mRNA_L-elsbetiae_contig8033.17021.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig8033.17021.1
Unique NamemRNA_L-elsbetiae_contig8033.17021.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig8033.17021.1 vs. uniprot
Match: D7FQ21_ECTSI (Peptide-methionine (S)-S-oxide reductase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FQ21_ECTSI)

HSP 1 Score: 421 bits (1081), Expect = 2.040e-141
Identity = 219/269 (81.41%), Postives = 239/269 (88.85%), Query Frame = 1 
Query:   43 MAHNLGVMAALFALFSRAGAFVPLGGISTRSF-TSNAATNTAARPHSTQSVSCRPSSTL---VMATEKKAVFGGGCFWCIEAVFKTLDGVSKVVSGYAGGTMENPTYRDVCSGRSGHAEVVLVEYDPSVVAYEELLEVFWKTHDPTQGNRQGMDMGTEYRSIILCQDSEQLDIAVASKEAKQAKINAEAVLGRVVGAITGKKEGENIVNITTTIDLLQVFWEAEKVHQDYYAKNPLSPYCIMNVGTKLVKLRPDISRINRLAREREQAA 837
            M   L VMAALFAL SR GAFV   G+S  SF T++  T+ A R    Q V+ RP S+    VMATEKKAVFGGGCFWCIEAVFKTLDGVSKVVSGYAGGTMENPTYRDVCSGR+GHAEVVL+EYDP+VV ++ELLEVFWKTHDPTQGNRQGMD+GTEYRSIILC+D EQLD+AVAS+EAKQAKINAEAVLGRVVGA+TGKKEGENIVNITTTIDLLQVFWEAEKVHQDYYA+NPLSPYCIMNVGTKLVKLRPDISRINRL+R+RE A+
Sbjct:    1 MTKTLPVMAALFALLSRTGAFVSSPGLSKSSFATTDRGTSDAVRSRR-QGVAYRPCSSAAATVMATEKKAVFGGGCFWCIEAVFKTLDGVSKVVSGYAGGTMENPTYRDVCSGRTGHAEVVLLEYDPTVVTFDELLEVFWKTHDPTQGNRQGMDIGTEYRSIILCEDEEQLDMAVASREAKQAKINAEAVLGRVVGAVTGKKEGENIVNITTTIDLLQVFWEAEKVHQDYYARNPLSPYCIMNVGTKLVKLRPDISRINRLSRDREVAS 268
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BLAST of mRNA_L-elsbetiae_contig8033.17021.1 vs. uniprot
Match: A0A643JSG6_9EURY (Peptide methionine sulfoxide reductase MsrA n=2 Tax=Haloferax TaxID=2251 RepID=A0A643JSG6_9EURY)

HSP 1 Score: 194 bits (492), Expect = 6.300e-55
Identity = 97/189 (51.32%), Postives = 119/189 (62.96%), Query Frame = 1 
Query:  220 MATEKKAVFGGGCFWCIEAVFKTLDGVSKVVSGYAGGTMENPTYRDVCSGRSGHAEVVLVEYDPSVVAYEELLEVFWKTHDPTQGNRQGMDMGTEYRSIILCQDSEQLDIAVASKEAKQAKINAEAVLGRVVGAITGKKEGENIVNITTTIDLLQVFWEAEKVHQDYYAKNPLSPYCIMNVGTKLVKLR 786
            M   K A FGGGCFWCIEA FK LDG+S V SGYAGG++ENPTY  VCSG +GHAEV+ VEYDP+VV Y+ELLEVF+  HDPTQ NRQG D+GT+YRSI+L  D +Q   A A  EA     + + V                     T ++ L+ F+EAE  HQDY+ KNP   YC  +   K+ K+R
Sbjct:    1 MVASKSATFGGGCFWCIEAAFKELDGISSVTSGYAGGSVENPTYEQVCSGNTGHAEVIQVEYDPAVVGYDELLEVFFAVHDPTQLNRQGPDVGTQYRSIVLYHDDDQQRQAAAYIEALDESYDDDVV---------------------TELEPLETFYEAETYHQDYFEKNPNDAYCRFHASPKIEKVR 168
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BLAST of mRNA_L-elsbetiae_contig8033.17021.1 vs. uniprot
Match: A0A2V5VVI7_9BACT (Peptide methionine sulfoxide reductase MsrA n=4 Tax=Verrucomicrobia bacterium TaxID=2026799 RepID=A0A2V5VVI7_9BACT)

HSP 1 Score: 194 bits (492), Expect = 1.400e-54
Identity = 98/202 (48.51%), Postives = 127/202 (62.87%), Query Frame = 1 
Query:  202 PSSTLVMATEKK--AVFGGGCFWCIEAVFKTLDGVSKVVSGYAGGTMENPTYRDVCSGRSGHAEVVLVEYDPSVVAYEELLEVFWKTHDPTQGNRQGMDMGTEYRSIILCQDSEQLDIAVASKEAKQAKINAEAVLGRVVGAITGKKEGENIVNITTTIDLLQVFWEAEKVHQDYYAKNPLSPYCIMNVGTKLVKLRPDISR 801
