mRNA_L-elsbetiae_contig802.17002.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig802.17002.1
Unique NamemRNA_L-elsbetiae_contig802.17002.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig802.17002.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig802contigL-elsbetiae_contig802:2386..2858 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size475
Cds size390
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816886.9489691-CDS-L-elsbetiae_contig802:2385..27751622816886.9489691-CDS-L-elsbetiae_contig802:2385..2775Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig802 2386..2775 +
1691683887.746623-CDS-L-elsbetiae_contig802:2385..27751691683887.746623-CDS-L-elsbetiae_contig802:2385..2775Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig802 2386..2775 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816886.9608448-UTR-L-elsbetiae_contig802:2775..28581622816886.9608448-UTR-L-elsbetiae_contig802:2775..2858Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig802 2776..2858 +
1691683887.759687-UTR-L-elsbetiae_contig802:2775..28581691683887.759687-UTR-L-elsbetiae_contig802:2775..2858Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig802 2776..2858 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig802.17002.1prot_L-elsbetiae_contig802.17002.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig802 2386..2775 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig802.17002.1

>prot_L-elsbetiae_contig802.17002.1 ID=prot_L-elsbetiae_contig802.17002.1|Name=mRNA_L-elsbetiae_contig802.17002.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=130bp
ELLLRGEGLYSILFCSVRPGARCLDGGGSEGKSSFPCCHDLIIATGLRSS
HAPAFIKNTENHSVLIGPVVNGVYDSSCRPPYFRNFTCRNIARYHKILQF
CPFLLCFMGVSCFADIEKKQRAEIVSRHE*
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mRNA from alignment at L-elsbetiae_contig802:2386..2858+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig802.17002.1 ID=mRNA_L-elsbetiae_contig802.17002.1|Name=mRNA_L-elsbetiae_contig802.17002.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=473bp|location=Sequence derived from alignment at L-elsbetiae_contig802:2386..2858+ (Laminarionema elsbetiae ELsaHSoW15)
GAACTGCTGCTGCGGGGAGAAGGGTTGTATTCGATTTTGTTTTGTTCTGT
GCGGCCCGGGGCACGCTGTTTGGATGGCGGGGGTTCTGAAGGGAAGAGTA
GCTTTCCGTGTTGTCATGACCTCATCATCGCGACAGGTCTTCGGAGCAGT
CATGCGCCAGCGTTCATAAAAAATACCGAAAACCATTCGGTGCTTATTGG
TCCTGTGGTGAATGGTGTGTATGATTCCAGCTGTAGGCCGCCGTATTTTC
GTAATTTCACCTGCCGAAATATTGCCAGATACCACAAAATCTTGCAATTT
TGCCCGTTTCTGCTGTGCTTTATGGGTGTTTCGTGTTTTGCCGATATCGA
GAAAAAACAGCGTGCAGAGATTGTTAGCAGGCATGAATGACGACCCAACA
GGTGGCAGGAACGGGCGAGTGCTCCAGCCGCTGAGTCCGACATTAGTTTT
CGGTTAATTTTCAGACCCGCCCC
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Coding sequence (CDS) from alignment at L-elsbetiae_contig802:2386..2858+

>mRNA_L-elsbetiae_contig802.17002.1 ID=mRNA_L-elsbetiae_contig802.17002.1|Name=mRNA_L-elsbetiae_contig802.17002.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=780bp|location=Sequence derived from alignment at L-elsbetiae_contig802:2386..2858+ (Laminarionema elsbetiae ELsaHSoW15)
GAACTGCTGCTGCGGGGAGAAGGGTTGTATTCGATTTTGTTTTGTTCTGT
GCGGCCCGGGGCACGCTGTTTGGATGGCGGGGGTTCTGAAGGGAAGAGTA
GCTTTCCGTGTTGTCATGACCTCATCATCGCGACAGGTCTTCGGAGCAGT
CATGCGCCAGCGTTCATAAAAAATACCGAAAACCATTCGGTGCTTATTGG
TCCTGTGGTGAATGGTGTGTATGATTCCAGCTGTAGGCCGCCGTATTTTC
GTAATTTCACCTGCCGAAATATTGCCAGATACCACAAAATCTTGCAATTT
TGCCCGTTTCTGCTGTGCTTTATGGGTGTTTCGTGTTTTGCCGATATCGA
GAAAAAACAGCGTGCAGAGATTGTTAGCAGGCATGAATGAGAACTGCTGC
TGCGGGGAGAAGGGTTGTATTCGATTTTGTTTTGTTCTGTGCGGCCCGGG
GCACGCTGTTTGGATGGCGGGGGTTCTGAAGGGAAGAGTAGCTTTCCGTG
TTGTCATGACCTCATCATCGCGACAGGTCTTCGGAGCAGTCATGCGCCAG
CGTTCATAAAAAATACCGAAAACCATTCGGTGCTTATTGGTCCTGTGGTG
AATGGTGTGTATGATTCCAGCTGTAGGCCGCCGTATTTTCGTAATTTCAC
CTGCCGAAATATTGCCAGATACCACAAAATCTTGCAATTTTGCCCGTTTC
TGCTGTGCTTTATGGGTGTTTCGTGTTTTGCCGATATCGAGAAAAAACAG
CGTGCAGAGATTGTTAGCAGGCATGAATGA
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