prot_L-elsbetiae_contig772.16670.1 (polypeptide) Laminarionema elsbetiae ELsaHSoW15

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_L-elsbetiae_contig772.16670.1
Unique Nameprot_L-elsbetiae_contig772.16670.1
Typepolypeptide
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Sequence length135
Homology
BLAST of mRNA_L-elsbetiae_contig772.16670.1 vs. uniprot
Match: D7G3E5_ECTSI (Spt4 domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G3E5_ECTSI)

HSP 1 Score: 240 bits (613), Expect = 6.030e-80
Identity = 117/136 (86.03%), Postives = 123/136 (90.44%), Query Frame = 0
Query:    1 MSDHEYDEGM--EEEGQEEEFPWAEIPTSLKGLRACKRCSLVKGNDQFVNHGCENCQFLQMESDQARVQDCTTTYFSGLVAMMDPESSWVGKWQRIGECRPGMYAIEVVGELPQEVLEFLEEKRIPFHCKPPDSTK 134
            MS + Y +G+  EEEG +E F  AEIPTSLKGLRACKRCSLVKGNDQFVNHGCENC FLQMESDQARVQDCTTTYFSGL+AMMDPESSWVGKWQRI ECRPGMYAIEVVGELP EVLEFLE+KRIPFHCKPPDS K
Sbjct:    1 MSYNNYGDGLDLEEEGLDE-FAGAEIPTSLKGLRACKRCSLVKGNDQFVNHGCENCPFLQMESDQARVQDCTTTYFSGLIAMMDPESSWVGKWQRISECRPGMYAIEVVGELPGEVLEFLEQKRIPFHCKPPDSAK 135          
BLAST of mRNA_L-elsbetiae_contig772.16670.1 vs. uniprot
Match: A0A7S3LYU5_9STRA (Hypothetical protein n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3LYU5_9STRA)

HSP 1 Score: 141 bits (356), Expect = 5.720e-41
Identity = 56/110 (50.91%), Postives = 85/110 (77.27%), Query Frame = 0
Query:   16 EEEFPWAEIPTSLKGLRACKRCSLVKGNDQFVNHGCENCQFLQMESDQARVQDCTTTYFSGLVAMMDPESSWVGKWQRIGECRPGMYAIEVVGELPQEVLEFLEEKRIPF 125
            +EE+  A+IP   KGLRAC RCSL+K  +QF + GCENC+F+ +E ++ R+++CTT+YF G +A+++P+ SWV KWQRI + +PG+YAIE++GELP +V+E  E   +P+
Sbjct:    4 DEEYITADIPDEFKGLRACLRCSLIKTFEQFNDKGCENCEFIDLEGNKGRIEECTTSYFEGAIALVEPQGSWVAKWQRIAQYQPGLYAIEMIGELPDDVIEHCENMGLPY 113          
BLAST of mRNA_L-elsbetiae_contig772.16670.1 vs. uniprot
Match: A0A835Z5B7_9STRA (Spt4/RpoE2 zinc finger-domain-containing protein n=2 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z5B7_9STRA)

HSP 1 Score: 140 bits (354), Expect = 1.470e-40
Identity = 60/109 (55.05%), Postives = 79/109 (72.48%), Query Frame = 0
Query:   22 AEIPTSLKGLRACKRCSLVKGNDQFVNHGCENCQFLQMESDQARVQDCTTTYFSGLVAMMDPESSWVGKWQRIGECRPGMYAIEVVGELPQEVLEFLEEKRIPFHCKPP 130
            A++P  LK LRACKRC+LVK   QF   GCENC FL++E    RV +CT++YFSG++AM++P+ SWV +WQRI   +PGMYAIEV+GE P    E++ E  I + CKPP
Sbjct:   21 AQVPGELKALRACKRCALVKTLTQFTEQGCENCPFLRIEESAERVHECTSSYFSGMIAMLNPKESWVARWQRIRAFKPGMYAIEVIGEFPPHDQEYMAENGIRWQCKPP 129          
BLAST of mRNA_L-elsbetiae_contig772.16670.1 vs. uniprot
Match: W4GN44_9STRA (Spt4 domain-containing protein n=4 Tax=Aphanomyces TaxID=100860 RepID=W4GN44_9STRA)