            PS   + AT K   A FGGGCFWC+EAVF+ LDGV  V SGYAGGT ENPTY++VC+G +GHAEV+ +E+DP  ++YE+LLEVFW+ HDPT  NRQG D GT+YRS+IL  +  Q   A  SKE  Q +                         I T I  L  F++AE+ HQDY+ KNP +PYC + +  KL KL+P +++
Sbjct:   21 PSDKTMNATNKTELATFGGGCFWCLEAVFERLDGVKSVTSGYAGGTKENPTYKEVCTGATGHAEVIQIEFDPQKISYEKLLEVFWEAHDPTTMNRQGADAGTQYRSVILYHNDAQKQAAEKSKELAQWRFPRP---------------------IVTEIIPLTKFFKAEEYHQDYFRKNPNAPYCAVVISPKLEKLKPKLAK 201
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BLAST of mRNA_L-elsbetiae_contig8033.17021.1 vs. uniprot
Match: A0A7S0CNL4_9EUKA (Peptide-methionine (S)-S-oxide reductase n=1 Tax=Amorphochlora amoebiformis TaxID=1561963 RepID=A0A7S0CNL4_9EUKA)

HSP 1 Score: 195 bits (495), Expect = 3.920e-54
Identity = 102/203 (50.25%), Postives = 135/203 (66.50%), Query Frame = 1 
Query:  232 KKAVFGGGCFWCIEAVFKTLDGVSKVVSGYAGGTMENPTYRDVCSGRSGHAEVVLVEYDPSVVAYEELLEVFWKTHDPTQGNRQGMDMGTEYRSIILCQDSEQLDIAVASKEAKQAKINAEAVLGRVVGAI-TGKKEGENIVNITTTIDLLQVFWEAEKVHQDYYAKNPLSPYCIMNVGTKLVKLRPDISRINRLAREREQAA 837
            ++AVFGGGCFWCIEAVF+ L GV KVVSGYAGGT  NPTY  VCSG+SGHAEVV VE++P  +AY++LL+VFW  HDPT  NRQG+D+G++YRS+I     +Q   A+ S   KQ+K  +     R+ G I TG+K       I T ++ L+ F  AE  HQ+YY K P  PYC +N+  K++K++   ++   L R RE  A
Sbjct:   77 QRAVFGGGCFWCIEAVFRELKGVKKVVSGYAGGTSSNPTYEAVCSGKSGHAEVVAVEFNPKEIAYKDLLDVFWAAHDPTTKNRQGLDIGSQYRSVIFYTSEDQRTSALESIN-KQSKYQSSR---RLFGFIPTGRK-------IVTELEPLKQFHSAESYHQNYYKKMPYVPYCSVNIAPKIIKIK---TKFQHLLRGREDDA 265
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BLAST of mRNA_L-elsbetiae_contig8033.17021.1 vs. uniprot
Match: A0A6A8GB24_9EURY (Peptide methionine sulfoxide reductase MsrA n=2 Tax=Haloferax TaxID=2251 RepID=A0A6A8GB24_9EURY)

HSP 1 Score: 191 bits (484), Expect = 9.130e-54
Identity = 94/189 (49.74%), Postives = 122/189 (64.55%), Query Frame = 1 
Query:  220 MATEKKAVFGGGCFWCIEAVFKTLDGVSKVVSGYAGGTMENPTYRDVCSGRSGHAEVVLVEYDPSVVAYEELLEVFWKTHDPTQGNRQGMDMGTEYRSIILCQDSEQLDIAVASKEAKQAKINAEAVLGRVVGAITGKKEGENIVNITTTIDLLQVFWEAEKVHQDYYAKNPLSPYCIMNVGTKLVKLR 786
            M T + A FGGGCFWCIEA FK LDG++ V SGYAGG++ENPTY+ VCSG +GHAEVV +E+DP VVAY+ELL+VF+  HDPTQ NRQG D+GT+YRS+IL  D +Q  +A A  EA     + + V                     T +  ++ F+EAE+ HQDY+ KNP   YC  +   K+ K+R
Sbjct:    1 MGTTQTATFGGGCFWCIEAAFKELDGITDVTSGYAGGSVENPTYKQVCSGDTGHAEVVQLEFDPDVVAYDELLDVFFAVHDPTQLNRQGPDVGTQYRSVILYHDDDQRQVAEAYIEAVDESYDDDVV---------------------TELTSIETFYEAEEYHQDYFEKNPNDAYCQFHASPKVEKVR 168
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BLAST of mRNA_L-elsbetiae_contig8033.17021.1 vs. uniprot
Match: A0A0W1SKA7_9EURY (Peptide methionine sulfoxide reductase MsrA n=3 Tax=Haloferax TaxID=2251 RepID=A0A0W1SKA7_9EURY)

HSP 1 Score: 190 bits (482), Expect = 1.780e-53
