mRNA_L-elsbetiae_contig77.16638.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig77.16638.1
Unique NamemRNA_L-elsbetiae_contig77.16638.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig77.16638.1 vs. uniprot
Match: D7G6E5_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G6E5_ECTSI)

HSP 1 Score: 433 bits (1114), Expect = 3.290e-145
Identity = 234/298 (78.52%), Postives = 262/298 (87.92%), Query Frame = 1 
Query:    1 MKFATALVGAGALCASTDAFVPAAVPAGSR-FVPQSSALASSVSAV-PGRSGDVMMSLGGGGSKRGGGPKSVSSKITNIFRGTSKKGGXXXXXXXXXXD-GKVPPLGASASSEGDGDKKKAAGLGILWMAYNSLLESQPLLAKSLTSMTGFALGDVLAQKFIDKKEEFDYTRLMKLASFGALVHGSTGHFFYNFLDAKLPGATVMTVVKKVFTDQVLWNPIFGCMFFGYMGAVDGLGPAAISDKIKNNLWTSVRGSWSVWPIAHAINFRWVPTPQRMLYINTIQIFYNCFLSVIAQRE 885
            MKF TALVGAGALCASTDAFVPAAVPA S  FV + S + ++  A+   R GDVMMSLGGGGSK+GG P+SVSSKITNIFRG S+KG XXXXXXXXXX  GKVPPLGAS+S+EGDG+KK A GLG++W AY SLL SQPLL KSLTSMTGFALGD+LAQKFIDKKEE D  RL+KLASFGAL+HGS+GHFFYNFLD+K+PG   +TV KKVF DQVLWNPIFGCMFFGYMGAVDG+GP+ IS+KIKNNLWTSV+GSW+VWP+AHAINFR +PT QR+LYINTIQIFYNCFLSVIAQRE
Sbjct:    1 MKFTTALVGAGALCASTDAFVPAAVPASSSTFVSKRSVVDAAAPAILASRGGDVMMSLGGGGSKKGGLPQSVSSKITNIFRGGSRKGNXXXXXXXXXXXXGKVPPLGASSSAEGDGEKK-AKGLGVIWAAYMSLLASQPLLTKSLTSMTGFALGDLLAQKFIDKKEEIDLPRLLKLASFGALIHGSSGHFFYNFLDSKIPGTAALTVAKKVFIDQVLWNPIFGCMFFGYMGAVDGMGPSGISEKIKNNLWTSVKGSWTVWPVAHAINFRMIPTSQRLLYINTIQIFYNCFLSVIAQRE 297
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BLAST of mRNA_L-elsbetiae_contig77.16638.1 vs. uniprot
Match: A0A835Z9Q4_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z9Q4_9STRA)

HSP 1 Score: 281 bits (719), Expect = 7.360e-86
Identity = 137/233 (58.80%), Postives = 173/233 (74.25%), Query Frame = 1 
Query:  187 RGGGPKSVSSKITNIFRGTSKKGGXXXXXXXXXXDGKVPPLGASASSEGDGD-KKKAAGLGILWMAYNSLLESQPLLAKSLTSMTGFALGDVLAQKFIDKKEEFDYTRLMKLASFGALVHGSTGHFFYNFLDAKLPGATVMTVVKKVFTDQVLWNPIFGCMFFGYMGAVDGLGPAAISDKIKNNLWTSVRGSWSVWPIAHAINFRWVPTPQRMLYINTIQIFYNCFLSVIAQR 882
            +GG   S    I N+F G +K GG    XXXXXX  K PP G  ++S   GD KKKA GL  +W AYN+ L+ +P+L K+LTSM GF LGD LAQKFI K E+ D+ RL ++ASFG L+HG+TGHFFY  LD+K+PG   +TV  KVF DQ +WNPIFGCMFFGYMG  +GL P+A+  +I+NNLW SV+GSW+VWP+AHAINFR +PT QR+LYIN++QI YN FLS+++QR
Sbjct:   55 KGGFRSSPGGIIRNVFMGKNKSGGGNINXXXXXXXXKGPPTGPLSASSASGDGKKKAGGLMAIWAAYNNSLDKRPILTKALTSMIGFGLGDFLAQKFISKSEKIDWERLGRMASFGLLIHGTTGHFFYGMLDSKIPGTAALTVATKVFIDQAIWNPIFGCMFFGYMGFAEGLSPSAVKARIQNNLWASVKGSWTVWPVAHAINFRCIPTSQRLLYINSVQIGYNMFLSILSQR 287
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BLAST of mRNA_L-elsbetiae_contig77.16638.1 vs. uniprot
Match: A0A7S2FYX3_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2FYX3_9STRA)

HSP 1 Score: 245 bits (626), Expect = 5.760e-73
Identity = 120/193 (62.18%), Postives = 146/193 (75.65%), Query Frame = 1 