HSP 1 Score: 131 bits (329), Expect = 7.260e-37
Identity = 57/104 (54.81%), Postives = 74/104 (71.15%), Query Frame = 0
Query:   22 AEIPTSLKGLRACKRCSLVKGNDQFVNHGCENCQFLQMESDQARVQDCTTTYFSGLVAMMDPESSWVGKWQRIGECRPGMYAIEVVGELPQEVLEFLEEKRIPF 125
            AEIPT+ + LRAC  CSLVK   QF   GC+NC FL M+ ++ RV DCTT YF G++AMM P+ SWV KW+RIG+  PG+YA+ V GEL   + +FLEE+ I +
Sbjct:   17 AEIPTTFRELRACMICSLVKTYSQFYESGCDNCGFLNMQDNRTRVTDCTTAYFEGMIAMMQPKESWVAKWRRIGKFVPGIYAVAVTGELNDSIKKFLEERNISY 120          
BLAST of mRNA_L-elsbetiae_contig772.16670.1 vs. uniprot
Match: A0A7S2IAX2_9STRA (Hypothetical protein n=1 Tax=Helicotheca tamesis TaxID=374047 RepID=A0A7S2IAX2_9STRA)

HSP 1 Score: 132 bits (331), Expect = 8.590e-37
Identity = 65/133 (48.87%), Postives = 82/133 (61.65%), Query Frame = 0
Query:    3 DHEYDEGMEEEGQEEE---FPWAEIPTSLKGLRACKRCSLVKGNDQFVNHGCENCQFLQMESDQARVQDCTTTYFSGLVAMMDPESSWVGKWQRIGECRPGMYAIEVVGELPQEVLEFLEEKRIPFHCKPPDS 132
            D E  EG EEE   E+      A  P+SL+G+RACKRC ++K  DQF N GCENC FLQME    R   CTT +F G  A+MDP +SWV KW R+    PG+YAI V G+  +E+ E LE +   + C+PP S
Sbjct:   20 DDEAGEGEEEEELPEQVLNLAQARTPSSLRGMRACKRCGILKTFDQFFNEGCENCPFLQMEGGTERCNRCTTAFFEGQAAVMDPRASWVAKWLRVDAYVPGVYAISVTGQFDREIEEELENRGCRWRCRPPTS 152          
BLAST of mRNA_L-elsbetiae_contig772.16670.1 vs. uniprot
Match: K3WRG9_GLOUD (Spt4 domain-containing protein n=33 Tax=Oomycota TaxID=4762 RepID=K3WRG9_GLOUD)

HSP 1 Score: 130 bits (327), Expect = 1.700e-36
Identity = 55/107 (51.40%), Postives = 75/107 (70.09%), Query Frame = 0
Query:   22 AEIPTSLKGLRACKRCSLVKGNDQFVNHGCENCQFLQMESDQARVQDCTTTYFSGLVAMMDPESSWVGKWQRIGECRPGMYAIEVVGELPQEVLEFLEEKRIPFHCK 128
            A+IP + + LRAC  CSL+K   QF + GCENC FLQM  ++ RV +CT+ YF G++AMM P+ SWV KWQRI    PG+YA+ V GELP+ +  FLE++ IP+  +
Sbjct:   21 ADIPNTFRELRACMTCSLIKTFTQFYDTGCENCAFLQMADNRQRVAECTSAYFEGMIAMMQPKESWVAKWQRIVRLIPGIYAVSVSGELPESIKRFLEDRNIPYRVQ 127          
BLAST of mRNA_L-elsbetiae_contig772.16670.1 vs. uniprot
Match: A0A067BG27_SAPPC (Spt4 domain-containing protein n=3 Tax=Saprolegniaceae TaxID=4764 RepID=A0A067BG27_SAPPC)

