mRNA_L-elsbetiae_contig7681.16618.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig7681.16618.1
Unique NamemRNA_L-elsbetiae_contig7681.16618.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig7681.16618.1 vs. uniprot
Match: A0A6H5KXZ2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KXZ2_9PHAE)

HSP 1 Score: 83.2 bits (204), Expect = 2.020e-13
Identity = 102/234 (43.59%), Postives = 107/234 (45.73%), Query Frame = 1 
Query:  412 PAAKQARGLYGRVSGLVGRAVNLLTPGRPRRATPAAPAAADMGGDDDLEAGRGTTAAVGVEGXXXXXXXXXEPVAARPAVDPAVAG------------------DPPSRKLGVDAVDGDXXXXXXXXXXXXXFSPGVGXXXXXXXXXRARR-ARVGGNGGA----------TPSSRRISGDGLAPASLRGSTAGDGA----AEEFGLPPVPPFYPRQGGGASPPAGGXXAGARG 1014
            P AKQ RGLY RV+GLVGRAV LLTPGRPR     A  AA+   D+DLEA  G  AA G E XXXXXXXXX                                  P SR  GVD                  FSPGVG           R  A VG  G A          + S+RR SGDGL   SLRGSTAGDG     AEE GLPPVPPFY    G ASP   G   G  G
Sbjct:   39 PPAKQPRGLYRRVTGLVGRAVGLLTPGRPRAPPRIASTAAE---DNDLEAAAGA-AARGEESXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSPSSRHGGVDG--------GANLTKAAFFSPGVGQRREGLRRQTRRGGAGVGTKGNAISKLPSSLRLSSSARRASGDGLGSTSLRGSTAGDGXXXXXAEELGLPPVPPFYKL--GAASPAPAGRVGGDEG 258
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig7681.16618.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5KXZ2_9PHAE2.020e-1343.59Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig7681contigL-elsbetiae_contig7681:5890..7637 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size1171
Cds size1170
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816853.392781-CDS-L-elsbetiae_contig7681:5889..59341622816853.392781-CDS-L-elsbetiae_contig7681:5889..5934Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7681 5890..5934 +
1691683862.787193-CDS-L-elsbetiae_contig7681:5889..59341691683862.787193-CDS-L-elsbetiae_contig7681:5889..5934Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7681 5890..5934 +
1622816853.405317-CDS-L-elsbetiae_contig7681:6512..76371622816853.405317-CDS-L-elsbetiae_contig7681:6512..7637Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7681 6513..7637 +
1691683862.8067172-CDS-L-elsbetiae_contig7681:6512..76371691683862.8067172-CDS-L-elsbetiae_contig7681:6512..7637Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7681 6513..7637 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig7681.16618.1prot_L-elsbetiae_contig7681.16618.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig7681 5890..7637 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig7681.16618.1

>prot_L-elsbetiae_contig7681.16618.1 ID=prot_L-elsbetiae_contig7681.16618.1|Name=mRNA_L-elsbetiae_contig7681.16618.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=390bp