Query:  307 LGASASSEGDGDKKKAAGLGILWMAYNSLLESQPLLAKSLTSMTGFALGDVLAQKFIDKKEEFDYTRLMKLASFGALVHGSTGHFFYNFLDAKLPGATVMTVVKKVFTDQVLWNPIFGCMFFGYMGAVDGLGPAAISDKIKNNLWTSVRGSWSVWPIAHAINFRWVPTPQRMLYINTIQIFYNCFLSVIAQRE 885
            L A AS  GDGD K+  G G LW AYN+ LE+ P+L K+LTSM GF LGD+LAQ F++KK E+D  R ++LASFG L+HG+TGH+FY  LD  +PG   M V  KV  DQVLWNPIFG MFF YMG  +G GPAA++ K+K +L T V GSW+VWPIAHAINFR++PT QR+LYINTIQIFYN FLS+I  +E
Sbjct:   66 LNADASG-GDGDAKED-GQG-LWAAYNNKLETNPILTKALTSMIGFTLGDILAQNFVEKKGEYDIMRTIRLASFGFLIHGTTGHWFYGKLDKAIPGTGAMQVFSKVGIDQVLWNPIFGVMFFSYMGFTNGDGPAAVAAKVKRDLMTQVTGSWTVWPIAHAINFRFIPTSQRLLYINTIQIFYNVFLSIIGNKE 255
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BLAST of mRNA_L-elsbetiae_contig77.16638.1 vs. uniprot
Match: A0A7S2XWX9_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2XWX9_9STRA)

HSP 1 Score: 238 bits (608), Expect = 9.480e-70
Identity = 111/198 (56.06%), Postives = 139/198 (70.20%), Query Frame = 1 
Query:  292 GKVPPLG--ASASSEGDGDKKKAAGLGILWMAYNSLLESQPLLAKSLTSMTGFALGDVLAQKFIDKKEEFDYTRLMKLASFGALVHGSTGHFFYNFLDAKLPGATVMTVVKKVFTDQVLWNPIFGCMFFGYMGAVDGLGPAAISDKIKNNLWTSVRGSWSVWPIAHAINFRWVPTPQRMLYINTIQIFYNCFLSVIAQ 879
            G VPP    ASASSEG  +   +     LW AYN+ LES P+  K+LTS+ GF+LGD+LAQKF+   E FD+ R+ +LASFG L HG  GH+FY FLD K+PG  +  V  KV  DQ++WNPIFG  F GYMG  +G     +  KIKN+L  +V GSW+VWPIAHAINFR++PT QR+LYIN+IQ+FYNCFLS +A 
Sbjct:   89 GLVPPRNSEASASSEGGDNNSGSNPFASLWAAYNAALESSPITTKALTSLVGFSLGDILAQKFLSAGEPFDFLRMARLASFGLLFHGPVGHYFYGFLDTKIPGTALSVVASKVAIDQIIWNPIFGTFFLGYMGFAEGKNAGEVGQKIKNDLVKAVTGSWTVWPIAHAINFRFIPTSQRLLYINSIQVFYNCFLSFLAS 286
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BLAST of mRNA_L-elsbetiae_contig77.16638.1 vs. uniprot
Match: W7U673_9STRA (Mpv17-like protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7U673_9STRA)

HSP 1 Score: 237 bits (605), Expect = 2.030e-69
Identity = 108/184 (58.70%), Postives = 137/184 (74.46%), Query Frame = 1 
Query:  334 DGDKKKAAGLGILWMAYNSLLESQPLLAKSLTSMTGFALGDVLAQKFIDKKEEFDYTRLMKLASFGALVHGSTGHFFYNFLDAKLPGATVMTVVKKVFTDQVLWNPIFGCMFFGYMGAVDGLGPAAISDKIKNNLWTSVRGSWSVWPIAHAINFRWVPTPQRMLYINTIQIFYNCFLSVIAQRE 885
            +G+K     L +LW  YN LL+ QPLL K+LTS  GF++GD+LAQKFIDK E  D  RL+KLA FG LVHG TGH+FY FLD K+PG + +TV  KV  DQ+LWNPIFG MFFG++G  +G     I ++I+ +LW SV+GSW+VWPIAHAINFR++P  QR+LYIN++QI YN FLS +A R 
Sbjct:   92 EGNKGGENPLQLLWKGYNQLLKDQPLLTKALTSFVGFSVGDLLAQKFIDKSEVVDLKRLLKLAFFGLLVHGPTGHYFYGFLDGKMPGTSAVTVASKVAIDQLLWNPIFGTMFFGWLGLTEGQNLEGIKNRIEKDLWASVKGSWTVWPIAHAINFRFIPNSQRLLYINSVQIGYNMFLSFLANRN 275
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BLAST of mRNA_L-elsbetiae_contig77.16638.1 vs. uniprot
Match: A0A6T7UAW2_9EUKA (Hypothetical protein n=1 Tax=Phaeocystis antarctica TaxID=33657 RepID=A0A6T7UAW2_9EUKA)

