mRNA_L-elsbetiae_contig8046.17034.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15
Overview
Homology
BLAST of mRNA_L-elsbetiae_contig8046.17034.1 vs. uniprot
Match: D8LEJ6_ECTSI (p28, 28 kDa light chain of axonemal inner dynein arms n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LEJ6_ECTSI) HSP 1 Score: 422 bits (1085), Expect = 2.320e-146 Identity = 229/272 (84.19%), Postives = 237/272 (87.13%), Query Frame = 1 Query: 1 NMDAGPDIAQQGMQFPMDVPPTLVKFDPPIFAGLEPSSEANSNRIN-----NNSGNEPRGGGXXXXXXXXXGNHGKTSQLDDMVNSMLPPREWTEETGTWMQYVSKDPATRLAVITLQEQLDKKLLERQALETGICPVREDLYTQAFDELIRHVTLDGPERGLLCLRVRDEIRMTIDAYKTLYDSSVTFGVKKQLQAEQGMAEMEDQIARLEENKKELELHVSELRNKVEVIEKGESERRAVDDKKRKEEVDFLKYQGQHLDSFLKQIGGSK 801 N+ GPD+ QQGMQFPM+VP TLVKFDPPIFAGLEPSS+ N+ N N G XXXX G GK SQLDDMVNSMLPPREWTEETGTWMQYVSK+PATRLAVI LQEQLD KLLERQALETGICPVREDLYTQAFDELIRHVTLDGPERGLLCLRVRDEIRMTIDAYKTLYDSSVTFGVKKQLQAEQGMAEME+QIA L E+KK LELHVSELRNKVEVIEKGESERRAVDDKKRKEEVDFLKYQGQHLDSFLKQIGGSK Sbjct: 4 NVGRGPDMTQQGMQFPMEVPQTLVKFDPPIFAGLEPSSDPNNGGDNALLMGGNGGXXXX----XXXXMGGKGQQGKASQLDDMVNSMLPPREWTEETGTWMQYVSKEPATRLAVIALQEQLDNKLLERQALETGICPVREDLYTQAFDELIRHVTLDGPERGLLCLRVRDEIRMTIDAYKTLYDSSVTFGVKKQLQAEQGMAEMEEQIAALGEDKKGLELHVSELRNKVEVIEKGESERRAVDDKKRKEEVDFLKYQGQHLDSFLKQIGGSK 271
BLAST of mRNA_L-elsbetiae_contig8046.17034.1 vs. uniprot
Match: A0A835YSJ6_9STRA (p28 protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YSJ6_9STRA) HSP 1 Score: 322 bits (824), Expect = 3.230e-107 Identity = 170/254 (66.93%), Postives = 202/254 (79.53%), Query Frame = 1 Query: 40 QFPMDVPPTLVKFDPPIFAGLEPSSEANSNRINNNSGNEPRGGGXXXXXXXXXGNHGKTSQLDDMVNSMLPPREWTEETGTWMQYVSKDPATRLAVITLQEQLDKKLLERQALETGICPVREDLYTQAFDELIRHVTLDGPERGLLCLRVRDEIRMTIDAYKTLYDSSVTFGVKKQLQAEQGMAEMEDQIARLEENKKELELHVSELRNKVEVIEKGESERRAVDDKKRKEEVDFLKYQGQHLDSFLKQIGGSK 801 Q P VP +LV++D PIF G+EP++ N ++S +QL+DM+NSMLPPREWTEETGTWMQ VSK+PATRL V+TLQE LDKKL ERQA +TGICPVR+DLY+QAFDELIR VTLDGPERGLL LRVRDEIRMTIDAY+TLYDSSV FG+KKQLQAEQGM EME +IA+LEE+K+ LE ELRN+VE++EK E+E+R+V+DK+R+EEV+FLKYQGQHLDSFLKQIGGSK Sbjct: 6 QHPNAVPDSLVRYDQPIFGGVEPATGHGGNGTASSS----------------------IAQLEDMMNSMLPPREWTEETGTWMQCVSKNPATRLDVVTLQECLDKKLGERQARDTGICPVRDDLYSQAFDELIRQVTLDGPERGLLLLRVRDEIRMTIDAYRTLYDSSVVFGIKKQLQAEQGMDEMEAEIAQLEESKQALEYRAQELRNRVELMEKREAEQRSVEDKRRREEVEFLKYQGQHLDSFLKQIGGSK 237
