mRNA_L-elsbetiae_contig802.17004.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig802.17004.1
Unique NamemRNA_L-elsbetiae_contig802.17004.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig802.17004.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig802contigL-elsbetiae_contig802:6431..7120 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size690
Cds size435
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig802.17004.1prot_L-elsbetiae_contig802.17004.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig802 6603..7037 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816886.9934049-UTR-L-elsbetiae_contig802:6430..66021622816886.9934049-UTR-L-elsbetiae_contig802:6430..6602Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig802 6431..6602 +
1691683887.7732036-UTR-L-elsbetiae_contig802:6430..66021691683887.7732036-UTR-L-elsbetiae_contig802:6430..6602Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig802 6431..6602 +
1622816887.0186567-UTR-L-elsbetiae_contig802:7037..71201622816887.0186567-UTR-L-elsbetiae_contig802:7037..7120Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig802 7038..7120 +
1691683887.7987504-UTR-L-elsbetiae_contig802:7037..71201691683887.7987504-UTR-L-elsbetiae_contig802:7037..7120Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig802 7038..7120 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816887.0058007-CDS-L-elsbetiae_contig802:6602..70371622816887.0058007-CDS-L-elsbetiae_contig802:6602..7037Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig802 6603..7037 +
1691683887.784932-CDS-L-elsbetiae_contig802:6602..70371691683887.784932-CDS-L-elsbetiae_contig802:6602..7037Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig802 6603..7037 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig802.17004.1

>prot_L-elsbetiae_contig802.17004.1 ID=prot_L-elsbetiae_contig802.17004.1|Name=mRNA_L-elsbetiae_contig802.17004.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=145bp
MVLPLKFAWECVLCVRIVGIEAYLRLGLHPGTLAVRERPEDPSVFEALLH
AYVCCSQGAGRLWNKKRSNLGVFVCTCGGEREFFLALFSARSPVWQDTAV
HSKYMCGRPCFVLMVSLRPCLVSICCPAPPPPPNPTTMFPYSAR*
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mRNA from alignment at L-elsbetiae_contig802:6431..7120+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig802.17004.1 ID=mRNA_L-elsbetiae_contig802.17004.1|Name=mRNA_L-elsbetiae_contig802.17004.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=690bp|location=Sequence derived from alignment at L-elsbetiae_contig802:6431..7120+ (Laminarionema elsbetiae ELsaHSoW15)
TCCAGCGTGAGTTTTCTCACGTATCTTTTTTCTTTCTTTTTTTAATTAAT
GTATACAAATGTTAGCAGTCTACGTCCGGTCTGTGAAAATATCGTTCCAC
AAAAGATAGTTCATGTATGGAAATTTTTCGTGCCGTGCGTGCGTGCAGCA
GTGATCGAATGGTCGCAAGGGTATGGTTTTGCCCCTGAAGTTCGCGTGGG
AGTGTGTGTTGTGTGTGCGCATTGTGGGAATCGAGGCTTATCTGCGGCTT
GGTTTGCACCCGGGGACCTTGGCGGTGAGGGAGAGGCCGGAAGACCCCAG
CGTTTTCGAAGCACTGCTACATGCATACGTTTGTTGTAGCCAAGGAGCGG
GGCGGCTCTGGAACAAGAAACGGAGTAACCTCGGTGTCTTTGTATGTACG
TGTGGAGGCGAACGAGAGTTTTTTCTTGCCCTGTTCTCTGCTCGCTCTCC
TGTTTGGCAGGATACTGCTGTACACTCAAAGTACATGTGTGGGAGGCCTT
GTTTTGTGCTCATGGTTTCCCTGCGCCCTTGTCTTGTTTCGATCTGCTGC
CCGGCGCCCCCCCCCCCCCCCAATCCGACCACCATGTTTCCTTATTCCGC
CCGTTAGATACACGTGTGGACCGCGGGCTAGCTCAGGCGATCCAGCAGGC
ACGTCTAGGCAAAAAGATGACGCAAAAGCAACTTGCGACG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig802:6431..7120+

>mRNA_L-elsbetiae_contig802.17004.1 ID=mRNA_L-elsbetiae_contig802.17004.1|Name=mRNA_L-elsbetiae_contig802.17004.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=870bp|location=Sequence derived from alignment at L-elsbetiae_contig802:6431..7120+ (Laminarionema elsbetiae ELsaHSoW15)
ATGGTTTTGCCCCTGAAGTTCGCGTGGGAGTGTGTGTTGTGTGTGCGCAT
TGTGGGAATCGAGGCTTATCTGCGGCTTGGTTTGCACCCGGGGACCTTGG
CGGTGAGGGAGAGGCCGGAAGACCCCAGCGTTTTCGAAGCACTGCTACAT
GCATACGTTTGTTGTAGCCAAGGAGCGGGGCGGCTCTGGAACAAGAAACG
GAGTAACCTCGGTGTCTTTGTATGTACGTGTGGAGGCGAACGAGAGTTTT
TTCTTGCCCTGTTCTCTGCTCGCTCTCCTGTTTGGCAGGATACTGCTGTA
CACTCAAAGTACATGTGTGGGAGGCCTTGTTTTGTGCTCATGGTTTCCCT
GCGCCCTTGTCTTGTTTCGATCTGCTGCCCGGCGCCCCCCCCCCCCCCCA
ATCCGACCACCATGTTTCCTTATTCCGCCCGTTAGATGGTTTTGCCCCTG
AAGTTCGCGTGGGAGTGTGTGTTGTGTGTGCGCATTGTGGGAATCGAGGC
TTATCTGCGGCTTGGTTTGCACCCGGGGACCTTGGCGGTGAGGGAGAGGC
CGGAAGACCCCAGCGTTTTCGAAGCACTGCTACATGCATACGTTTGTTGT
AGCCAAGGAGCGGGGCGGCTCTGGAACAAGAAACGGAGTAACCTCGGTGT
CTTTGTATGTACGTGTGGAGGCGAACGAGAGTTTTTTCTTGCCCTGTTCT
CTGCTCGCTCTCCTGTTTGGCAGGATACTGCTGTACACTCAAAGTACATG
TGTGGGAGGCCTTGTTTTGTGCTCATGGTTTCCCTGCGCCCTTGTCTTGT
TTCGATCTGCTGCCCGGCGCCCCCCCCCCCCCCCAATCCGACCACCATGT
TTCCTTATTCCGCCCGTTAG
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