mRNA_L-elsbetiae_contig7963.16930.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig7963.16930.1
Unique NamemRNA_L-elsbetiae_contig7963.16930.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
BLAST of mRNA_L-elsbetiae_contig7963.16930.1 vs. uniprot
Match: D7G111_ECTSI (Glycine/D-amino acid oxidase-like protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G111_ECTSI)

HSP 1 Score: 85.1 bits (209), Expect = 1.960e-18
Identity = 38/39 (97.44%), Postives = 39/39 (100.00%), Query Frame = 1
Query:   31 QVTSRLVLDCMGNASPMVRQIRWGKKPEGVCLVVGSCAR 147
            +VTSRLVLDCMGNASPMVRQIRWGKKPEGVCLVVGSCAR
Sbjct:  220 EVTSRLVLDCMGNASPMVRQIRWGKKPEGVCLVVGSCAR 258          
BLAST of mRNA_L-elsbetiae_contig7963.16930.1 vs. uniprot
Match: A0A6H5L433_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L433_9PHAE)

HSP 1 Score: 85.1 bits (209), Expect = 4.390e-18
Identity = 38/39 (97.44%), Postives = 39/39 (100.00%), Query Frame = 1
Query:   31 QVTSRLVLDCMGNASPMVRQIRWGKKPEGVCLVVGSCAR 147
            +VTSRLVLDCMGNASPMVRQIRWGKKPEGVCLVVGSCAR
Sbjct:  318 EVTSRLVLDCMGNASPMVRQIRWGKKPEGVCLVVGSCAR 356          
BLAST of mRNA_L-elsbetiae_contig7963.16930.1 vs. uniprot
Match: A0A836CJX3_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CJX3_9STRA)

HSP 1 Score: 76.3 bits (186), Expect = 4.960e-16
Identity = 32/38 (84.21%), Postives = 36/38 (94.74%), Query Frame = 1
Query:   34 VTSRLVLDCMGNASPMVRQIRWGKKPEGVCLVVGSCAR 147
            VT+RLVLDCMGN SPMVRQIRWG+KP+G+CLVVG CAR
Sbjct:   80 VTARLVLDCMGNGSPMVRQIRWGRKPDGMCLVVGCCAR 117          
BLAST of mRNA_L-elsbetiae_contig7963.16930.1 vs. uniprot
Match: A0A383W046_TETOB (Uncharacterized protein n=1 Tax=Tetradesmus obliquus TaxID=3088 RepID=A0A383W046_TETOB)

HSP 1 Score: 77.8 bits (190), Expect = 1.640e-15
Identity = 33/49 (67.35%), Postives = 41/49 (83.67%), Query Frame = 1
Query:    1 STATPTVYPLQVTSRLVLDCMGNASPMVRQIRWGKKPEGVCLVVGSCAR 147
            S+ T   Y   +T+RL+LDCMG+ASP+VRQ+RWGKKP+GVCLVVG CAR
Sbjct:  232 SSGTRVQYASSITTRLLLDCMGHASPVVRQLRWGKKPDGVCLVVGGCAR 280          
BLAST of mRNA_L-elsbetiae_contig7963.16930.1 vs. uniprot
Match: A0A2P6V886_9CHLO (Fad dependent oxidoreductase n=1 Tax=Micractinium conductrix TaxID=554055 RepID=A0A2P6V886_9CHLO)

HSP 1 Score: 75.5 bits (184), Expect = 1.070e-14
Identity = 31/39 (79.49%), Postives = 39/39 (100.00%), Query Frame = 1
Query:   31 QVTSRLVLDCMGNASPMVRQIRWGKKPEGVCLVVGSCAR 147
            Q+T+RL+LDCMG+ASP+V+QIRWG+KP+GVCLVVGSCAR
Sbjct:  216 QLTARLLLDCMGHASPIVQQIRWGRKPDGVCLVVGSCAR 254          
BLAST of mRNA_L-elsbetiae_contig7963.16930.1 vs. uniprot
Match: A0A2R6X2D3_MARPO (Uncharacterized protein n=2 Tax=Marchantia polymorpha TaxID=3197 RepID=A0A2R6X2D3_MARPO)

