prot_L-elsbetiae_contig12044.1727.1 (polypeptide) Laminarionema elsbetiae ELsaHSoW15

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_L-elsbetiae_contig12044.1727.1
Unique Nameprot_L-elsbetiae_contig12044.1727.1
Typepolypeptide
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Sequence length154
Homology
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BLAST of mRNA_L-elsbetiae_contig12044.1727.1 vs. uniprot
Match: D8LMW5_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LMW5_ECTSI)

HSP 1 Score: 97.1 bits (240), Expect = 9.590e-23
Identity = 56/80 (70.00%), Postives = 61/80 (76.25%), Query Frame = 0 
Query:   44 LSPVSSTLSSS-----------LRAAKHADRVSPLFGIKRKVKAEMESNFSGKVVEPAGAETSMFGSDANALFDVIEKNK 112
            LSP S+ LSSS            R+AK A+R++PL GIKRKVK EME NFSGKVVEPAGA TSMFGSDANALFDVIEKNK
Sbjct:   33 LSPASAFLSSSPPRXXXXXXXXXRSAKRAERLAPLHGIKRKVKVEMEENFSGKVVEPAGAATSMFGSDANALFDVIEKNK 112
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig12044.1727.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LMW5_ECTSI9.590e-2370.00Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_N_REGIONSignal peptide N-regioncoord: 1..21
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_C_REGIONSignal peptide C-regioncoord: 35..42
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_H_REGIONSignal peptide H-regioncoord: 22..34
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 43..153
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDESignal Peptidecoord: 1..42
NoneNo IPR availableSIGNALP_EUKSignalP-noTMSignalP-noTMcoord: 1..42
score: 0.606
NoneNo IPR availableTMHMMTMhelixcoord: 21..43

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig12044contigL-elsbetiae_contig12044:667..1630 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig12044.1727.1mRNA_L-elsbetiae_contig12044.1727.1Laminarionema elsbetiae ELsaHSoW15mRNAL-elsbetiae_contig12044 667..1630 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_L-elsbetiae_contig12044.1727.1 ID=prot_L-elsbetiae_contig12044.1727.1|Name=mRNA_L-elsbetiae_contig12044.1727.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=154bp
MSSQRTFGRRSSRSRGRSLNWALTFLSSALLAALSHVTPASAFLSPVSST
LSSSLRAAKHADRVSPLFGIKRKVKAEMESNFSGKVVEPAGAETSMFGSD
ANALFDVIEKNKKKAAEAAAAALAGGDEDEGGEEGGAAQGGGAGDTEESG
KTA*
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