BLAST of mRNA_L-elsbetiae_contig8046.17034.1 vs. uniprot
Match: A0A7S2UXS2_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2UXS2_9STRA) HSP 1 Score: 318 bits (814), Expect = 1.780e-105 Identity = 168/254 (66.14%), Postives = 195/254 (76.77%), Query Frame = 1 Query: 40 QFPMDVPPTLVKFDPPIFAGLEPSSEANSNRINNNSGNEPRGGGXXXXXXXXXGNHGKTSQLDDMVNSMLPPREWTEETGTWMQYVSKDPATRLAVITLQEQLDKKLLERQALETGICPVREDLYTQAFDELIRHVTLDGPERGLLCLRVRDEIRMTIDAYKTLYDSSVTFGVKKQLQAEQGMAEMEDQIARLEENKKELELHVSELRNKVEVIEKGESERRAVDDKKRKEEVDFLKYQGQHLDSFLKQIGGSK 801 Q P + P +LVKFD P+F GL+PSS + I N + SQ+DDM+NSM+PPREWT+ +GTWMQY+SK+ ATRL VITLQEQLDK+L+ERQA ET ICPVREDLY+Q FDELIRHVTLD PERGLL LRVRDEIRMTIDAYKTLYDSSVTFG+KKQLQAE GM++ME QIA LE KKE E ELRNK+EVIEK E ERR +++KKRKEE+DFLKYQGQHLD+ +K +GGSK Sbjct: 16 QDPANPPESLVKFDEPLFVGLQPSSHTKAAAIAN-----------------IKADGANASQIDDMMNSMIPPREWTDVSGTWMQYISKESATRLDVITLQEQLDKRLVERQARETDICPVREDLYSQCFDELIRHVTLDSPERGLLLLRVRDEIRMTIDAYKTLYDSSVTFGIKKQLQAEMGMSDMEKQIAILELTKKERENKTLELRNKLEVIEKREVERRGLEEKKRKEEIDFLKYQGQHLDTSIKHVGGSK 252
BLAST of mRNA_L-elsbetiae_contig8046.17034.1 vs. uniprot
Match: A0A7S2CCB2_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2CCB2_9STRA) HSP 1 Score: 313 bits (803), Expect = 5.130e-104 Identity = 168/248 (67.74%), Postives = 191/248 (77.02%), Query Frame = 1 Query: 58 PPTLVKFDPPIFAGLEPSSEANSNRINNNSGNEPRGGGXXXXXXXXXGNHGKTSQLDDMVNSMLPPREWTEETGTWMQYVSKDPATRLAVITLQEQLDKKLLERQALETGICPVREDLYTQAFDELIRHVTLDGPERGLLCLRVRDEIRMTIDAYKTLYDSSVTFGVKKQLQAEQGMAEMEDQIARLEENKKELELHVSELRNKVEVIEKGESERRAVDDKKRKEEVDFLKYQGQHLDSFLKQIGGSK 801 P LVK+DP +F G +P++ N + + P SQLDDMVNSMLPPREWT+E+GTWMQYVSKD ATRL VI LQE LDK+LLERQA ETGICPVREDLY+Q FDELIR VTLDGPERGLL LRVRDEI+MTIDAYK LY+SSVTFGV+KQLQAEQGMAE+E +I LE KKELE V ELRNKVEV EK +ER+ ++DKKRKEE+DFLKYQGQHLDSFL+Q+GG K Sbjct: 12 PDALVKYDPALFVGFDPAT--NDVKATRKADATP-------------------SQLDDMVNSMLPPREWTQESGTWMQYVSKDSATRLDVINLQEMLDKRLLERQARETGICPVREDLYSQCFDELIRQVTLDGPERGLLTLRVRDEIKMTIDAYKILYESSVTFGVRKQLQAEQGMAELESEIEGLEAAKKELENQVLELRNKVEVSEKRGNERKTLEDKKRKEEIDFLKYQGQHLDSFLRQLGGGK 238
BLAST of mRNA_L-elsbetiae_contig8046.17034.1 vs. uniprot
