mRNA_L-elsbetiae_contig7983.16954.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig7983.16954.1
Unique NamemRNA_L-elsbetiae_contig7983.16954.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig7983.16954.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig7983contigL-elsbetiae_contig7983:1838..2164 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size329
Cds size318
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816882.298952-UTR-L-elsbetiae_contig7983:1837..18461622816882.298952-UTR-L-elsbetiae_contig7983:1837..1846Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig7983 1838..1846 +
1691683884.4122353-UTR-L-elsbetiae_contig7983:1837..18461691683884.4122353-UTR-L-elsbetiae_contig7983:1837..1846Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig7983 1838..1846 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816882.3106349-CDS-L-elsbetiae_contig7983:1846..21641622816882.3106349-CDS-L-elsbetiae_contig7983:1846..2164Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7983 1847..2164 +
1691683884.4230554-CDS-L-elsbetiae_contig7983:1846..21641691683884.4230554-CDS-L-elsbetiae_contig7983:1846..2164Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7983 1847..2164 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig7983.16954.1prot_L-elsbetiae_contig7983.16954.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig7983 1847..2164 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig7983.16954.1

>prot_L-elsbetiae_contig7983.16954.1 ID=prot_L-elsbetiae_contig7983.16954.1|Name=mRNA_L-elsbetiae_contig7983.16954.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=106bp
MSSRSWVFGSTYCVCVCGPEVSSPIAVVTVAFAVFNICRVIPFAGVCVGP
QLRARAMIARSLELILPRKKARQAAMRENAPPRVRPARPAQTNTHENRLK
SKPNNT
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mRNA from alignment at L-elsbetiae_contig7983:1838..2164+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig7983.16954.1 ID=mRNA_L-elsbetiae_contig7983.16954.1|Name=mRNA_L-elsbetiae_contig7983.16954.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=327bp|location=Sequence derived from alignment at L-elsbetiae_contig7983:1838..2164+ (Laminarionema elsbetiae ELsaHSoW15)
CAGGGAGTCATGTCTTCACGCAGCTGGGTGTTTGGCAGTACATATTGTGT
CTGTGTTTGCGGACCTGAAGTAAGTTCCCCCATCGCCGTCGTCACCGTCG
CTTTCGCCGTATTTAACATTTGTCGAGTTATACCATTTGCCGGGGTCTGT
GTAGGACCTCAGCTCCGCGCAAGGGCGATGATTGCAAGGTCGCTGGAGTT
GATTTTGCCCCGCAAGAAAGCACGACAAGCAGCAATGCGCGAGAATGCCC
CCCCACGCGTCCGGCCTGCACGTCCTGCTCAAACAAACACCCACGAAAAC
AGGTTGAAAAGCAAGCCAAACAATACG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig7983:1838..2164+

>mRNA_L-elsbetiae_contig7983.16954.1 ID=mRNA_L-elsbetiae_contig7983.16954.1|Name=mRNA_L-elsbetiae_contig7983.16954.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=636bp|location=Sequence derived from alignment at L-elsbetiae_contig7983:1838..2164+ (Laminarionema elsbetiae ELsaHSoW15)
ATGTCTTCACGCAGCTGGGTGTTTGGCAGTACATATTGTGTCTGTGTTTG
CGGACCTGAAGTAAGTTCCCCCATCGCCGTCGTCACCGTCGCTTTCGCCG
TATTTAACATTTGTCGAGTTATACCATTTGCCGGGGTCTGTGTAGGACCT
CAGCTCCGCGCAAGGGCGATGATTGCAAGGTCGCTGGAGTTGATTTTGCC
CCGCAAGAAAGCACGACAAGCAGCAATGCGCGAGAATGCCCCCCCACGCG
TCCGGCCTGCACGTCCTGCTCAAACAAACACCCACGAAAACAGGTTGAAA
AGCAAGCCAAACAATACGATGTCTTCACGCAGCTGGGTGTTTGGCAGTAC
ATATTGTGTCTGTGTTTGCGGACCTGAAGTAAGTTCCCCCATCGCCGTCG
TCACCGTCGCTTTCGCCGTATTTAACATTTGTCGAGTTATACCATTTGCC
GGGGTCTGTGTAGGACCTCAGCTCCGCGCAAGGGCGATGATTGCAAGGTC
GCTGGAGTTGATTTTGCCCCGCAAGAAAGCACGACAAGCAGCAATGCGCG
AGAATGCCCCCCCACGCGTCCGGCCTGCACGTCCTGCTCAAACAAACACC
CACGAAAACAGGTTGAAAAGCAAGCCAAACAATACG
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