mRNA_L-elsbetiae_contig8028.17015.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig8028.17015.1
Unique NamemRNA_L-elsbetiae_contig8028.17015.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig8028.17015.1 vs. uniprot
Match: A0A6H5K5N4_9PHAE (Divinyl chlorophyllide a 8-vinyl-reductase, chloroplastic n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5K5N4_9PHAE)

HSP 1 Score: 122 bits (305), Expect = 1.530e-31
Identity = 61/68 (89.71%), Postives = 66/68 (97.06%), Query Frame = 1 
Query:   16 KSAKDTTVAVAGSTGYIGKFVAMECVRRGYKTIALTRNPDAVVEGAEMVVADVTDPASIDAALAGRKV 219
            K+AKD TVAVAGSTGYIGKFVA+ECVRRGYKTIALTRNPDAVVEGAEMV+ DVTDPAS+DAALAGRK+
Sbjct:   53 KAAKDMTVAVAGSTGYIGKFVALECVRRGYKTIALTRNPDAVVEGAEMVLTDVTDPASVDAALAGRKI 120
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BLAST of mRNA_L-elsbetiae_contig8028.17015.1 vs. uniprot
Match: A0A835ZBC9_9STRA (Divinyl chlorophyllide a 8-vinyl-reductase, chloroplastic n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZBC9_9STRA)

HSP 1 Score: 84.0 bits (206), Expect = 1.340e-17
Identity = 40/52 (76.92%), Postives = 45/52 (86.54%), Query Frame = 1 
Query:   28 DTTVAVAGSTGYIGKFVAMECVRRGYKTIALTRNPDAVVEGAEMVVADVTDP 183
            DTTV VAG+TGYIGKFV  ECVR+GYKT+A+TRNPDA  EGA  VVADVT+P
Sbjct:   11 DTTVLVAGATGYIGKFVVQECVRQGYKTLAVTRNPDAKFEGATTVVADVTNP 62
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BLAST of mRNA_L-elsbetiae_contig8028.17015.1 vs. uniprot
Match: A0A7S3Y013_HETAK (Divinyl chlorophyllide a 8-vinyl-reductase, chloroplastic n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3Y013_HETAK)

HSP 1 Score: 65.9 bits (159), Expect = 6.730e-11
Identity = 38/70 (54.29%), Postives = 47/70 (67.14%), Query Frame = 1 
Query:   25 KDTTVAVAGSTGYIGKFVAMECVRRGYK-TIALTRNP----DAVVEGAEMVVADVTDPASIDAALAGRKV 219
            KD+TV V G+TGYIGKFV  ECVRRG+K  IA+TR+     +    GA + VADVT+P SI  A  G +V
Sbjct:   64 KDSTVLVVGATGYIGKFVVQECVRRGFKKVIAVTRSEPQGKEEYFNGANIKVADVTNPESIKTAFEGEQV 133
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BLAST of mRNA_L-elsbetiae_contig8028.17015.1 vs. uniprot
Match: UPI0018183525 (NAD(P)H-binding protein n=1 Tax=Hamadaea sp. TaxID=2024425 RepID=UPI0018183525)

HSP 1 Score: 60.8 bits (146), Expect = 2.840e-9
Identity = 29/58 (50.00%), Postives = 41/58 (70.69%), Query Frame = 1 
Query:   37 VAVAGSTGYIGKFVAMECVRRGYKTIALTRNPDAVVEGAEMVVADVTDPASIDAALAG 210
            + +AGSTG +G+ +  + V +G+   ALTRNP+A + GAEMVV D+TDP S+  AL G
Sbjct:    3 ILIAGSTGTVGRQIVAQLVEQGHSVRALTRNPEAALPGAEMVVGDLTDPGSLADALDG 60
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BLAST of mRNA_L-elsbetiae_contig8028.17015.1 vs. uniprot
Match: A0A7S4D9Q0_HETAK (Divinyl chlorophyllide a 8-vinyl-reductase, chloroplastic n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S4D9Q0_HETAK)