HSP 1 Score: 128 bits (321), Expect = 1.120e-35
Identity = 55/104 (52.88%), Postives = 71/104 (68.27%), Query Frame = 0
Query:   22 AEIPTSLKGLRACKRCSLVKGNDQFVNHGCENCQFLQMESDQARVQDCTTTYFSGLVAMMDPESSWVGKWQRIGECRPGMYAIEVVGELPQEVLEFLEEKRIPF 125
            AEIPT+ + LRAC  CSLVK   QF   GC+NC  L M+ ++ RV DCTT YF G++AMM P  SWV KW+RIG   PG+YA+ V GEL   + ++LE+  IP+
Sbjct:   15 AEIPTTFRELRACMICSLVKTYSQFYESGCDNCAVLNMQDNRQRVTDCTTAYFEGMIAMMQPRESWVAKWRRIGRFVPGIYAVSVTGELNDSIKKYLEDSNIPY 118          
BLAST of mRNA_L-elsbetiae_contig772.16670.1 vs. uniprot
Match: A0A814IDH4_9BILA (Transcription elongation factor SPT4 n=1 Tax=Brachionus calyciflorus TaxID=104777 RepID=A0A814IDH4_9BILA)

HSP 1 Score: 127 bits (318), Expect = 2.760e-35
Identity = 56/108 (51.85%), Postives = 75/108 (69.44%), Query Frame = 0
Query:   22 AEIPTSLKGLRACKRCSLVKGNDQFVNHGCENCQ-FLQMESDQARVQDCTTTYFSGLVAMMDPESSWVGKWQRIGECRPGMYAIEVVGELPQEVLEFLEEKRIPFHCK 128
            A IP SLKGLRAC+ CSL+K  DQF N GC+NC+ FL++  ++ R+ DCT+  F G++AMMDP+ SWV KWQRI     GMYAI V G+LP  ++  L +  IP+  +
Sbjct:    3 ASIPASLKGLRACRVCSLIKTLDQFFNEGCDNCERFLRLRGNRDRIIDCTSANFDGMIAMMDPQDSWVAKWQRIDHQVRGMYAISVSGDLPNHIIRILNDNDIPYKTR 110          
BLAST of mRNA_L-elsbetiae_contig772.16670.1 vs. uniprot
Match: A0A1W0AA13_9STRA (Transcription elongation factor SPT4 n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1W0AA13_9STRA)

HSP 1 Score: 124 bits (312), Expect = 2.610e-34
Identity = 53/104 (50.96%), Postives = 71/104 (68.27%), Query Frame = 0
Query:   22 AEIPTSLKGLRACKRCSLVKGNDQFVNHGCENCQFLQMESDQARVQDCTTTYFSGLVAMMDPESSWVGKWQRIGECRPGMYAIEVVGELPQEVLEFLEEKRIPF 125
            AEIPT+ + LRAC  CSLVK   QF   GC+NC  L M+ ++ RV DCTT YF G++AMM P  SWV KW+RIG   PG+YA+ V GEL + + ++LE+  + +
Sbjct:   15 AEIPTTFRELRACMVCSLVKTYSQFYESGCDNCTVLNMQDNRQRVTDCTTAYFEGMIAMMQPRESWVAKWRRIGRHVPGIYAVSVTGELTENIKKYLEDNNMTY 118          
BLAST of mRNA_L-elsbetiae_contig772.16670.1 vs. uniprot
Match: A0A3M7RG44_BRAPC (Transcription elongation factor SPT4 n=1 Tax=Brachionus plicatilis TaxID=10195 RepID=A0A3M7RG44_BRAPC)