HSP 1 Score: 233 bits (593), Expect = 1.260e-67
Identity = 111/194 (57.22%), Postives = 139/194 (71.65%), Query Frame = 1 
Query:  304 PLGASASSEGDGDKKKAAGLGILWMAYNSLLESQPLLAKSLTSMTGFALGDVLAQKFIDKKEEFDYTRLMKLASFGALVHGSTGHFFYNFLDAKLPGATVMTVVKKVFTDQVLWNPIFGCMFFGYMGAVDGLGPAAISDKIKNNLWTSVRGSWSVWPIAHAINFRWVPTPQRMLYINTIQIFYNCFLSVIAQRE 885
            P    A  + +GD    +    +W AYNS LES PL+ K LTS TGF LGD++AQ  I K + FD+ RL +L+SFG  VHGST HFFYNFLD K+PG +  +V  KVF DQV+WNPIFG MFF Y+ A++G GP  + +K+K  L TSV GSW VWPIAH INFR++P+ QR+LYIN+IQI YNCFLSVI+ R+
Sbjct:  104 PAKEPAGDDSNGDNPLVS----IWKAYNSKLESDPLIMKMLTSFTGFLLGDLIAQTCITKGD-FDWFRLARLSSFGFFVHGSTSHFFYNFLDGKIPGKSAASVASKVFIDQVIWNPIFGVMFFSYVAALEGKGPEYVVNKVKKELLTSVTGSWKVWPIAHTINFRFIPSSQRVLYINSIQIGYNCFLSVISSRD 292
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BLAST of mRNA_L-elsbetiae_contig77.16638.1 vs. uniprot
Match: A0A7S3AZ01_9EUKA (Hypothetical protein n=1 Tax=Haptolina ericina TaxID=156174 RepID=A0A7S3AZ01_9EUKA)

HSP 1 Score: 232 bits (591), Expect = 1.860e-67
Identity = 108/188 (57.45%), Postives = 137/188 (72.87%), Query Frame = 1 
Query:  322 SSEGDGDKKKAAGLGILWMAYNSLLESQPLLAKSLTSMTGFALGDVLAQKFIDKKEEFDYTRLMKLASFGALVHGSTGHFFYNFLDAKLPGATVMTVVKKVFTDQVLWNPIFGCMFFGYMGAVDGLGPAAISDKIKNNLWTSVRGSWSVWPIAHAINFRWVPTPQRMLYINTIQIFYNCFLSVIAQRE 885
            S +GD D   A     +W  Y+ +L+ QPLL K+LTS TGFALGD+LAQ FI K   FD+ RL++L+SFG LVHG++ H+FY FLD K+PG +   V  KVF DQVLWNPIFG MFF Y+ A +  G   + DK++N L T V GSW VWP+AHAINFR++P+ QR+LYIN+IQI YNCFLS+I+ RE
Sbjct:   95 SDDGDKDDFMAG----MWKGYSKMLDEQPLLTKALTSFTGFALGDILAQLFIQKTNPFDWARLLRLSSFGFLVHGTSSHWFYGFLDGKIPGKSAQVVFSKVFIDQVLWNPIFGIMFFSYVAAFELKGFDYVKDKVQNELLTQVTGSWKVWPLAHAINFRFIPSSQRVLYINSIQIGYNCFLSLISNRE 278
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BLAST of mRNA_L-elsbetiae_contig77.16638.1 vs. uniprot
Match: F0YKE1_AURAN (Uncharacterized protein (Fragment) n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YKE1_AURAN)

HSP 1 Score: 223 bits (568), Expect = 1.030e-65
Identity = 104/168 (61.90%), Postives = 124/168 (73.81%), Query Frame = 1 
Query:  370 LWMAYNSLLESQPLLAKSLTSMTGFALGDVLAQKFIDKKEEFDYTRLMKLASFGALVHGSTGHFFYNFLDAKLPGATVMTVVKKVFTDQVLWNPIFGCMFFGYMGAVDGLGPAAISDKIKNNLWTSVRGSWSVWPIAHAINFRWVPTPQRMLYINTIQIFYNCFLSVI 873
            +W AY + LE  PLL K LTSM GF LGDVLAQ FI+K +++D  R ++ +SFG LVHG+T H+FY  LD K+PG     V  KV  DQVLWNPIFG MFFGYMG  +G G      KIKN+L T V GSW+VWPIAHAINF+++P  QR+LYINTIQIFYNCFLS+I
Sbjct:    1 VWAAYEAALEKDPLLIKGLTSMIGFFLGDVLAQCFIEKSDKYDIWRTIRFSSFGLLVHGTTSHWFYGKLDGKIPGTGAGAVASKVGIDQVLWNPIFGIMFFGYMGIFEGSGVGGTITKIKNDLLTQVTGSWTVWPIAHAINFKFIPNSQRVLYINTIQIFYNCFLSII 168
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BLAST of mRNA_L-elsbetiae_contig77.16638.1 vs. uniprot