HSP 1 Score: 72.8 bits (177), Expect = 9.490e-14
Identity = 29/36 (80.56%), Postives = 36/36 (100.00%), Query Frame = 1
Query:   40 SRLVLDCMGNASPMVRQIRWGKKPEGVCLVVGSCAR 147
            +RLVLDCMGNASP+VRQ+RWG++P+GVCLVVG+CAR
Sbjct:  299 ARLVLDCMGNASPIVRQVRWGQRPDGVCLVVGTCAR 334          
BLAST of mRNA_L-elsbetiae_contig7963.16930.1 vs. uniprot
Match: A0A7S0KT21_MICPS (Hypothetical protein n=1 Tax=Micromonas pusilla TaxID=38833 RepID=A0A7S0KT21_MICPS)

HSP 1 Score: 71.2 bits (173), Expect = 3.310e-13
Identity = 30/41 (73.17%), Postives = 37/41 (90.24%), Query Frame = 1
Query:   25 PLQVTSRLVLDCMGNASPMVRQIRWGKKPEGVCLVVGSCAR 147
            P  +T+RLV+DCMG ASP+VRQ RWG+KP+GVCLVVG+CAR
Sbjct:  279 PGGITARLVVDCMGFASPIVRQARWGQKPDGVCLVVGACAR 319          
BLAST of mRNA_L-elsbetiae_contig7963.16930.1 vs. uniprot
Match: A0A5J4Y8J5_9CHLO (Uncharacterized protein n=1 Tax=Trebouxia sp. A1-2 TaxID=2608996 RepID=A0A5J4Y8J5_9CHLO)

HSP 1 Score: 70.1 bits (170), Expect = 8.440e-13
Identity = 27/38 (71.05%), Postives = 34/38 (89.47%), Query Frame = 1
Query:   34 VTSRLVLDCMGNASPMVRQIRWGKKPEGVCLVVGSCAR 147
            VT +L++DCMGN SP+VRQ+RWG KP+GVC+VVGSC R
Sbjct:  275 VTGQLIIDCMGNFSPIVRQVRWGHKPDGVCMVVGSCCR 312          
BLAST of mRNA_L-elsbetiae_contig7963.16930.1 vs. uniprot
Match: A0A2P6TLF7_CHLSO (Fad dependent oxidoreductase n=1 Tax=Chlorella sorokiniana TaxID=3076 RepID=A0A2P6TLF7_CHLSO)

HSP 1 Score: 69.3 bits (168), Expect = 1.580e-12
Identity = 28/38 (73.68%), Postives = 37/38 (97.37%), Query Frame = 1
Query:   34 VTSRLVLDCMGNASPMVRQIRWGKKPEGVCLVVGSCAR 147
            +T+RLVLD MG+ASP+V+Q+RWG+KP+GVCLVVG+CAR
Sbjct:  297 LTARLVLDAMGHASPVVQQVRWGQKPDGVCLVVGTCAR 334          
BLAST of mRNA_L-elsbetiae_contig7963.16930.1 vs. uniprot
Match: A0A7S1XBZ8_9CHLO (Hypothetical protein (Fragment) n=1 Tax=Tetraselmis chuii TaxID=63592 RepID=A0A7S1XBZ8_9CHLO)