Identity = 96/189 (50.79%), Postives = 119/189 (62.96%), Query Frame = 1 
Query:  220 MATEKKAVFGGGCFWCIEAVFKTLDGVSKVVSGYAGGTMENPTYRDVCSGRSGHAEVVLVEYDPSVVAYEELLEVFWKTHDPTQGNRQGMDMGTEYRSIILCQDSEQLDIAVASKEAKQAKINAEAVLGRVVGAITGKKEGENIVNITTTIDLLQVFWEAEKVHQDYYAKNPLSPYCIMNVGTKLVKLR 786
            M + + A FGGGCFWCIEA FK LDG+S V SGYAGGT+ENPTY  VCSG +GHAEV+ VEYDPSVV Y+ELL+VF+  HDPTQ NRQG D+GT+YRSI+L  D +Q  +A A  EA     + + V                     T +   + F+EAE  HQDY+ KNP   YC  +   K+ K+R
Sbjct:    1 MESSQTATFGGGCFWCIEAAFKELDGISDVTSGYAGGTVENPTYEQVCSGTTGHAEVIQVEYDPSVVDYDELLDVFFAVHDPTQLNRQGPDVGTQYRSIVLYHDDDQRRLAEAYVEALDDSYDDDVV---------------------TELAPFETFYEAEAYHQDYFEKNPNDAYCQFHASPKIEKVR 168
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BLAST of mRNA_L-elsbetiae_contig8033.17021.1 vs. uniprot
Match: A0A650A413_9EURY (Peptide methionine sulfoxide reductase MsrA n=1 Tax=Halorhabdus sp. CBA1104 TaxID=1380432 RepID=A0A650A413_9EURY)

HSP 1 Score: 189 bits (481), Expect = 2.330e-53
Identity = 95/183 (51.91%), Postives = 119/183 (65.03%), Query Frame = 1 
Query:  238 AVFGGGCFWCIEAVFKTLDGVSKVVSGYAGGTMENPTYRDVCSGRSGHAEVVLVEYDPSVVAYEELLEVFWKTHDPTQGNRQGMDMGTEYRSIILCQDSEQLDIAVASKEAKQAKINAEAVLGRVVGAITGKKEGENIVNITTTIDLLQVFWEAEKVHQDYYAKNPLSPYCIMNVGTKLVKLR 786
            A FGGGCFWC EA  K LDG+  V SGYAGG +ENPTYR+VCSG +GHAEVV VEYD +V++Y+ELLEVF+ THDPTQ NRQG D+GT+YRSI+L  D +Q ++A A  EA  A+ + E V                     T +  L  F+ AE+ HQDY+ KNP   YC M+   K+ K+R
Sbjct:    4 ATFGGGCFWCTEAAMKELDGIESVTSGYAGGHVENPTYREVCSGDTGHAEVVQVEYDSAVISYDELLEVFFATHDPTQLNRQGPDVGTQYRSIVLYHDDDQRELAAAYIEALDAEYDEEVV---------------------TELTELDEFYRAEEKHQDYFEKNPTDAYCQMHAAPKVEKVR 165
[Close]
BLAST of mRNA_L-elsbetiae_contig8033.17021.1 vs. uniprot
Match: UPI001FF3DF9A (peptide-methionine (S)-S-oxide reductase MsrA n=2 Tax=Natrialbaceae TaxID=1644061 RepID=UPI001FF3DF9A)

HSP 1 Score: 189 bits (481), Expect = 2.570e-53
Identity = 95/189 (50.26%), Postives = 123/189 (65.08%), Query Frame = 1 
Query:  220 MATEKKAVFGGGCFWCIEAVFKTLDGVSKVVSGYAGGTMENPTYRDVCSGRSGHAEVVLVEYDPSVVAYEELLEVFWKTHDPTQGNRQGMDMGTEYRSIILCQDSEQLDIAVASKEAKQAKINAEAVLGRVVGAITGKKEGENIVNITTTIDLLQVFWEAEKVHQDYYAKNPLSPYCIMNVGTKLVKLR 786
            M++ ++A FGGGCFWC EA  K L+GV+ V SGYAGG  ENPTY+ VCSG +GHAEVV VEYDP V+ Y++LLEVF+ THDPTQ NRQG D+GT+YRSI+L  D EQ  +A +  EA   + + E V                     T ++ L+ F+EAE+ HQDY+ KNP   YC M+   K+ K+R
Sbjct:    1 MSSTQRATFGGGCFWCTEAAMKELEGVTSVTSGYAGGHAENPTYQQVCSGTTGHAEVVQVEYDPDVIGYDDLLEVFFATHDPTQLNRQGPDVGTQYRSIVLYHDDEQRRLAESYIEALDEEYDDEVV---------------------TELEPLEEFYEAEEYHQDYFEKNPNDAYCRMHAAPKVEKVR 168
[Close]
BLAST of mRNA_L-elsbetiae_contig8033.17021.1 vs. uniprot
Match: A0A6B0SUT6_9EURY (Peptide methionine sulfoxide reductase MsrA n=4 Tax=Halobaculum TaxID=43927 RepID=A0A6B0SUT6_9EURY)

HSP 1 Score: 189 bits (479), Expect = 4.840e-53