Match: A0A7S2RA66_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2RA66_9STRA)

HSP 1 Score: 224 bits (570), Expect = 1.090e-65
Identity = 105/174 (60.34%), Postives = 128/174 (73.56%), Query Frame = 1 
Query:  373 WMAYNSLLESQPLLAKSLTSMTGFALGDVLAQKFIDKKEEFDYTRLMKLASFGALVHGSTGHFFYNFLDAKLPGATVMTVVKKVFTDQVLWNPIFGCMFFGYMGAVDGLGPAAISDKIKNNLWTSVRGSWSVWPIAHAINFRWVPTPQRMLYINTIQIFYNCFLSVIAQRE*TD 894
            W AYN LLE+QPLL K+LTSMTGF LGDVLAQ F+DKKE++D  R ++L SFG LVHG+TGH+FY FLD+KLPG   +TV  KV  DQV WNP FG MFF Y+G  +G   A I  KIK +L T+V GSW+VW  AH INF ++P  QR+LYIN+IQI YN FLS +  ++  D
Sbjct:   14 WAAYNRLLETQPLLTKALTSMTGFTLGDVLAQNFVDKKEKYDVMRTVRLGSFGLLVHGTTGHYFYGFLDSKLPGTKPVTVASKVLIDQVFWNPCFGIMFFTYLGLAEGKSFADIMKKIKADLKTAVMGSWAVWVPAHTINFAFIPPSQRLLYINSIQIGYNIFLSFLGNKKVDD 187
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BLAST of mRNA_L-elsbetiae_contig77.16638.1 vs. uniprot
Match: A0A7S2G6J1_9EUKA (Hypothetical protein n=1 Tax=Haptolina brevifila TaxID=156173 RepID=A0A7S2G6J1_9EUKA)

HSP 1 Score: 227 bits (578), Expect = 1.380e-65
Identity = 107/191 (56.02%), Postives = 136/191 (71.20%), Query Frame = 1 
Query:  313 ASASSEGDGDKKKAAGLGILWMAYNSLLESQPLLAKSLTSMTGFALGDVLAQKFIDKKEEFDYTRLMKLASFGALVHGSTGHFFYNFLDAKLPGATVMTVVKKVFTDQVLWNPIFGCMFFGYMGAVDGLGPAAISDKIKNNLWTSVRGSWSVWPIAHAINFRWVPTPQRMLYINTIQIFYNCFLSVIAQRE 885
            A   S+GD +  +AA     W  Y  LL+++PLL K+LTS  GFALGD+LAQKFI K + FD+ RL +LASFG LVHG+T H+FY +LD K+PG +   V  KVF DQVLWNP FG MFF Y+  ++  G + + DK K  L T V GSW VWP+AH INFR++P+ QR+LYINTIQI YNCFLS+I+ R+
Sbjct:   95 APEESDGDENPFQAA-----WKQYEELLDAKPLLMKALTSFVGFALGDILAQKFIQKCDPFDWFRLFRLASFGFLVHGTTSHYFYGWLDGKIPGTSAKVVFSKVFIDQVLWNPCFGVMFFSYVALLEAKGISYVIDKTKTELLTQVTGSWKVWPLAHTINFRFIPSSQRVLYINTIQIGYNCFLSMISNRD 280
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig77.16638.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G6E5_ECTSI3.290e-14578.52Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A835Z9Q4_9STRA7.360e-8658.80Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A7S2FYX3_9STRA5.760e-7362.18Hypothetical protein n=1 Tax=Florenciella parvula ... [more]
A0A7S2XWX9_9STRA9.480e-7056.06Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
W7U673_9STRA2.030e-6958.70Mpv17-like protein n=2 Tax=Monodopsidaceae TaxID=4... [more]
A0A6T7UAW2_9EUKA1.260e-6757.22Hypothetical protein n=1 Tax=Phaeocystis antarctic... [more]
A0A7S3AZ01_9EUKA1.860e-6757.45Hypothetical protein n=1 Tax=Haptolina ericina Tax... [more]
F0YKE1_AURAN1.030e-6561.90Uncharacterized protein (Fragment) n=1 Tax=Aureoco... [more]
A0A7S2RA66_9STRA1.090e-6560.34Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A7S2G6J1_9EUKA1.380e-6556.02Hypothetical protein n=1 Tax=Haptolina brevifila T... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig77contigL-elsbetiae_contig77:48915..53509 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score440.3