HSP 1 Score: 68.6 bits (166), Expect = 1.910e-12
Identity = 26/39 (66.67%), Postives = 36/39 (92.31%), Query Frame = 1
Query:   31 QVTSRLVLDCMGNASPMVRQIRWGKKPEGVCLVVGSCAR 147
            ++++RLVLDCMG+ SP+ RQ+RWG KP+G+CLVVGSC+R
Sbjct:   77 ELSARLVLDCMGHGSPITRQLRWGNKPDGMCLVVGSCSR 115          
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig7963.16930.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G111_ECTSI1.960e-1897.44Glycine/D-amino acid oxidase-like protein n=1 Tax=... [more]
A0A6H5L433_9PHAE4.390e-1897.44Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A836CJX3_9STRA4.960e-1684.21Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A383W046_TETOB1.640e-1567.35Uncharacterized protein n=1 Tax=Tetradesmus obliqu... [more]
A0A2P6V886_9CHLO1.070e-1479.49Fad dependent oxidoreductase n=1 Tax=Micractinium ... [more]
A0A2R6X2D3_MARPO9.490e-1480.56Uncharacterized protein n=2 Tax=Marchantia polymor... [more]
A0A7S0KT21_MICPS3.310e-1373.17Hypothetical protein n=1 Tax=Micromonas pusilla Ta... [more]
A0A5J4Y8J5_9CHLO8.440e-1371.05Uncharacterized protein n=1 Tax=Trebouxia sp. A1-2... [more]
A0A2P6TLF7_CHLSO1.580e-1273.68Fad dependent oxidoreductase n=1 Tax=Chlorella sor... [more]
A0A7S1XBZ8_9CHLO1.910e-1266.67Hypothetical protein (Fragment) n=1 Tax=Tetraselmi... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig7963contigL-elsbetiae_contig7963:8815..8961 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score85.5
Seed ortholog evalue7.5e-15
Seed eggNOG ortholog2880.D7G111
Hectar predicted targeting categoryno signal peptide or anchor
EggNOG OGs28PI8@1,2QW6A@2759
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Ec32 ortholog descriptionglycine/D-amino acid oxidase-like protein
Ec32 orthologEc-22_001580.1
Exons1
Model size147
Cds size147
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816880.580014-CDS-L-elsbetiae_contig7963:8814..89611622816880.580014-CDS-L-elsbetiae_contig7963:8814..8961Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7963 8815..8961 -
1691683883.2855124-CDS-L-elsbetiae_contig7963:8814..89611691683883.2855124-CDS-L-elsbetiae_contig7963:8814..8961Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7963 8815..8961 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig7963.16930.1prot_L-elsbetiae_contig7963.16930.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig7963 8815..8961 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig7963.16930.1

>prot_L-elsbetiae_contig7963.16930.1 ID=prot_L-elsbetiae_contig7963.16930.1|Name=mRNA_L-elsbetiae_contig7963.16930.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=49bp
STATPTVYPLQVTSRLVLDCMGNASPMVRQIRWGKKPEGVCLVVGSCAR
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mRNA from alignment at L-elsbetiae_contig7963:8815..8961-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig7963.16930.1 ID=mRNA_L-elsbetiae_contig7963.16930.1|Name=mRNA_L-elsbetiae_contig7963.16930.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=147bp|location=Sequence derived from alignment at L-elsbetiae_contig7963:8815..8961- (Laminarionema elsbetiae ELsaHSoW15)
TCTACCGCCACTCCAACTGTGTATCCCCTGCAGGTGACCTCCCGGCTCGT GCTCGACTGCATGGGGAACGCGTCGCCGATGGTGCGGCAGATCCGCTGGG GAAAGAAGCCCGAGGGCGTCTGCTTAGTGGTCGGCTCGTGCGCTAGG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig7963:8815..8961-

>mRNA_L-elsbetiae_contig7963.16930.1 ID=mRNA_L-elsbetiae_contig7963.16930.1|Name=mRNA_L-elsbetiae_contig7963.16930.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=294bp|location=Sequence derived from alignment at L-elsbetiae_contig7963:8815..8961- (Laminarionema elsbetiae ELsaHSoW15)
TCTACCGCCACTCCAACTGTGTATCCCCTGCAGGTGACCTCCCGGCTCGT
GCTCGACTGCATGGGGAACGCGTCGCCGATGGTGCGGCAGATCCGCTGGG
GAAAGAAGCCCGAGGGCGTCTGCTTAGTGGTCGGCTCGTGCGCTAGGTCT
ACCGCCACTCCAACTGTGTATCCCCTGCAGGTGACCTCCCGGCTCGTGCT
CGACTGCATGGGGAACGCGTCGCCGATGGTGCGGCAGATCCGCTGGGGAA
AGAAGCCCGAGGGCGTCTGCTTAGTGGTCGGCTCGTGCGCTAGG
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