HSP 1 Score: 60.1 bits (144), Expect = 7.680e-9
Identity = 36/66 (54.55%), Postives = 47/66 (71.21%), Query Frame = 1 
Query:   25 KDTTVAVAGSTGYIGKFVAMECVRRGYK-TIALTRNP-----DA-VVEGAEMVVADVTDPASIDAA 201
            KD++V V G+TGYIGKFV  ECVRRG+K  IA+TR+      DA   +GA++ +ADVT+P SI  A
Sbjct:   68 KDSSVLVVGATGYIGKFVVQECVRRGFKKVIAVTRSDPLGGKDAKFFDGADIKLADVTNPESIKTA 133
[Close]
BLAST of mRNA_L-elsbetiae_contig8028.17015.1 vs. uniprot
Match: W7TM20_9STRA (NAD(P)-binding domain protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7TM20_9STRA)

HSP 1 Score: 59.7 bits (143), Expect = 1.040e-8
Identity = 35/73 (47.95%), Postives = 43/73 (58.90%), Query Frame = 1 
Query:    7 VAGKSAKDTTVAVAGSTGYIGKFVAMECVRRGYKTIALTRNPDA-------VVEGAEMVVADVTDPASIDAAL 204
            VAGK     TVAVAG+TGYIGK V  ECVRRGYKT A  R            ++GAE++   + D A ++A L
Sbjct:   62 VAGKPPSQLTVAVAGATGYIGKAVVRECVRRGYKTKAYVREESIERAKSLDYLKGAEVIGGSLDDSAEVEAKL 134
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BLAST of mRNA_L-elsbetiae_contig8028.17015.1 vs. uniprot
Match: A0A2E9D2T6_9GAMM (Divinyl chlorophyllide a 8-vinyl-reductase, chloroplastic n=1 Tax=Chromatiales bacterium TaxID=2026725 RepID=A0A2E9D2T6_9GAMM)

HSP 1 Score: 58.9 bits (141), Expect = 1.690e-8
Identity = 31/55 (56.36%), Postives = 41/55 (74.55%), Query Frame = 1 
Query:   34 TVAVAGSTGYIGKFVAMECVRRGYKTIALTRNP--DAVVEGAEMVVADVTDPASI 192
            TV + G+TGYIG  V  E VR+G+  IA+TR+   D+  +GAE+V+ADVTDPASI
Sbjct:   10 TVLIVGATGYIGSAVVAESVRQGHDVIAVTRSQQNDSQFDGAEVVLADVTDPASI 64
[Close]
BLAST of mRNA_L-elsbetiae_contig8028.17015.1 vs. uniprot
Match: A0A8J8H155_9ACTN (NAD(P)H-binding protein n=1 Tax=Hamadaea sp. TaxID=2024425 RepID=A0A8J8H155_9ACTN)

HSP 1 Score: 57.8 bits (138), Expect = 3.810e-8
Identity = 27/58 (46.55%), Postives = 42/58 (72.41%), Query Frame = 1 
Query:   37 VAVAGSTGYIGKFVAMECVRRGYKTIALTRNPDAVVEGAEMVVADVTDPASIDAALAG 210
            + +AGSTG +G+ +  + V +G+   ALTRNP+AV+ GAEMVV ++TDP+++  A  G
Sbjct:    3 ILIAGSTGTVGRQIVAQLVAQGHSVRALTRNPEAVLPGAEMVVGNLTDPSTLADAFDG 60
[Close]
BLAST of mRNA_L-elsbetiae_contig8028.17015.1 vs. uniprot
Match: A0A6P5GLS9_ANACO (Divinyl chlorophyllide a 8-vinyl-reductase, chloroplastic n=3 Tax=Bromeliaceae TaxID=4613 RepID=A0A6P5GLS9_ANACO)