Match: A0A6V1KR45_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V1KR45_HETAK) HSP 1 Score: 295 bits (756), Expect = 1.000e-96 Identity = 160/266 (60.15%), Postives = 195/266 (73.31%), Query Frame = 1 Query: 4 MDAGPDIAQQGMQFPMDVPPTLVKFDPPIFAGLEPSSEANSNRINNNSGNEPRGGGXXXXXXXXXGNHGKTSQLDDMVNSMLPPREWTEETGTWMQYVSKDPATRLAVITLQEQLDKKLLERQALETGICPVREDLYTQAFDELIRHVTLDGPERGLLCLRVRDEIRMTIDAYKTLYDSSVTFGVKKQLQAEQGMAEMEDQIARLEENKKELELHVSELRNKVEVIEKGESERRAVDDKKRKEEVDFLKYQGQHLDSFLKQIGGSK 801 MD G D G Q P + P +L+KFD PIF GL+PS++ ++ P+G +QLDDM+NSMLPPREWTEE+GTWMQY+SK+PATRL VITLQE LDK L+ERQA ETGICPVREDLY+QAFDELIRHVTLD PERGLL LR RDE+RMT+DAYKTLY SSVTFGVKKQLQAE GM+EM +QI L E ++ E +ELR +++ EK +ER+ ++ + R+ E+DFLKYQGQHLD FLK +GG+K Sbjct: 2 MDNGYDD-DNGGQGPANPPESLLKFDEPIFVGLQPSNQNEGFKMPE----APKG-------------ELTNAQLDDMLNSMLPPREWTEESGTWMQYISKEPATRLDVITLQEHLDKCLVERQARETGICPVREDLYSQAFDELIRHVTLDSPERGLLLLRARDEVRMTVDAYKTLYGSSVTFGVKKQLQAELGMSEMANQIEALGEARRARERRCAELRARLDAAEKRAAERQQLEGQARRAEIDFLKYQGQHLDGFLKHVGGTK 249
BLAST of mRNA_L-elsbetiae_contig8046.17034.1 vs. uniprot
Match: F0Y5N0_AURAN (Uncharacterized protein n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0Y5N0_AURAN) HSP 1 Score: 283 bits (724), Expect = 1.010e-92 Identity = 141/187 (75.40%), Postives = 165/187 (88.24%), Query Frame = 1 Query: 232 MVNSMLPPREWTEETGTWMQYVSKDPATRLAVITLQEQLDKKLLERQALETGICPVREDLYTQAFDELIRHVTLDGPERGLLCLRVRDEIRMTIDAYKTLYDSSVTFGVKKQLQAEQGMAEMEDQIARLEENKKELELHVSELRNKVEVIEKGESERRAVDDKKRKEEVDFLKYQGQHLDSFLKQIG 792 MVNSMLPPREWT+ +GTWMQYVSK ATR+ VI+LQE LDK+LL+RQA + GICPVREDLY+Q +DELIR +TLDGPERGLL LRVRDEIRMTIDAYK LYDSSVTFG++KQLQAEQGM+E+E +IA LE K+LE V ELRN VEVIEK E+E +AV+DKKRK+E+DFLKYQGQHLD+FL+Q+G Sbjct: 1 MVNSMLPPREWTQTSGTWMQYVSKKTATRMDVISLQEDLDKRLLDRQARDAGICPVREDLYSQCYDELIRQITLDGPERGLLLLRVRDEIRMTIDAYKVLYDSSVTFGIRKQLQAEQGMSELEGRIAELEAENKDLENQVLELRNGVEVIEKRENEHKAVEDKKRKDEIDFLKYQGQHLDAFLRQLG 187
BLAST of mRNA_L-elsbetiae_contig8046.17034.1 vs. uniprot
Match: A0A8J2S909_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2S909_9STRA) HSP 1 Score: 284 bits (726), Expect = 2.110e-92 Identity = 152/245 (62.04%), Postives = 177/245 (72.24%), Query Frame = 1 Query: 58 PPTLVKFDPPIFAGLEPSSEANSNRINNNSGNEPRGGGXXXXXXXXXGNHGKTSQLDDMVNSMLPPREWTEETGTWMQYVSKDPATRLAVITLQEQLDKKLLERQALETGICPVREDLYTQAFDELIRHVTLDGPERGLLCLRVRDEIRMTIDAYKTLYDSSVTFGVKKQLQAEQGMAEMEDQIARLEENKKELELHVSELRNKVEVIEKGESERRAVDDKKRKEEVDFLKYQGQHLDSFLKQIG 792 P +L+K D P+F G + + A