Seed ortholog evalue7.3e-121
Seed eggNOG ortholog2880.D7G6E5
KEGG koko:K13348
KEGG Pathwayko04146,map04146
Hectar predicted targeting categorychloroplast
EggNOG free text desc.Belongs to the peroxisomal membrane protein PXMP2 4 family
EggNOG OGsKOG1944@1,KOG1944@2759
COG Functional cat.C
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001
Ec32 ortholog descriptionconserved unknown protein
Ec32 orthologEc-10_001560.1
Exons5
Model size2035
Cds size888
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig77.16638.1prot_L-elsbetiae_contig77.16638.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig77 50062..53509 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816855.5418375-UTR-L-elsbetiae_contig77:48914..500611622816855.5418375-UTR-L-elsbetiae_contig77:48914..50061Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig77 48915..50061 -
1691683864.432279-UTR-L-elsbetiae_contig77:48914..500611691683864.432279-UTR-L-elsbetiae_contig77:48914..50061Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig77 48915..50061 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816855.554758-CDS-L-elsbetiae_contig77:50061..502021622816855.554758-CDS-L-elsbetiae_contig77:50061..50202Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig77 50062..50202 -
1691683864.4556904-CDS-L-elsbetiae_contig77:50061..502021691683864.4556904-CDS-L-elsbetiae_contig77:50061..50202Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig77 50062..50202 -
1622816855.568301-CDS-L-elsbetiae_contig77:50966..510771622816855.568301-CDS-L-elsbetiae_contig77:50966..51077Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig77 50967..51077 -
1691683864.467994-CDS-L-elsbetiae_contig77:50966..510771691683864.467994-CDS-L-elsbetiae_contig77:50966..51077Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig77 50967..51077 -
1622816855.5781202-CDS-L-elsbetiae_contig77:51363..515131622816855.5781202-CDS-L-elsbetiae_contig77:51363..51513Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig77 51364..51513 -
1691683864.4787173-CDS-L-elsbetiae_contig77:51363..515131691683864.4787173-CDS-L-elsbetiae_contig77:51363..51513Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig77 51364..51513 -
1622816855.5881655-CDS-L-elsbetiae_contig77:52580..528121622816855.5881655-CDS-L-elsbetiae_contig77:52580..52812Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig77 52581..52812 -
1691683864.4895322-CDS-L-elsbetiae_contig77:52580..528121691683864.4895322-CDS-L-elsbetiae_contig77:52580..52812Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig77 52581..52812 -