HSP 1 Score: 124 bits (311), Expect = 3.190e-34
Identity = 56/108 (51.85%), Postives = 75/108 (69.44%), Query Frame = 0
Query:   22 AEIPTSLKGLRACKRCSLVKGNDQFVNHGCENC-QFLQMESDQARVQDCTTTYFSGLVAMMDPESSWVGKWQRIGECRPGMYAIEVVGELPQEVLEFLEEKRIPFHCK 128
            A IP++L+ LRACK CSL+K  DQF N GC+NC +FL ++ ++ RV DCT++ F G++AMMDP  SWV KWQR+     GMYAI V GELP  +   L EK +P+  +
Sbjct:    3 ASIPSTLRDLRACKICSLIKTLDQFDNEGCDNCDEFLHLKGNRDRVFDCTSSNFDGMIAMMDPSDSWVAKWQRVDHFVRGMYAISVSGELPDAIKRMLREKDMPYRTR 110          
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig772.16670.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G3E5_ECTSI6.030e-8086.03Spt4 domain-containing protein n=2 Tax=Ectocarpus ... [more]
A0A7S3LYU5_9STRA5.720e-4150.91Hypothetical protein n=1 Tax=Spumella elongata Tax... [more]
A0A835Z5B7_9STRA1.470e-4055.05Spt4/RpoE2 zinc finger-domain-containing protein n... [more]
W4GN44_9STRA7.260e-3754.81Spt4 domain-containing protein n=4 Tax=Aphanomyces... [more]
A0A7S2IAX2_9STRA8.590e-3748.87Hypothetical protein n=1 Tax=Helicotheca tamesis T... [more]
K3WRG9_GLOUD1.700e-3651.40Spt4 domain-containing protein n=33 Tax=Oomycota T... [more]
A0A067BG27_SAPPC1.120e-3552.88Spt4 domain-containing protein n=3 Tax=Saprolegnia... [more]
A0A814IDH4_9BILA2.760e-3551.85Transcription elongation factor SPT4 n=1 Tax=Brach... [more]
A0A1W0AA13_9STRA2.610e-3450.96Transcription elongation factor SPT4 n=1 Tax=Thrau... [more]
A0A3M7RG44_BRAPC3.190e-3451.85Transcription elongation factor SPT4 n=1 Tax=Brach... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR022800Spt4/RpoE2 zinc fingerSMARTSM01389Spt4_2coord: 31..107
e-value: 5.4E-39
score: 145.5
IPR022800Spt4/RpoE2 zinc fingerPFAMPF06093Spt4coord: 31..106
e-value: 3.4E-32
score: 110.4
IPR038510Spt4 superfamilyGENE3D3.30.40.210coord: 19..122
e-value: 1.1E-40
score: 139.7
IPR009287Transcription initiation Spt4PIRSFPIRSF025023Spt4coord: 19..133
e-value: 1.4E-42
score: 142.2
IPR009287Transcription initiation Spt4PANTHERPTHR12882SUPPRESSOR OF TY 4coord: 20..125
IPR029040RNA polymerase subunit RPABC4/transcription elongation factor Spt4SUPERFAMILY63393RNA polymerase subunitscoord: 25..106

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig772contigL-elsbetiae_contig772:24003..26890 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig772.16670.1mRNA_L-elsbetiae_contig772.16670.1Laminarionema elsbetiae ELsaHSoW15mRNAL-elsbetiae_contig772 23780..27049 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_L-elsbetiae_contig772.16670.1 ID=prot_L-elsbetiae_contig772.16670.1|Name=mRNA_L-elsbetiae_contig772.16670.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=135bp
MSDHEYDEGMEEEGQEEEFPWAEIPTSLKGLRACKRCSLVKGNDQFVNHG
CENCQFLQMESDQARVQDCTTTYFSGLVAMMDPESSWVGKWQRIGECRPG
MYAIEVVGELPQEVLEFLEEKRIPFHCKPPDSTK*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR022800Spt4/RpoE2_Znf
IPR038510Spt4_sf
IPR009287Spt4
IPR029040RPABC4/Spt4