G G QL +MVNSMLPPREWTE TGTWMQYVSK PA+R VI +QE LD KLLERQA + GICPVREDLY Q FDELIR +TLDGPERGLL LRVRDE+RMT+DAYK LYDSSVTFGV+KQLQAEQGMAE++ ++A LE K+LE V ELRN VEV+EK SE +A+ DKKRK+E+DFLKYQGQHLD FL+Q+G Sbjct: 10 PASLLKHDEPLFVGFDGADSAAK------PGTAAGG------------------QLGEMVNSMLPPREWTEPTGTWMQYVSKAPASRTDVIAMQEALDAKLLERQARDAGICPVREDLYAQCFDELIRQLTLDGPERGLLLLRVRDEVRMTVDAYKVLYDSSVTFGVRKQLQAEQGMAELQGRVAELEAENKDLENRVLELRNGVEVVEKRASEHKAMADKKRKDEIDFLKYQGQHLDQFLRQLG 230
BLAST of mRNA_L-elsbetiae_contig8046.17034.1 vs. uniprot
Match: A0A7S1GAQ8_9STRA (Hypothetical protein n=1 Tax=Bicosoecida sp. CB-2014 TaxID=1486930 RepID=A0A7S1GAQ8_9STRA) HSP 1 Score: 270 bits (690), Expect = 8.070e-87 Identity = 138/192 (71.88%), Postives = 163/192 (84.90%), Query Frame = 1 Query: 223 LDDMVNSMLPPREWTEE-TGTWMQYVSKDPATRLAVITLQEQLDKKLLERQALETGICPVREDLYTQAFDELIRHVTLDGPERGLLCLRVRDEIRMTIDAYKTLYDSSVTFGVKKQLQAEQGMAEMEDQIARLEENKKELELHVSELRNKVEVIEKGESERRAVDDKKRKEEVDFLKYQGQHLDSFLKQIGG 795 +++++NS+LPPR W +E WMQYVSK PA+RL VI LQE LD+KL+ERQA E GICPVREDLY+Q FDELIR VT++ PERGLL LRVRDEIRMTIDAYKTLY+SSVTFGV+KQLQAEQG+AEME +I L E KK+L+ V ELRNKVEVIEK +ERR +++KKRKEE+DFLKYQGQHLD FLK +GG Sbjct: 49 IEEVLNSILPPRMWADEGAADWMQYVSKTPASRLDVINLQEALDEKLMERQAREMGICPVREDLYSQCFDELIRQVTINSPERGLLLLRVRDEIRMTIDAYKTLYESSVTFGVRKQLQAEQGLAEMESKIEELSEAKKDLQNQVLELRNKVEVIEKRATERRQLEEKKRKEEIDFLKYQGQHLDQFLKTLGG 240
BLAST of mRNA_L-elsbetiae_contig8046.17034.1 vs. uniprot
Match: A0A6G0XVN6_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0XVN6_9STRA) HSP 1 Score: 267 bits (682), Expect = 9.700e-86 Identity = 140/247 (56.68%), Postives = 179/247 (72.47%), Query Frame = 1 Query: 58 PPTLVKFDPPIFAGLEPSSEANSNRINNNSGNEPRGGGXXXXXXXXXGNHGKTSQLDDMVNSMLPPREWTEETGTWMQYVSKDPATRLAVITLQEQLDKKLLERQALETGICPVREDLYTQAFDELIRHVTLDGPERGLLCLRVRDEIRMTIDAYKTLYDSSVTFGVKKQLQAEQGMAEMEDQIARLEENKKELELHVSELRNKVEVIEKGESERRAVDDKKRKEEVDFLKYQGQHLDSFLKQIGGS 798 P +LVKFD PIF G + + + S +P S+++D++N+MLP + W E+TG WM+YVS +P+TR VI LQEQ+D KL++RQA E+GICPVRED+Y+Q FDELIR VT++ PERGLL LR+RDEIRMT DAYKTLYDSS+TFGV+KQLQAEQGM +ED+I L E K+E E V EL NK+E+IEK +ERRA+ +K+ KEE++FLKYQGQHLD+FLK GGS Sbjct: 7 PESLVKFDAPIFTG---ENHDGGKKTHPTSKIDP------------------VSRIEDVLNAMLPAQSWKEDTGFWMRYVSAEPSTRFDVIKLQEQMDAKLIKRQARESGICPVREDIYSQCFDELIRQVTINSPERGLLLLRIRDEIRMTTDAYKTLYDSSITFGVRKQLQAEQGMGSIEDKILLLTEEKREYENKVLELTNKLEIIEKRSNERRALQEKRYKEEIEFLKYQGQHLDAFLKSAGGS 232
