mRNA_L-elsbetiae_contig12031.1722.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig12031.1722.1
Unique NamemRNA_L-elsbetiae_contig12031.1722.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig12031.1722.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig12031contigL-elsbetiae_contig12031:1945..2730 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size786
Cds size723
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig12031.1722.1prot_L-elsbetiae_contig12031.1722.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig12031 1977..2699 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815403.9439814-UTR-L-elsbetiae_contig12031:1944..19761622815403.9439814-UTR-L-elsbetiae_contig12031:1944..1976Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig12031 1945..1976 +
1691682882.8477695-UTR-L-elsbetiae_contig12031:1944..19761691682882.8477695-UTR-L-elsbetiae_contig12031:1944..1976Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig12031 1945..1976 +
1622815403.96545-UTR-L-elsbetiae_contig12031:2699..27301622815403.96545-UTR-L-elsbetiae_contig12031:2699..2730Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig12031 2700..2730 +
1691682882.8687577-UTR-L-elsbetiae_contig12031:2699..27301691682882.8687577-UTR-L-elsbetiae_contig12031:2699..2730Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig12031 2700..2730 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815403.9527566-CDS-L-elsbetiae_contig12031:1976..26991622815403.9527566-CDS-L-elsbetiae_contig12031:1976..2699Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig12031 1977..2699 +
1691682882.859434-CDS-L-elsbetiae_contig12031:1976..26991691682882.859434-CDS-L-elsbetiae_contig12031:1976..2699Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig12031 1977..2699 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig12031.1722.1

>prot_L-elsbetiae_contig12031.1722.1 ID=prot_L-elsbetiae_contig12031.1722.1|Name=mRNA_L-elsbetiae_contig12031.1722.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=241bp
MASSQPALQPCQDVSTASERDPLVDSGAETNETTANLARGNQEREAETPG
SACIPERPVANSRADSLCGRLWTGTTASPKSEVVRPRILFLVSGQQQQIQ
DPPRTTIPPPCGERRRSHKHNTRSDPVITPFPPPARARNSKTAVPRGRTE
TAASSGWRCDDARIGQESESEGRGGEERDNVLPPGSGCGLGDGEECYDAA
TTAATDGKGDDSVRRVLHVRVPHPPPTSLLVFRSPPPTTP*
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mRNA from alignment at L-elsbetiae_contig12031:1945..2730+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig12031.1722.1 ID=mRNA_L-elsbetiae_contig12031.1722.1|Name=mRNA_L-elsbetiae_contig12031.1722.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=786bp|location=Sequence derived from alignment at L-elsbetiae_contig12031:1945..2730+ (Laminarionema elsbetiae ELsaHSoW15)
GCGGTGCCGCCGCAGCTACCGAGTGCAACGCTATGGCCTCGAGTCAACCA