1622816855.5979683-CDS-L-elsbetiae_contig77:53255..535091622816855.5979683-CDS-L-elsbetiae_contig77:53255..53509Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig77 53256..53509 -
1691683864.5022388-CDS-L-elsbetiae_contig77:53255..535091691683864.5022388-CDS-L-elsbetiae_contig77:53255..53509Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig77 53256..53509 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig77.16638.1

>prot_L-elsbetiae_contig77.16638.1 ID=prot_L-elsbetiae_contig77.16638.1|Name=mRNA_L-elsbetiae_contig77.16638.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=296bp
MKFATALVGAGALCASTDAFVPAAVPAGSRFVPQSSALASSVSAVPGRSG
DVMMSLGGGGSKRGGGPKSVSSKITNIFRGTSKKGGSNGGGVNGGGDGKV
PPLGASASSEGDGDKKKAAGLGILWMAYNSLLESQPLLAKSLTSMTGFAL
GDVLAQKFIDKKEEFDYTRLMKLASFGALVHGSTGHFFYNFLDAKLPGAT
VMTVVKKVFTDQVLWNPIFGCMFFGYMGAVDGLGPAAISDKIKNNLWTSV
RGSWSVWPIAHAINFRWVPTPQRMLYINTIQIFYNCFLSVIAQRE*
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mRNA from alignment at L-elsbetiae_contig77:48915..53509-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig77.16638.1 ID=mRNA_L-elsbetiae_contig77.16638.1|Name=mRNA_L-elsbetiae_contig77.16638.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=4595bp|location=Sequence derived from alignment at L-elsbetiae_contig77:48915..53509- (Laminarionema elsbetiae ELsaHSoW15)
ATGAAGTTCGCCACTGCTCTCGTGGGTGCGGGAGCGCTCTGCGCCAGCAC
GGATGCTTTTGTCCCTGCGGCTGTACCAGCCGGCAGCAGGTTCGTTCCCC
AAAGCTCCGCCCTCGCGTCGTCGGTCTCGGCTGTGCCAGGACGCAGCGGC
GATGTGATGATGAGCCTGGGTGGTGGAGGCTCCAAAAGGGGAGGAGGACC
TAAGAGCGTGTCATCGAAGATCACCAACATCTTCCGAGGGACCAGCAAGA
AGGGGTAAGCGAGAAATCCTTGACGTTGCCGACTTCAATCTTAAAAAAAA
ACGAAGACAAGCCGCAGTTCGGCTGTTGGCGGTCAGGCGGTAGGCGCGCC
GCTGTCTACACAGCTGACGTCGGCCAATCTCTCGGCCTCCGTCGGCTACT
TGGTTTCAGTTGATGCTGTGGTTGACTGGATGCAAACCGTGTGCTCGAGG
CGTTGCTGTTGCCCCCCTCAGCCCTTCCGAACCGGCCCAACGCGTACATT
CGAAAATGGAAGATTTTTTTAAGTTCTTGTGAACCTCTTGGTGTACACTA
TCTCCCTCGAACCGAAAGCCGGGGTCGTTCATGCAATCGAAGCTCGTTAC
TTTTGTCCTCCACATTGTCCACGACTTGACTCGTTTGCCCTTATCTCCTG
TTGGCACCGCTCGCCCTCCCCGCTTTTTCCGTCGTGAACCTTCAAAGGGG
CTCAAACGGCGGGGGTGTAAACGGCGGCGGGGATGGCAAGGTGCCCCCGC
TCGGCGCGTCTGCCTCTTCTGAGGGCGACGGAGACAAGAAGAAAGCGGCT
GGGCTGGGCATCTTGTGGATGGCATACAACAGCCTGTTGGAATCGCAGCC
TCTCCTCGCCAAGTCCCTCACCTCCATGACCGGGTTCGCGCTGGGAGACG
TGCTGGCCCAGAAGTTTATCGACAAGAAGGTGGGCAGGCATTGATCGATC
GCGAGACACACGAACATGTTCATCGCACCGCACCTCTTCTCTACAGGCAC
AAAAGTTGCTCTTTGTAAAAACTAGCCGCCACCGCGGCGGTTTAACACTT
GTTTGGATGTTTCGGCGAAGTACATCATCGGTGCTGGCTGCCGGTCTGCA
GGCAGCTCGTCGATGTACACCCACGCTAATGCACAATTGTGGGACATGTT
TGGTGCACGTGCATACCAGGAGCACGGCGGTGCAAGAGGCGTATTGCCTG
TTTCCGCTTCGTACTCTCAAGTGATGCCAGCATGTAGACTGCTGTTGTAC
AGCTTGGGGTCGATATTACGATATTACCATGTAGATATGAGAGTTATCGA
CCGGCCGGAGGACTCTGCTTGGTGGTCGTCTGTGTACTACTGTGTAGGCG
TGCTTCGTACTCTTGAGCTGTATATACAACAAGTACACAGCAGGGTTAAA