BLAST of mRNA_L-elsbetiae_contig8046.17034.1 vs. uniprot
Match: A0A024UH61_9STRA (Uncharacterized protein n=2 Tax=Aphanomyces TaxID=100860 RepID=A0A024UH61_9STRA) HSP 1 Score: 264 bits (675), Expect = 1.190e-84 Identity = 141/247 (57.09%), Postives = 176/247 (71.26%), Query Frame = 1 Query: 58 PPTLVKFDPPIFAGLEPSSEANSNRINNNSGNEPRGGGXXXXXXXXXGNHGKTSQLDDMVNSMLPPREWTEETGTWMQYVSKDPATRLAVITLQEQLDKKLLERQALETGICPVREDLYTQAFDELIRHVTLDGPERGLLCLRVRDEIRMTIDAYKTLYDSSVTFGVKKQLQAEQGMAEMEDQIARLEENKKELELHVSELRNKVEVIEKGESERRAVDDKKRKEEVDFLKYQGQHLDSFLKQIGGS 798 P +LVK+D PIF G N G + + S+++D++N+MLPP+ W EETG WM+Y S +P+TR VI LQEQ+D KL++RQA E+GIC VRED+Y Q FDELIR VT++ PERGLL LR+RDEIRMT DAYKTLYDSS+TFGV+KQLQAEQGM +ED+IA L E K+E E V EL NK+EVIEK SERRA+ +K+ KEE++FLKYQGQHLD+FLK GG+ Sbjct: 7 PESLVKYDAPIFTGEH-----------NEGGKKAKPAPGTKIDP--------VSRIEDVLNAMLPPQTWKEETGHWMRYTSAEPSTRFDVIKLQEQMDAKLIKRQARESGICNVREDIYAQCFDELIREVTINSPERGLLLLRIRDEIRMTTDAYKTLYDSSITFGVRKQLQAEQGMGSIEDKIALLAEEKREYENKVLELTNKLEVIEKRGSERRALQEKRYKEEIEFLKYQGQHLDAFLKSAGGA 234 The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig8046.17034.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_L-elsbetiae_contig8046.17034.1 >prot_L-elsbetiae_contig8046.17034.1 ID=prot_L-elsbetiae_contig8046.17034.1|Name=mRNA_L-elsbetiae_contig8046.17034.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=267bp MDAGPDIAQQGMQFPMDVPPTLVKFDPPIFAGLEPSSEANSNRINNNSGNback to top mRNA from alignment at L-elsbetiae_contig8046:692..4767- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_L-elsbetiae_contig8046.17034.1 ID=mRNA_L-elsbetiae_contig8046.17034.1|Name=mRNA_L-elsbetiae_contig8046.17034.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=4076bp|location=Sequence derived from alignment at L-elsbetiae_contig8046:692..4767- (Laminarionema elsbetiae ELsaHSoW15)back to top Coding sequence (CDS) from alignment at L-elsbetiae_contig8046:692..4767- >mRNA_L-elsbetiae_contig8046.17034.1 ID=mRNA_L-elsbetiae_contig8046.17034.1|Name=mRNA_L-elsbetiae_contig8046.17034.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1602bp|location=Sequence derived from alignment at L-elsbetiae_contig8046:692..4767- (Laminarionema elsbetiae ELsaHSoW15)back to top |