Identity = 94/183 (51.37%), Postives = 120/183 (65.57%), Query Frame = 1 
Query:  238 AVFGGGCFWCIEAVFKTLDGVSKVVSGYAGGTMENPTYRDVCSGRSGHAEVVLVEYDPSVVAYEELLEVFWKTHDPTQGNRQGMDMGTEYRSIILCQDSEQLDIAVASKEAKQAKINAEAVLGRVVGAITGKKEGENIVNITTTIDLLQVFWEAEKVHQDYYAKNPLSPYCIMNVGTKLVKLR 786
            A FGGGCFWCIEA F+ +DGV  V SGYAGG  E+P+YR+VC+G +GHAEVV V YDPSV+ YEELLEVF+  HDPTQ NRQG D+GT+YRSI+L  D EQ ++A +  EA                     +EG     + T ++ L+ F+ AE+ HQDY+AKNP   YC M+   K+ K+R
Sbjct:    5 ATFGGGCFWCIEAAFEEIDGVDGVTSGYAGGHAEDPSYREVCAGTTGHAEVVQVTYDPSVITYEELLEVFFTVHDPTQLNRQGPDVGTQYRSIVLYHDDEQRELAASYIEALD-------------------EEGGYDDEVVTELEPLETFYRAEEKHQDYFAKNPNDAYCSMHAQPKIDKVR 168
[Close]
BLAST of mRNA_L-elsbetiae_contig8033.17021.1 vs. uniprot
Match: G2MGR9_9EURY (Peptide methionine sulfoxide reductase MsrA n=1 Tax=halophilic archaeon DL31 TaxID=756883 RepID=G2MGR9_9EURY)

HSP 1 Score: 189 bits (479), Expect = 4.840e-53
Identity = 93/184 (50.54%), Postives = 120/184 (65.22%), Query Frame = 1 
Query:  235 KAVFGGGCFWCIEAVFKTLDGVSKVVSGYAGGTMENPTYRDVCSGRSGHAEVVLVEYDPSVVAYEELLEVFWKTHDPTQGNRQGMDMGTEYRSIILCQDSEQLDIAVASKEAKQAKINAEAVLGRVVGAITGKKEGENIVNITTTIDLLQVFWEAEKVHQDYYAKNPLSPYCIMNVGTKLVKLR 786
            KA FGGGCFWCIEA  + LDGV  V SGYAGG  ENPTYR VCSG++GHAEVV +EY+P  ++YEELLEVF+  HDPTQ NRQG D+G++YRSI+L  D EQL++A +  EA                     + G    ++ T I+ L+ F+ AE+ HQDY+ KNP   YC M+   K+ K++
Sbjct:    4 KATFGGGCFWCIEAALEPLDGVESVTSGYAGGDTENPTYRAVCSGKTGHAEVVQLEYEPETISYEELLEVFFTIHDPTQLNRQGPDVGSQYRSIVLAHDDEQLELAQSFVEALA-------------------ESGGYDDDVVTEIERLETFYRAEEPHQDYFKKNPNDAYCSMHAQPKIEKVK 168
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig8033.17021.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FQ21_ECTSI2.040e-14181.41Peptide-methionine (S)-S-oxide reductase n=1 Tax=E... [more]
A0A643JSG6_9EURY6.300e-5551.32Peptide methionine sulfoxide reductase MsrA n=2 Ta... [more]
A0A2V5VVI7_9BACT1.400e-5448.51Peptide methionine sulfoxide reductase MsrA n=4 Ta... [more]
A0A7S0CNL4_9EUKA3.920e-5450.25Peptide-methionine (S)-S-oxide reductase n=1 Tax=A... [more]
A0A6A8GB24_9EURY9.130e-5449.74Peptide methionine sulfoxide reductase MsrA n=2 Ta... [more]
A0A0W1SKA7_9EURY1.780e-5350.79Peptide methionine sulfoxide reductase MsrA n=3 Ta... [more]
A0A650A413_9EURY2.330e-5351.91Peptide methionine sulfoxide reductase MsrA n=1 Ta... [more]
UPI001FF3DF9A2.570e-5350.26peptide-methionine (S)-S-oxide reductase MsrA n=2 ... [more]
A0A6B0SUT6_9EURY4.840e-5351.37Peptide methionine sulfoxide reductase MsrA n=4 Ta... [more]
G2MGR9_9EURY4.840e-5350.54Peptide methionine sulfoxide reductase MsrA n=1 Ta... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig8033contigL-elsbetiae_contig8033:642..4917 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeArchaea
Seed ortholog score190.3
