mRNA_L-elsbetiae_contig7995.16965.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig7995.16965.1
Unique NamemRNA_L-elsbetiae_contig7995.16965.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig7995.16965.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig7995contigL-elsbetiae_contig7995:2..919 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size918
Cds size513
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig7995.16965.1prot_L-elsbetiae_contig7995.16965.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig7995 103..615 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816883.2627192-UTR-L-elsbetiae_contig7995:1..1021622816883.2627192-UTR-L-elsbetiae_contig7995:1..102Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig7995 2..102 +
1691683885.0988648-UTR-L-elsbetiae_contig7995:1..1021691683885.0988648-UTR-L-elsbetiae_contig7995:1..102Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig7995 2..102 +
1622816883.2830808-UTR-L-elsbetiae_contig7995:615..9191622816883.2830808-UTR-L-elsbetiae_contig7995:615..919Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig7995 616..919 +
1691683885.1165686-UTR-L-elsbetiae_contig7995:615..9191691683885.1165686-UTR-L-elsbetiae_contig7995:615..919Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig7995 616..919 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816883.273087-CDS-L-elsbetiae_contig7995:102..6151622816883.273087-CDS-L-elsbetiae_contig7995:102..615Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7995 103..615 +
1691683885.107871-CDS-L-elsbetiae_contig7995:102..6151691683885.107871-CDS-L-elsbetiae_contig7995:102..615Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7995 103..615 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig7995.16965.1

>prot_L-elsbetiae_contig7995.16965.1 ID=prot_L-elsbetiae_contig7995.16965.1|Name=mRNA_L-elsbetiae_contig7995.16965.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=171bp
MRNHGDSPTFSASRGVWPATGGIEILLVSVGSARLVVTFCSSLRAKGGSR
RIYAIPTSTAIAESYDYAAGMGVIRHLSVSPSLPRIAVVRPLSFWAFGVC
LRGETTTLGRLTLFESARTRATQICDSLEIWASRASERLAKLYHYLANGR
RPLPLWCLGVGGCHAAAEQK*
back to top

mRNA from alignment at L-elsbetiae_contig7995:2..919+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig7995.16965.1 ID=mRNA_L-elsbetiae_contig7995.16965.1|Name=mRNA_L-elsbetiae_contig7995.16965.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=918bp|location=Sequence derived from alignment at L-elsbetiae_contig7995:2..919+ (Laminarionema elsbetiae ELsaHSoW15)
TATGTACGAGTTGGCCACACCCTACCAAGACCCTTGACTTTTTTTTTCTC
GAACGCCCACGGTGCACGTATCGCTGTGCTCGCGGTGTATCTGTGTAGAG
GATGAGAAATCATGGCGATTCCCCAACTTTCAGCGCCTCCCGTGGGGTGT
GGCCGGCGACTGGCGGGATCGAAATTTTGCTTGTGTCGGTCGGGTCGGCC
CGGCTGGTTGTAACTTTTTGTTCAAGTCTGAGAGCAAAAGGCGGCAGCCG
TCGGATATATGCGATTCCAACCTCTACGGCTATCGCCGAGTCGTACGATT
ATGCCGCCGGGATGGGTGTCATCCGCCATCTCTCTGTGTCTCCCTCCCTG
CCGCGAATAGCCGTTGTCCGCCCTCTCTCCTTTTGGGCGTTTGGGGTGTG
TTTACGCGGCGAAACTACAACGCTCGGGAGGTTGACACTTTTCGAATCTG
CCCGGACTAGAGCAACACAAATATGCGACAGTCTTGAGATATGGGCGAGT
CGAGCCTCTGAGAGATTGGCCAAGTTGTACCATTATCTCGCGAATGGGCG
TCGTCCACTCCCTCTGTGGTGTTTGGGCGTTGGGGGGTGTCACGCGGCCG
CGGAACAAAAGTAGACGGAGACTTGACGGAAACTTGTACAGATAGTCTAC
GCCCTGGCCAGAAATTCGGCCAAAGGTTTTTTCGTTTGCAGCCTCCAGCT
TCTGGCTTTTGGTATGTGGATCGCAAGGGTAGCTCGTGTGAGGTTTCCGT
ACACCCTGTGGTGACTGTCGGTAGTACTCCGATCGTCGCTGCAGTTTTGG
TAACAAAAGACAACATCTTGTTGGGTATGCATCCACGCATCCGCATGTAG
CTTGAACCTTGACTTGGAAAGCTTTGCATGTCTATTCCCTGGCTGCAGGG
CCGTTTTTTTTTTTTTTT
back to top

Coding sequence (CDS) from alignment at L-elsbetiae_contig7995:2..919+

>mRNA_L-elsbetiae_contig7995.16965.1 ID=mRNA_L-elsbetiae_contig7995.16965.1|Name=mRNA_L-elsbetiae_contig7995.16965.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1026bp|location=Sequence derived from alignment at L-elsbetiae_contig7995:2..919+ (Laminarionema elsbetiae ELsaHSoW15)
ATGAGAAATCATGGCGATTCCCCAACTTTCAGCGCCTCCCGTGGGGTGTG
GCCGGCGACTGGCGGGATCGAAATTTTGCTTGTGTCGGTCGGGTCGGCCC
GGCTGGTTGTAACTTTTTGTTCAAGTCTGAGAGCAAAAGGCGGCAGCCGT
CGGATATATGCGATTCCAACCTCTACGGCTATCGCCGAGTCGTACGATTA
TGCCGCCGGGATGGGTGTCATCCGCCATCTCTCTGTGTCTCCCTCCCTGC
CGCGAATAGCCGTTGTCCGCCCTCTCTCCTTTTGGGCGTTTGGGGTGTGT
TTACGCGGCGAAACTACAACGCTCGGGAGGTTGACACTTTTCGAATCTGC
CCGGACTAGAGCAACACAAATATGCGACAGTCTTGAGATATGGGCGAGTC
GAGCCTCTGAGAGATTGGCCAAGTTGTACCATTATCTCGCGAATGGGCGT
CGTCCACTCCCTCTGTGGTGTTTGGGCGTTGGGGGGTGTCACGCGGCCGC
GGAACAAAAGTAGATGAGAAATCATGGCGATTCCCCAACTTTCAGCGCCT
CCCGTGGGGTGTGGCCGGCGACTGGCGGGATCGAAATTTTGCTTGTGTCG
GTCGGGTCGGCCCGGCTGGTTGTAACTTTTTGTTCAAGTCTGAGAGCAAA
AGGCGGCAGCCGTCGGATATATGCGATTCCAACCTCTACGGCTATCGCCG
AGTCGTACGATTATGCCGCCGGGATGGGTGTCATCCGCCATCTCTCTGTG
TCTCCCTCCCTGCCGCGAATAGCCGTTGTCCGCCCTCTCTCCTTTTGGGC
GTTTGGGGTGTGTTTACGCGGCGAAACTACAACGCTCGGGAGGTTGACAC
TTTTCGAATCTGCCCGGACTAGAGCAACACAAATATGCGACAGTCTTGAG
ATATGGGCGAGTCGAGCCTCTGAGAGATTGGCCAAGTTGTACCATTATCT
CGCGAATGGGCGTCGTCCACTCCCTCTGTGGTGTTTGGGCGTTGGGGGGT
GTCACGCGGCCGCGGAACAAAAGTAG
back to top