AGTAAATCAGCGAATCAAAAATGGAACCTAGCCCACATGAGAGCCAAAAC
TCGATATTGTACGAAGCTCGCGCTCAATGCATCACACAAACCTCCTCTCA
TACAAGCCACAGGTACCGCTGCTGTTTTGTGCTTTCCTCTCTATCGGCAC
GTTTGTATGTTTGTATGGTGATGGATACATACATATGTGTACATTTATAC
CGCACGCGACCGAGAAGAGAACACTCATACATAATTAGTCCTACCTTTGA
TGCCAGTCCAAGCACGTTGCACCTTGCTTGTGGTCACACCAGCCTTCCGT
GGCACATGGTAAGGGCTGCGTGTATTTGTATGCATGTGTGAGATGTGTGC
GCAAGCCTTCGAAGCTGTCGTGCTGCCCAGTGCTATCCGAAAGCATCCGT
AGATTCATTGCTTGTCGCCGTTTTCACTTGGAAGATCTTCTTGCCGACGC
GCGTATGTTTTTCTTTTTTTTCTCGCGGATTTAAGATCCATGCACCAGTA
GTCAATGGCCTGAGACGCGGTATAACCAGCATGCTTTTTTCAACGGTGAA
ATATTGCACTCACTCTCAGCGTGACGTTGCATTTCTCGTGAAACAGGAAG
AATTCGACTACACCCGCCTCATGAAGCTAGCGTCTTTCGGCGCCTTGGTG
CACGGCTCCACCGGGCACTTCTTCTACAACTTCCTCGACGCCAAGTTGCC
CGGCGCTACGGTTATGACCGTCGTGAAGAAGGTCTTCACCGACCAGGTCT
GTGTCTTATCAGTCAACTCTCACTCGCTTCCATCTCTTTTTTTCTTGGCG
CTTACTTTTTGCTCAGAGACATACACAGATTTGCGCTGTTTTCTTGAACT
CGGTTCTCGACATCAACGCAGAGAAGGCGGTGCGGTGCGGTGCATCTCTC
TCAGATGTCACGGTATTTTTACCTCTGCCCGTTGTTTCTCTGTGGGCAAG
CGGGTGTTTCTAGTTTCGTGGATGCCTCGGCTCTCCTCTTCTCAACGCCA
CTTCACACCCCGCCTCCACCTCCCTCTGGCAGGTCCTTTGGAACCCTATC
TTTGGATGCATGTTCTTCGGTTACATGGGAGCGGTGGATGGCTTGGGCCC
TGCCGCTATCTCGGACAAAATTAAGAACAACCTGTGGACGTCGGTGAGTA
TATTGGTGTCTTTGGGTTGTGTGCCCCTGTTGGACCGCACGTTCGCTGCC
CGAAGGGCCTTCCCAACCCCACCCAGCTGTTAGGCTGTATTGGCGCACGT
GATATCTCACATGGACAAATATTGCTCGCGGCGTTTGGTTTGTAGAAAAG
GGTGGGGATGTCGGCGCCTGGAACAATCGTTTGGGGTAAACACAGCGTCA
CAGGGGGGAAAAAAGGCTTGCCTGAGAGTGAAGAAGCTCGCCTGATAACG
ATGTTTTTCGGACATTTCTCGCCGTTTTCACCCACAACCCTGTCTGGGCC
GTCATGTAAGGCAAAAATGTGCCATTGCCGGTGTAGACAGAAGTTGCCAT
TTGTTTTTTCATTACGTGAGGTTTAGGTCTGCTGCGTGTTTTTTATCCAA
CCCTCTATGAAGGAACATGTTCCCCTTGATACGAACGCCAACGAGGGAAT
TGTTGCCTCTGGTCTGCTCTGTTTATGTTCTGTGTGTGACCACCTCGTCT
CCCTTTCTCCGCCCAATGGTCCCAAGGTTTCCTACAAAAAGCGTTCAATT
TTTGGTTTTCTTAAACAATAACATGAAACGGTAAAACTAAAACCCATCGT
GACTCGATCAGAGCGAGCGCGAGTGACCGCCGCTTCTGTAACATCGTCAT
TCCTCTTAAACCAAACGCCTAGCTTGTATCCGCTGCTCTGCATTCGATGT
CCGGCATGTTCTCATTTTACTCCCTGCACTGCCTGTCTCTCCCCTCTTAC
CTCTCAGGTCAGGGGATCGTGGAGCGTATGGCCCATTGCGCACGCCATCA
ACTTCCGCTGGGTCCCCACCCCGCAGCGGATGCTTTACATCAACACCATC
CAGATCTTTTACAACTGCTTCCTGAGCGTCATCGCGCAGCGGGAGTAAAC
CGATGCCTTTTCTGTTCTGCGGGGCGCGGTGTTTTTGATCGCTTGATTGG
GCCAGTTGCTTCGTTCACAGCGTGTCTTTATCGATAGAGAAAGTAGAGAG
GCGGGGAAGTTTGGCAATTTGGCACTCCTTTCCTGTCATGCCTATTTTTA
CCCGGCGTGTTGTTGTTTGCCCTCCGCACTCTTTCCATAATTTTTTATCG
TGGCAAGCGCAGAGAAGCCAGTGGAAGGGCGCTCTGGAGACCTTTGATGC
ACGTTTCCCCAGCACCGCACAGGTGGTCAGTTTAGTTTCGCGCCTGCCGT
TGATTTAAGTAGAGCACGGTTGCACATGCGTGCTACAGTTTTAAGACGAG
GTTGCCCGAAGCGGGAGGCATGCTCTTCACTTTGTCGGTTTCTTCTGTTT
TCCCTGACGTTTTGGGGTTTGAATCTCGGGAAAAGACAGTAGTTAGTGCT
CACCCGTTATGGTGATTCGTTGTACTTTGTCTTGTTTGGTTTGGTGAGGG
TGTGGCCAACACGCGGGTGGGAATGCTGGCCCAGCCGGTGGAGAACCAAT
TCGGGGGCGCGTGGCATGAGATGAGGCCTCCACACACAACGTTGTGTATT
TATTACGGAGTGAATTTAACACGCCAGGAAACAAAATTCGAGTACTCCAA