Seed ortholog evalue1.2e-45
Seed eggNOG ortholog797303.Natpe_1237
Preferred namemsrA
KEGG koko:K07304
Hectar predicted targeting categorychloroplast
EggNOG free text desc.Has an important function as a repair enzyme for proteins that have been inactivated by oxidation. Catalyzes the reversible oxidation-reduction of methionine sulfoxide in proteins to methionine
EggNOG OGs23V5S@183963,2XWKA@28890,COG0225@1,arCOG02816@2157
EC1.8.4.11
COG Functional cat.O
Best tax levelHalobacteria
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000
Ec32 ortholog descriptionmethionine sulfoxide reductase
Ec32 orthologEc-01_007800.1
Exons6
Model size1872
Cds size798
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig8033.17021.1prot_L-elsbetiae_contig8033.17021.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig8033 684..3885 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816888.5120332-UTR-L-elsbetiae_contig8033:641..6831622816888.5120332-UTR-L-elsbetiae_contig8033:641..683Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig8033 642..683 +
1691683888.9136553-UTR-L-elsbetiae_contig8033:641..6831691683888.9136553-UTR-L-elsbetiae_contig8033:641..683Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig8033 642..683 +
1622816888.58198-UTR-L-elsbetiae_contig8033:3885..49171622816888.58198-UTR-L-elsbetiae_contig8033:3885..4917Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig8033 3886..4917 +
1691683888.9893534-UTR-L-elsbetiae_contig8033:3885..49171691683888.9893534-UTR-L-elsbetiae_contig8033:3885..4917Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig8033 3886..4917 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816888.5226133-CDS-L-elsbetiae_contig8033:683..9041622816888.5226133-CDS-L-elsbetiae_contig8033:683..904Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig8033 684..904 +
1691683888.9273016-CDS-L-elsbetiae_contig8033:683..9041691683888.9273016-CDS-L-elsbetiae_contig8033:683..904Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig8033 684..904 +
1622816888.5325162-CDS-L-elsbetiae_contig8033:1892..19831622816888.5325162-CDS-L-elsbetiae_contig8033:1892..1983Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig8033 1893..1983 +
1691683888.9365604-CDS-L-elsbetiae_contig8033:1892..19831691683888.9365604-CDS-L-elsbetiae_contig8033:1892..1983Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig8033 1893..1983 +
1622816888.542473-CDS-L-elsbetiae_contig8033:2276..23931622816888.542473-CDS-L-elsbetiae_contig8033:2276..2393Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig8033 2277..2393 +
1691683888.9480278-CDS-L-elsbetiae_contig8033:2276..23931691683888.9480278-CDS-L-elsbetiae_contig8033:2276..2393Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig8033 2277..2393 +
