCGTCCTATCTGAGGGGGGCGTT
CTCAAGGGATACTACGGTAATTACACACGGAACACAGCGTTTCGGCATAC
CTCACGCTCGTGTCCAGCCCAAAGACGTTTGGCAAAAAACAACATCCCAC
GCGAGAAACGGCACAACGATCGTTATATACAAGACCAGTCGGATTAATTG
CATCCACACCCAAAATCGAAGCCCCCCTACCATATCGGCGCTGCCTCTCT
GGGGTATGCGACTTCGTTGGCGGCGATATAACTTCATGAATGCGCAAAAC
GAACAATTTGCGGTGCTTGCTTTTTGAGAATTTCACGGGGAACATGCATG
TCATCGAGCCGAGATAATACGCCAGGAAATCCC
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Coding sequence (CDS) from alignment at L-elsbetiae_contig857:26486..26868+

>mRNA_L-elsbetiae_contig857.17610.1 ID=mRNA_L-elsbetiae_contig857.17610.1|Name=mRNA_L-elsbetiae_contig857.17610.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=654bp|location=Sequence derived from alignment at L-elsbetiae_contig857:26486..26868+ (Laminarionema elsbetiae ELsaHSoW15)
CCGTATTTGGGGTGGGGGAGGGGGGGGGCGTCCTATCTGAGGGGGGCGTT
CTCAAGGGATACTACGGTAATTACACACGGAACACAGCGTTTCGGCATAC
CTCACGCTCGTGTCCAGCCCAAAGACGTTTGGCAAAAAACAACATCCCAC
GCGAGAAACGGCACAACGATCGTTATATACAAGACCAGTCGGATTAATTG
CATCCACACCCAAAATCGAAGCCCCCCTACCATATCGGCGCTGCCTCTCT
GGGGTATGCGACTTCGTTGGCGGCGATATAACTTCATGAATGCGCAAAAC
GAACAATTTGCGGTGCTTGCTTTTTGACCGTATTTGGGGTGGGGGAGGGG
GGGGGCGTCCTATCTGAGGGGGGCGTTCTCAAGGGATACTACGGTAATTA
CACACGGAACACAGCGTTTCGGCATACCTCACGCTCGTGTCCAGCCCAAA
GACGTTTGGCAAAAAACAACATCCCACGCGAGAAACGGCACAACGATCGT
TATATACAAGACCAGTCGGATTAATTGCATCCACACCCAAAATCGAAGCC
CCCCTACCATATCGGCGCTGCCTCTCTGGGGTATGCGACTTCGTTGGCGG
CGATATAACTTCATGAATGCGCAAAACGAACAATTTGCGGTGCTTGCTTT
TTGA
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