GCATTGCAACCCTGCCAGGATGTGTCAACGGCGTCGGAACGAGATCCCCT
GGTCGATTCCGGTGCCGAAACCAACGAAACCACAGCGAACTTAGCTCGGG
GCAACCAAGAGAGAGAGGCAGAAACACCGGGTTCAGCGTGCATCCCAGAA
CGCCCGGTGGCGAACTCGCGGGCAGATTCCCTCTGCGGTCGCTTGTGGAC
GGGAACAACCGCGTCCCCAAAGTCGGAGGTGGTGCGGCCGCGTATTCTCT
TTCTAGTGTCCGGTCAACAGCAGCAAATACAAGATCCTCCTCGAACAACA
ATACCACCACCTTGCGGCGAGAGACGGCGAAGCCATAAGCACAACACCCG
TAGTGATCCGGTTATCACCCCGTTTCCACCACCTGCGAGAGCCAGGAACT
CTAAAACTGCTGTGCCTCGAGGCAGAACAGAAACGGCTGCATCCAGCGGA
TGGCGCTGCGATGACGCTAGGATAGGCCAAGAAAGTGAGAGTGAAGGGCG
GGGCGGAGAGGAGAGAGACAACGTGCTTCCGCCTGGATCAGGGTGCGGGC
TCGGGGATGGTGAGGAGTGCTACGATGCAGCGACAACGGCCGCCACAGAT
GGGAAAGGGGATGATAGCGTGAGGAGAGTGCTTCACGTAAGAGTGCCGCA
CCCGCCTCCCACGTCACTGCTAGTTTTTAGGTCGCCCCCGCCTACAACGC
CATAGAGAACGTGTAACCGGCCACTGATATGTTCAA
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Coding sequence (CDS) from alignment at L-elsbetiae_contig12031:1945..2730+

>mRNA_L-elsbetiae_contig12031.1722.1 ID=mRNA_L-elsbetiae_contig12031.1722.1|Name=mRNA_L-elsbetiae_contig12031.1722.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1446bp|location=Sequence derived from alignment at L-elsbetiae_contig12031:1945..2730+ (Laminarionema elsbetiae ELsaHSoW15)
ATGGCCTCGAGTCAACCAGCATTGCAACCCTGCCAGGATGTGTCAACGGC
GTCGGAACGAGATCCCCTGGTCGATTCCGGTGCCGAAACCAACGAAACCA
CAGCGAACTTAGCTCGGGGCAACCAAGAGAGAGAGGCAGAAACACCGGGT
TCAGCGTGCATCCCAGAACGCCCGGTGGCGAACTCGCGGGCAGATTCCCT
CTGCGGTCGCTTGTGGACGGGAACAACCGCGTCCCCAAAGTCGGAGGTGG
TGCGGCCGCGTATTCTCTTTCTAGTGTCCGGTCAACAGCAGCAAATACAA
GATCCTCCTCGAACAACAATACCACCACCTTGCGGCGAGAGACGGCGAAG
CCATAAGCACAACACCCGTAGTGATCCGGTTATCACCCCGTTTCCACCAC
CTGCGAGAGCCAGGAACTCTAAAACTGCTGTGCCTCGAGGCAGAACAGAA
ACGGCTGCATCCAGCGGATGGCGCTGCGATGACGCTAGGATAGGCCAAGA
AAGTGAGAGTGAAGGGCGGGGCGGAGAGGAGAGAGACAACGTGCTTCCGC
CTGGATCAGGGTGCGGGCTCGGGGATGGTGAGGAGTGCTACGATGCAGCG
ACAACGGCCGCCACAGATGGGAAAGGGGATGATAGCGTGAGGAGAGTGCT
TCACGTAAGAGTGCCGCACCCGCCTCCCACGTCACTGCTAGTTTTTAGGT
CGCCCCCGCCTACAACGCCATAGATGGCCTCGAGTCAACCAGCATTGCAA
CCCTGCCAGGATGTGTCAACGGCGTCGGAACGAGATCCCCTGGTCGATTC
CGGTGCCGAAACCAACGAAACCACAGCGAACTTAGCTCGGGGCAACCAAG
AGAGAGAGGCAGAAACACCGGGTTCAGCGTGCATCCCAGAACGCCCGGTG
GCGAACTCGCGGGCAGATTCCCTCTGCGGTCGCTTGTGGACGGGAACAAC
CGCGTCCCCAAAGTCGGAGGTGGTGCGGCCGCGTATTCTCTTTCTAGTGT
CCGGTCAACAGCAGCAAATACAAGATCCTCCTCGAACAACAATACCACCA
CCTTGCGGCGAGAGACGGCGAAGCCATAAGCACAACACCCGTAGTGATCC
GGTTATCACCCCGTTTCCACCACCTGCGAGAGCCAGGAACTCTAAAACTG
CTGTGCCTCGAGGCAGAACAGAAACGGCTGCATCCAGCGGATGGCGCTGC
GATGACGCTAGGATAGGCCAAGAAAGTGAGAGTGAAGGGCGGGGCGGAGA
GGAGAGAGACAACGTGCTTCCGCCTGGATCAGGGTGCGGGCTCGGGGATG
GTGAGGAGTGCTACGATGCAGCGACAACGGCCGCCACAGATGGGAAAGGG
GATGATAGCGTGAGGAGAGTGCTTCACGTAAGAGTGCCGCACCCGCCTCC
CACGTCACTGCTAGTTTTTAGGTCGCCCCCGCCTACAACGCCATAG
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