1622816888.5522761-CDS-L-elsbetiae_contig8033:2631..27361622816888.5522761-CDS-L-elsbetiae_contig8033:2631..2736Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig8033 2632..2736 +
1691683888.9599705-CDS-L-elsbetiae_contig8033:2631..27361691683888.9599705-CDS-L-elsbetiae_contig8033:2631..2736Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig8033 2632..2736 +
1622816888.5621412-CDS-L-elsbetiae_contig8033:3339..34681622816888.5621412-CDS-L-elsbetiae_contig8033:3339..3468Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig8033 3340..3468 +
1691683888.9698532-CDS-L-elsbetiae_contig8033:3339..34681691683888.9698532-CDS-L-elsbetiae_contig8033:3339..3468Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig8033 3340..3468 +
1622816888.5720425-CDS-L-elsbetiae_contig8033:3750..38851622816888.5720425-CDS-L-elsbetiae_contig8033:3750..3885Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig8033 3751..3885 +
1691683888.9793503-CDS-L-elsbetiae_contig8033:3750..38851691683888.9793503-CDS-L-elsbetiae_contig8033:3750..3885Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig8033 3751..3885 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig8033.17021.1

>prot_L-elsbetiae_contig8033.17021.1 ID=prot_L-elsbetiae_contig8033.17021.1|Name=mRNA_L-elsbetiae_contig8033.17021.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=266bp
MAHNLGVMAALFALFSRAGAFVPLGGISTRSFTSNAATNTAARPHSTQSV
SCRPSSTLVMATEKKAVFGGGCFWCIEAVFKTLDGVSKVVSGYAGGTMEN
PTYRDVCSGRSGHAEVVLVEYDPSVVAYEELLEVFWKTHDPTQGNRQGMD
MGTEYRSIILCQDSEQLDIAVASKEAKQAKINAEAVLGRVVGAITGKKEG
ENIVNITTTIDLLQVFWEAEKVHQDYYAKNPLSPYCIMNVGTKLVKLRPD
ISRINRLAREREQAA*
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mRNA from alignment at L-elsbetiae_contig8033:642..4917+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig8033.17021.1 ID=mRNA_L-elsbetiae_contig8033.17021.1|Name=mRNA_L-elsbetiae_contig8033.17021.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=4276bp|location=Sequence derived from alignment at L-elsbetiae_contig8033:642..4917+ (Laminarionema elsbetiae ELsaHSoW15)
GCACGATTTATTTTCTCATCCTCATCCTTCCCTGTCTCGACGATGGCACA
TAATCTAGGCGTAATGGCCGCCCTCTTTGCTCTATTTTCTCGTGCCGGGG
CCTTCGTCCCGCTGGGAGGAATAAGCACGAGAAGCTTCACCAGCAACGCC
GCGACAAATACTGCGGCAAGACCACACTCAACACAGAGTGTCTCCTGCAG
GCCCAGCAGCACTCTTGTCATGGCTACCGAGAAGAAGGCCGTCTTTGGTG
GGGGGTGCTTTTGGTGGGTTAGTGCTTTGTCCTCCTGTATGTAGTGGAAA
TTGGGGTGAGAGTGAAATGTGGAATCATTTGCCTGACACAGCCCGTGGGT
GGGGGTTGCTCATGTTTTCCTCAATGGATCGCTCTGCTGACGTGTGATGA
GGGTGACGGGAGCATGGTGCTTGTTGCAGCAAACCACGTTGGTGCCAATG
CTAGCCCCCAGACCGCGGCGGAAGTCGTGGAATATTCACATGCTGTGGGT
GTTGTGTACCGCGCATGCATCTGCGGTATGTAGTGGTTTGAAAATATTTG
TACCTATTCAGACTAGGTAGATACGCATGTCACGGCCACAGCAGGCCTCC
GCCAGCAAACCTACCGTTTCGTTCACTTGAGCGCATCCACAGCAAGGCCC
ATTTACATGCCATACACATAGAGGTTTAGAAAGCTGTTGGGATCGTATTC
TAATATTCCATGCGCGTTGTTCGAACCATGAGTTGCTCGCCCATGGCAAA
AAAGAGACTGCTGTTATATCTATACATATTAGAGCTCTGGTTTCGAATCT