HSP 1 Score: 57.8 bits (138), Expect = 5.010e-8
Identity = 34/82 (41.46%), Postives = 51/82 (62.20%), Query Frame = 1 
Query:   16 KSAKDTTVAVAGSTGYIGKFVAMECVRRGYKTIALTRN---------PD---AVVEGAEMVVADVTDPASIDAALA--GRKV 219
            K+  D TV V G+TGYIG+FV  E +RRG+  +A+ R          PD   +++ GA +V +DV DPA++D +L+  GR+V
Sbjct:   73 KNPSDVTVLVTGATGYIGRFVVRELLRRGFAVVAVARERSGIRGRDGPDRTLSLLSGASVVFSDVADPAALDRSLSALGRRV 154
[Close]
BLAST of mRNA_L-elsbetiae_contig8028.17015.1 vs. uniprot
Match: A0A6V7PRM7_ANACO (Divinyl chlorophyllide a 8-vinyl-reductase, chloroplastic n=1 Tax=Ananas comosus var. bracteatus TaxID=296719 RepID=A0A6V7PRM7_ANACO)

HSP 1 Score: 57.8 bits (138), Expect = 5.070e-8
Identity = 34/82 (41.46%), Postives = 51/82 (62.20%), Query Frame = 1 
Query:   16 KSAKDTTVAVAGSTGYIGKFVAMECVRRGYKTIALTRN---------PD---AVVEGAEMVVADVTDPASIDAALA--GRKV 219
            K+  D TV V G+TGYIG+FV  E +RRG+  +A+ R          PD   +++ GA +V +DV DPA++D +L+  GR+V
Sbjct:  119 KNPSDVTVLVTGATGYIGRFVVRELLRRGFAVVAVARERSGIRGRDGPDRTLSLLSGASVVFSDVADPAALDRSLSALGRRV 200
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig8028.17015.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5K5N4_9PHAE1.530e-3189.71Divinyl chlorophyllide a 8-vinyl-reductase, chloro... [more]
A0A835ZBC9_9STRA1.340e-1776.92Divinyl chlorophyllide a 8-vinyl-reductase, chloro... [more]
A0A7S3Y013_HETAK6.730e-1154.29Divinyl chlorophyllide a 8-vinyl-reductase, chloro... [more]
UPI00181835252.840e-950.00NAD(P)H-binding protein n=1 Tax=Hamadaea sp. TaxID... [more]
A0A7S4D9Q0_HETAK7.680e-954.55Divinyl chlorophyllide a 8-vinyl-reductase, chloro... [more]
W7TM20_9STRA1.040e-847.95NAD(P)-binding domain protein n=2 Tax=Monodopsidac... [more]
A0A2E9D2T6_9GAMM1.690e-856.36Divinyl chlorophyllide a 8-vinyl-reductase, chloro... [more]
A0A8J8H155_9ACTN3.810e-846.55NAD(P)H-binding protein n=1 Tax=Hamadaea sp. TaxID... [more]
A0A6P5GLS9_ANACO5.010e-841.46Divinyl chlorophyllide a 8-vinyl-reductase, chloro... [more]
A0A6V7PRM7_ANACO5.070e-841.46Divinyl chlorophyllide a 8-vinyl-reductase, chloro... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig8028contigL-elsbetiae_contig8028:8817..9035 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score124.8
Seed ortholog evalue1.7e-26
Seed eggNOG ortholog2880.D7FPA5
Preferred nameDVR
KEGG rclassRC01376
KEGG koko:K19073
KEGG ReactionR06272,R06896
KEGG Pathwayko00860,ko01100,ko01110,map00860,map01100,map01110
Hectar predicted targeting categoryother localisation
GOsGO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006725,GO:0006778,GO:0006779,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009507,GO:0009526,GO:0009534,GO:0009536,GO:0009579,GO:0009941,GO:0009987,GO:0015994,GO:0015995,GO:0016020,GO:0016491,GO:0018130,GO:0019438,GO:0031967,GO:0031975,GO:0031976,GO:0031984,GO:0033013,GO:0033014,GO:0034641,GO:0042440,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044237,GO:0044249,GO:0044271,GO:0044422,GO:0044424,GO:0044434,GO:0044435,GO:0044444,GO:0044446,GO:0044464,GO:0046148,GO:0046483,GO:0051186,GO:0051188,GO:0051744,GO:0055114,GO:0071704,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576
EggNOG free text desc.divinyl chlorophyllide a 8-vinyl-reductase activity
EggNOG OGsCOG0702@1,KOG1203@2759
EC1.3.1.75
COG Functional cat.GM
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000
Ec32 ortholog description3,8-divinyl protochlorophyllide a 8-vinyl reductase, putative chloroplast precursor
Ec32 orthologEc-15_004140.1
Exons1
Model size219
Cds size219
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816887.9724512-CDS-L-elsbetiae_contig8028:8816..90351622816887.9724512-CDS-L-elsbetiae_contig8028:8816..9035Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig8028 8817..9035 +
1691683888.5356405-CDS-L-elsbetiae_contig8028:8816..90351691683888.5356405-CDS-L-elsbetiae_contig8028:8816..9035Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig8028 8817..9035 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig8028.17015.1prot_L-elsbetiae_contig8028.17015.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig8028 8817..9035 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig8028.17015.1