GAGAGAGAGCTTTAACCCCTTTGCAACGCCAAGAAATATTTATTTCATTG
CAAGGCTGTGATAAGATCTTACTCGCAGTCCCTGATGCAGACTCCTTGTC
TATAATCCCTATCATTTGGCCCCAAATCGATTTCGGGGCCAAATGATATA
CCTTTATGGGGCACCCGTTCTAAACTGGGGTCGAAAAGTTTGTTTTATGA
CTTGGGGACTTGGGGCCATAATGTGGTCCTAAAGGGGTTAAGGAAAAAAT
GGAGTGTTTTGGTGGCAATGATATCGATTCCTTTCCTCAAAAGGCGAACA
CCTGTCTGAAGAGCTACGCGCAAGAGCTGTGAAATGGGCAAAGCATAAAC
GCCGCCTATCCAACAGTAGTTCAGACAGCGGGTAGTTCCCCAGCAGGCAC
GTGTAGCCTTTGCCCTGCTCTTGCGGCAGTGAACGCACCAAACTTCTTCC
ATGATCTGGCTTACCGTGTATGGTAGTCACCTGTGGTGATCGAAG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig77:48915..53509-

>mRNA_L-elsbetiae_contig77.16638.1 ID=mRNA_L-elsbetiae_contig77.16638.1|Name=mRNA_L-elsbetiae_contig77.16638.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1776bp|location=Sequence derived from alignment at L-elsbetiae_contig77:48915..53509- (Laminarionema elsbetiae ELsaHSoW15)
ATGAAGTTCGCCACTGCTCTCGTGGGTGCGGGAGCGCTCTGCGCCAGCAC
GGATGCTTTTGTCCCTGCGGCTGTACCAGCCGGCAGCAGGTTCGTTCCCC
AAAGCTCCGCCCTCGCGTCGTCGGTCTCGGCTGTGCCAGGACGCAGCGGC
GATGTGATGATGAGCCTGGGTGGTGGAGGCTCCAAAAGGGGAGGAGGACC
TAAGAGCGTGTCATCGAAGATCACCAACATCTTCCGAGGGACCAGCAAGA
AGGGATGAAGTTCGCCACTGCTCTCGTGGGTGCGGGAGCGCTCTGCGCCA
GCACGGATGCTTTTGTCCCTGCGGCTGTACCAGCCGGCAGCAGGTTCGTT
CCCCAAAGCTCCGCCCTCGCGTCGTCGGTCTCGGCTGTGCCAGGACGCAG
CGGCGATGTGATGATGAGCCTGGGTGGTGGAGGCTCCAAAAGGGGAGGAG
GACCTAAGAGCGTGTCATCGAAGATCACCAACATCTTCCGAGGGACCAGC
AAGAAGGGGGGCTCAAACGGCGGGGGTGTAAACGGCGGCGGGGATGGCAA
GGTGCCCCCGCTCGGCGCGTCTGCCTCTTCTGAGGGCGACGGAGACAAGA
AGAAAGCGGCTGGGCTGGGCATCTTGTGGATGGCATACAACAGCCTGTTG
GAATCGCAGCCTCTCCTCGCCAAGTCCCTCACCTCCATGACCGGGTTCGC
GCTGGGAGACGTGCTGGCCCAGAAGTTTATCGACAAGAAGGGGCTCAAAC
GGCGGGGGTGTAAACGGCGGCGGGGATGGCAAGGTGCCCCCGCTCGGCGC
GTCTGCCTCTTCTGAGGGCGACGGAGACAAGAAGAAAGCGGCTGGGCTGG
GCATCTTGTGGATGGCATACAACAGCCTGTTGGAATCGCAGCCTCTCCTC
GCCAAGTCCCTCACCTCCATGACCGGGTTCGCGCTGGGAGACGTGCTGGC
CCAGAAGTTTATCGACAAGAAGGAAGAATTCGACTACACCCGCCTCATGA
AGCTAGCGTCTTTCGGCGCCTTGGTGCACGGCTCCACCGGGCACTTCTTC
TACAACTTCCTCGACGCCAAGTTGCCCGGCGCTACGGTTATGACCGTCGT
GAAGAAGGTCTTCACCGACCAGGAAGAATTCGACTACACCCGCCTCATGA
AGCTAGCGTCTTTCGGCGCCTTGGTGCACGGCTCCACCGGGCACTTCTTC
TACAACTTCCTCGACGCCAAGTTGCCCGGCGCTACGGTTATGACCGTCGT
GAAGAAGGTCTTCACCGACCAGGTCCTTTGGAACCCTATCTTTGGATGCA
TGTTCTTCGGTTACATGGGAGCGGTGGATGGCTTGGGCCCTGCCGCTATC
TCGGACAAAATTAAGAACAACCTGTGGACGTCGGTCCTTTGGAACCCTAT
CTTTGGATGCATGTTCTTCGGTTACATGGGAGCGGTGGATGGCTTGGGCC
CTGCCGCTATCTCGGACAAAATTAAGAACAACCTGTGGACGTCGGTCAGG
GGATCGTGGAGCGTATGGCCCATTGCGCACGCCATCAACTTCCGCTGGGT
CCCCACCCCGCAGCGGATGCTTTACATCAACACCATCCAGATCTTTTACA
ACTGCTTCCTGAGCGTCATCGCGCAGCGGGAGTAAGTCAGGGGATCGTGG
AGCGTATGGCCCATTGCGCACGCCATCAACTTCCGCTGGGTCCCCACCCC
GCAGCGGATGCTTTACATCAACACCATCCAGATCTTTTACAACTGCTTCC
TGAGCGTCATCGCGCAGCGGGAGTAA
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