CGCGCGCGCCTTTGCCTGTCGTTGCTGTGTGTGTCTCCAAGATGAAAACA
TGAAAACCATAACGACTTCCTGTGTATGAGCCCTTGAAGGAAGCAATAAC
CCAACCAACATGAGGCGACCTTCGTGGTTCCTGCCACGATACAATACTGT
TCAGGTGGTTGTAACAACCGCAAAGTCGGCGATGTACAGTAAGCATTGAC
CGACACAAAAGCACAGCGTATATCTATGTATCGAACATTCGGCTACTTCG
TATGTATGTATGTAGTCCTATGTATGTTACCACCGCGCAGACCCAAGCAC
GAGTTCTCTCATTTCATGTGCGATCGTCTGCCCTTGCGTCGTTCGTCGAT
GCATGCGCTAGCTCGCAACTACAATACCAACAACAATCTACCACTTCGCT
TTGGAGGCTCTCCAATCAATCCGAATCCCGCCCAAAACACAACTAAAACA
GGTGCATCGAAGCTGTGTTCAAGACACTTGACGGAGTCTCGAAAGTGGTG
TCGGGCTACGCGGGCGGGACCATGGAAAATCCCACCTATCGGGTACGTGC
AGCTCATCCATCCAGTATCCACTCGTTGAAGTTGCCACCAACCCCCGACA
AATGTTGTGCCGTAGGGTCTGACTCGCTAACGGCTTCCTCTGCACACGAT
TGCGATTACTCCATAGTATATAGAACGGGGGAGGAAGGAGAGAGTGATGT
GCCGGCGCCAGAGCAGTCTTGCCCAAATCCGTTGTAACCAGGGACTCACG
GCCGATATGGATGTCTTGGCAGAGTGTTTATACGGCCGTTCATTGCGCGT
TGTACATGCGTGCGTCCTTGCAACGCCCCCGCTAGGACGTGTGCTCAGGA
CGGTCAGGGCACGCGGAGGTGGTGCTGGTGGAGTACGACCCCTCGGTTGT
GGCCTACGAGGAACTGCTTGAGGTGTTTTGGAAGACGCACGACCCGACAC
AGGTGAAAGGGATAGCGCCACGCCGCAAGCTCGTTCAAGTTCGCTGCTTA
AACCTAGCCGCCCAGTGAACATATGCCGTTCTATTTTTATTTCGTCTTGC
CCCGTTTTGTAATGTACAGATATTTTTGTTGTTAGAAAGGCTCGGGCGAC
CAACTCAGCTTTGCTTAGGAATGTCCAACCAAGAGCGCCTTGTACGGGGT
GTATAACGTTTCGCGTAACGCGTCGCTGCCGTTTTTGCAGGGCAACCGAC
AGGGCATGGACATGGGCACCGAGTACCGAAGTATAATCCTATGCCAGGAC
AGCGAGCAGCTGGATATCGCTGTGGCATCGAAGGAAGCGAAACAGGTGAT
TTGAACCGCAGGCCGCCACAAGCCAAGAAGTTTCACTTGGGCAGGCCGGA
GTATGCAGGGAGGCGGACGCACAAGAAGAAACACACACACACACACACAC
ACACACACACACACACAGGTAGTAAGTTCGTGTGAGTATCGTTCTCCCTT
TGCGGCTGCCGCGTGTAGCGGCTGCTGCGTGTAGCGGCTGCTGCGTGTAG
TGGCTGCTGCGTGTATCGACTCCAAGGCCTGCATTTTGCCGGCCGCAGAC
GTGAGGGTGTATACCCAGAAGGCAAAGGTGCCCCTGCGAACTCCGCTGGT
TTCCAGTTTTGGGGCCGTCGAATTGAGGTGTTGGAATTCCGGCGAAATCG
GCCGCGTCCGGTAGCCTGATTCTCCGTGCACCGCGTTTCTCTGAACATGA
CAACGCCACGCGTGGCATTCGACTAACTGGTTAGCGTGGCTGCTTTGAGC
GGGTAGTCGCTGAGCTGTCGTTTCTCTGCGGTTGCTGAAGAATCGAGCTG
TTAAAATACCGTCTTATTTGGGTTGCAGTCCCTGCTGTCAACGTGTGCTG
CGGCTCCGGTTGTTCTGATACGTATCCATTATGCTTCATTCCCGGCAGGC
CAAGATAAACGCGGAGGCGGTTTTGGGTAGAGTTGTAGGCGCCATCACGG
GCAAGAAGGAAGGGGAGAACATCGTTAACATCACAACGACGATCGACCTG
CTGCAAGTCTTCTGGGAGGCAGAAAAGGCAAGTAGGATCAAGTAAAATGG
ACGCTTGCTCCGCTTTTGGACGAACGAAGAATCAACTTGGCGTGGTATCG
GCGCAACCAACCCTTGGTCGCGAAGATAGGTGTATAGCTTATGGTGTTAG
GAACCCAATGAGCCACCCTCTTCTTGACACGCGGCAGAAGCCCTGCTTGT
GTGTGGTCAGTTGGTGTGGATGCTTCGAAAAAATCGTGCTGTAAATACGC
GTGTCTCTCGCGTCGAGAGAACCCCTCCCTTTGTCCCTTTCCCCCTTTCT
GCGGTTCAGGTGCACCAAGACTACTACGCCAAGAACCCCCTGTCGCCCTA
CTGCATCATGAACGTCGGGACGAAGCTTGTCAAACTCAGGCCGGACATCA
GCAGGATTAATCGCTTGGCACGAGAGCGCGAGCAGGCCGCGTGATTTTTG
TCGGTCTTGTAGGCGGTGGGGTGAAAAGGGGGACGGGGGCCGGCTATTTC
GGCCTTATACAATACGAAGGTTTATAAACAAGGTAGGTACTAGTTAAGCA
GTTTTAATCTGTGTGTTGAGCCCCTGCCTTATATGAGACCAAGAGGCGTT
TGGTTGTTTTCTCGGGCGACATGCGGGAGGTGCATGTTGCGCTCTGGGGT
CGGCTGACGGCTGCTCGTTGTGTGCTGTGATCTCTTATGTAAGTACATAG
ATTACATACAATATGTACTTCGTAGGAGGTTGGTAGGTTTGTTGTTCCTC