>prot_L-elsbetiae_contig8028.17015.1 ID=prot_L-elsbetiae_contig8028.17015.1|Name=mRNA_L-elsbetiae_contig8028.17015.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=73bp
MTVAGKSAKDTTVAVAGSTGYIGKFVAMECVRRGYKTIALTRNPDAVVEG
AEMVVADVTDPASIDAALAGRKV
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mRNA from alignment at L-elsbetiae_contig8028:8817..9035+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig8028.17015.1 ID=mRNA_L-elsbetiae_contig8028.17015.1|Name=mRNA_L-elsbetiae_contig8028.17015.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=219bp|location=Sequence derived from alignment at L-elsbetiae_contig8028:8817..9035+ (Laminarionema elsbetiae ELsaHSoW15)
ATGACAGTCGCGGGCAAGTCCGCGAAGGACACGACCGTGGCGGTGGCCGG
GTCGACGGGCTACATCGGCAAGTTCGTGGCGATGGAGTGCGTGAGGCGCG
GGTACAAGACGATCGCGCTCACCCGCAACCCGGACGCGGTGGTGGAGGGC
GCGGAGATGGTGGTGGCCGACGTTACGGACCCGGCTAGCATCGACGCCGC
GCTCGCCGGCCGAAAGGTG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig8028:8817..9035+

>mRNA_L-elsbetiae_contig8028.17015.1 ID=mRNA_L-elsbetiae_contig8028.17015.1|Name=mRNA_L-elsbetiae_contig8028.17015.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=438bp|location=Sequence derived from alignment at L-elsbetiae_contig8028:8817..9035+ (Laminarionema elsbetiae ELsaHSoW15)
ATGACAGTCGCGGGCAAGTCCGCGAAGGACACGACCGTGGCGGTGGCCGG
GTCGACGGGCTACATCGGCAAGTTCGTGGCGATGGAGTGCGTGAGGCGCG
GGTACAAGACGATCGCGCTCACCCGCAACCCGGACGCGGTGGTGGAGGGC
GCGGAGATGGTGGTGGCCGACGTTACGGACCCGGCTAGCATCGACGCCGC
GCTCGCCGGCCGAAAGGTGATGACAGTCGCGGGCAAGTCCGCGAAGGACA
CGACCGTGGCGGTGGCCGGGTCGACGGGCTACATCGGCAAGTTCGTGGCG
ATGGAGTGCGTGAGGCGCGGGTACAAGACGATCGCGCTCACCCGCAACCC
GGACGCGGTGGTGGAGGGCGCGGAGATGGTGGTGGCCGACGTTACGGACC
CGGCTAGCATCGACGCCGCGCTCGCCGGCCGAAAGGTG
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