TCGGCGATCGATAGAACATCCTGCTTGTACCCTGCTGTTCGAGAGTAAAC
ACGGGACAAGAAACAGGGCTTGCTTGCGTTTTTATGTAAAAACGCGCCTG
TTGTTGCAGCTCTGTCTTCCCGCGCCGTCCTTTCCACCGCGGTGATTTTC
GGACAGCAGGAGGAGCAGCTAAATTAGCTCTTGAAAACCGCGGTTTCGTT
TCGGAGACGGAGAGAAAGAGGCGGAAAACTTGTTGCCCCCGACTAAACAG
AGGCATGTTGCCAGATATTCATCAGCTCAACATGTGGAACAATTACGAGC
GCGTTCGCCCCCGGAAACGATGGTGTGGCAGCAAGCGCTTCTGCGAATTG
CGTTTTGTTCACGTGCGAACGAGCCCAGTGAGCCCGCGGCATCGCGCGCC
ACCCGCTGTATGGGTTCACGCTTCAATCATCGCATGACTCGAGAGCCCCA
CCGTGCCTTGATCGCTGAATGCTTCACGTCGCCGCTGTGTTCAAAGAAAA
CAAAATTACACACCTGCCATGTTGCCGAAAACAACGCACGAGGTATCCTA
GGTGCCTCCGATACATTCGACCACCACGCGAAGCGCGTTTGCCCCGTGCG
ACAACTCCCTCGTGTAGCTCGAATAAGTATCCATCTCAAAAAATTTGGTG
CCAAAACCGCGGTAATAAGGAAATAAACGCTCTCTGTACGACTGATGACC
AACGAGCGGTAAGAGGCGGTCCAAAG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig8033:642..4917+

>mRNA_L-elsbetiae_contig8033.17021.1 ID=mRNA_L-elsbetiae_contig8033.17021.1|Name=mRNA_L-elsbetiae_contig8033.17021.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1596bp|location=Sequence derived from alignment at L-elsbetiae_contig8033:642..4917+ (Laminarionema elsbetiae ELsaHSoW15)
ATGGCACATAATCTAGGCGTAATGGCCGCCCTCTTTGCTCTATTTTCTCG
TGCCGGGGCCTTCGTCCCGCTGGGAGGAATAAGCACGAGAAGCTTCACCA
GCAACGCCGCGACAAATACTGCGGCAAGACCACACTCAACACAGAGTGTC
TCCTGCAGGCCCAGCAGCACTCTTGTCATGGCTACCGAGAAGAAGGCCGT
CTTTGGTGGGGGGTGCTTTTGATGGCACATAATCTAGGCGTAATGGCCGC
CCTCTTTGCTCTATTTTCTCGTGCCGGGGCCTTCGTCCCGCTGGGAGGAA
TAAGCACGAGAAGCTTCACCAGCAACGCCGCGACAAATACTGCGGCAAGA
CCACACTCAACACAGAGTGTCTCCTGCAGGCCCAGCAGCACTCTTGTCAT
GGCTACCGAGAAGAAGGCCGTCTTTGGTGGGGGGTGCTTTTGGTGCATCG
AAGCTGTGTTCAAGACACTTGACGGAGTCTCGAAAGTGGTGTCGGGCTAC
GCGGGCGGGACCATGGAAAATCCCACCTATCGGGTGCATCGAAGCTGTGT
TCAAGACACTTGACGGAGTCTCGAAAGTGGTGTCGGGCTACGCGGGCGGG
ACCATGGAAAATCCCACCTATCGGGACGTGTGCTCAGGACGGTCAGGGCA
CGCGGAGGTGGTGCTGGTGGAGTACGACCCCTCGGTTGTGGCCTACGAGG
AACTGCTTGAGGTGTTTTGGAAGACGCACGACCCGACACAGGACGTGTGC
TCAGGACGGTCAGGGCACGCGGAGGTGGTGCTGGTGGAGTACGACCCCTC
GGTTGTGGCCTACGAGGAACTGCTTGAGGTGTTTTGGAAGACGCACGACC
CGACACAGGGCAACCGACAGGGCATGGACATGGGCACCGAGTACCGAAGT
ATAATCCTATGCCAGGACAGCGAGCAGCTGGATATCGCTGTGGCATCGAA
GGAAGCGAAACAGGGCAACCGACAGGGCATGGACATGGGCACCGAGTACC
GAAGTATAATCCTATGCCAGGACAGCGAGCAGCTGGATATCGCTGTGGCA
TCGAAGGAAGCGAAACAGGCCAAGATAAACGCGGAGGCGGTTTTGGGTAG
AGTTGTAGGCGCCATCACGGGCAAGAAGGAAGGGGAGAACATCGTTAACA
TCACAACGACGATCGACCTGCTGCAAGTCTTCTGGGAGGCAGAAAAGGCC
AAGATAAACGCGGAGGCGGTTTTGGGTAGAGTTGTAGGCGCCATCACGGG
CAAGAAGGAAGGGGAGAACATCGTTAACATCACAACGACGATCGACCTGC
TGCAAGTCTTCTGGGAGGCAGAAAAGGTGCACCAAGACTACTACGCCAAG
AACCCCCTGTCGCCCTACTGCATCATGAACGTCGGGACGAAGCTTGTCAA
ACTCAGGCCGGACATCAGCAGGATTAATCGCTTGGCACGAGAGCGCGAGC
AGGCCGCGTGAGTGCACCAAGACTACTACGCCAAGAACCCCCTGTCGCCC
TACTGCATCATGAACGTCGGGACGAAGCTTGTCAAACTCAGGCCGGACAT
CAGCAGGATTAATCGCTTGGCACGAGAGCGCGAGCAGGCCGCGTGA
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