SLSTLRQEERTRGEECSSQGRGRRRPSARASERQKHWQTPPSATSSTDQT
SMGEGGPASDSDGGTNGSSSLRSKRPLHRQQQQQQQLPETESTAGSKRRR
DGAPEEASAAVEDTQGGGDAAAAAAAAAAVPEDDVAPPAAKQARGLYGRV
SGLVGRAVNLLTPGRPRRATPAAPAAADMGGDDDLEAGRGTTAAVGVEGG
AGGGGREEEPVAARPAVDPAVAGDPPSRKLGVDAVDGDSGAGDHANPPAA
LFSPGVGARRGDGPHRRARRARVGGNGGATPSSRRISGDGLAPASLRGST
AGDGAAEEFGLPPVPPFYPRQGGGASPPAGGGGAGARGRGARPLFLGTGD
GPAGPQSPAGVTIKKSKGKGRGQEGGGGVVDWELQEEEEE
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mRNA from alignment at L-elsbetiae_contig7681:5890..7637+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig7681.16618.1 ID=mRNA_L-elsbetiae_contig7681.16618.1|Name=mRNA_L-elsbetiae_contig7681.16618.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1748bp|location=Sequence derived from alignment at L-elsbetiae_contig7681:5890..7637+ (Laminarionema elsbetiae ELsaHSoW15)
TCACTTTCCACGCTTCGCCAAGAAGAGAGAACGAGAGGGGAAGAGGTATG
TGCATCTTTCCTTGCTCTGCTCGAATAGCGCGTTATTTTCGTGCTCTGCA
CCCAAGTTACCAAATTGTTCCCGTCGGTTGTTAGTTTTTTTTTGCGGCAG
CTCTCTCTCTAGCTGATTTTGAGGCAGAGACCGAGGGACGGGGGAGAGGC
GACCAGGATCTTGAACCATGCTCAGAGAGTATAGATAGGCCTTTAACCGT
GTATTTGGTGTAGATGAGGCTGACCTGTTGTAGTGAAGGGATTTTGGGAG
GCTCAGAAACCGGAGACGTTGTGGTGTGAGACAGAACGCGAAACAGGGGA
GAGTTGGACCCGTCACGCCCCACCGGCCGTGTACAACGCGCGCTTGCGCG
CGCCAACGATTTTGTTCCATCCTCTTGGCCCACCAGCACCAGTCGGCTGT
GCGTTGGTTCTGCGCTGGTTCTGCTCTAGCCATTCTACAGCACCAATGTC
GACTTGCATTGCCCCTGCCCCTACAAGTCCTTGTTACCTACCATGAGTCC
AGAGGCCTATGTAGCCCCATGGTTTCCGTGTCCAACTCACCCTCTCCACG
CCGGGGTGTTCGCCATATGACAGTGCTCTTCGCAGGGCAGAGGAAGGAGA
CGCCCGAGCGCAAGAGCTTCTGAACGCCAGAAGCACTGGCAAACCCCTCC
CTCCGCCACCAGTAGCACCGATCAAACCAGCATGGGCGAGGGAGGGCCCG
CCAGTGACAGCGACGGCGGCACCAACGGCAGCAGCAGCTTGAGAAGCAAG
CGCCCACTGCACCGGCAGCAGCAGCAGCAGCAGCAGTTGCCGGAAACAGA
GTCCACGGCCGGAAGCAAGAGACGCCGCGATGGAGCACCAGAAGAAGCTA
GCGCGGCCGTAGAAGATACGCAGGGCGGTGGGGATGCCGCCGCGGCCGCC
GCCGCCGCCGCCGCCGTTCCCGAGGACGATGTCGCCCCGCCCGCCGCGAA
GCAGGCGCGCGGGCTGTACGGCAGGGTCTCCGGCCTGGTTGGGCGCGCCG
TGAACCTTTTAACCCCGGGGAGACCCCGCAGGGCCACCCCCGCCGCTCCC
GCCGCCGCCGACATGGGAGGCGACGACGATTTAGAAGCAGGAAGAGGGAC
AACAGCAGCGGTCGGAGTGGAAGGCGGAGCAGGGGGAGGAGGAAGAGAAG
AAGAGCCCGTCGCCGCCCGCCCGGCGGTTGACCCGGCCGTTGCCGGAGAC
CCCCCGTCTCGCAAACTCGGTGTCGACGCCGTCGACGGCGACAGCGGTGC
TGGTGATCATGCAAACCCTCCGGCGGCGTTATTTAGCCCGGGAGTAGGAG
CCCGGAGGGGCGACGGACCCCACCGCCGGGCTAGGAGGGCGAGGGTCGGC
GGAAACGGCGGAGCGACGCCGTCGTCTCGCCGGATCTCCGGAGACGGGCT
TGCCCCCGCGTCGCTCCGGGGGAGCACGGCGGGAGATGGGGCGGCAGAAG
AGTTCGGCTTGCCCCCCGTTCCCCCGTTTTACCCACGACAGGGAGGAGGG
GCGTCCCCGCCGGCCGGCGGCGGCGGCGCCGGCGCGAGGGGCAGAGGAGC
AAGGCCGCTCTTCCTCGGCACTGGTGACGGTCCAGCGGGTCCTCAGTCTC
CTGCCGGGGTCACGATAAAGAAAAGCAAGGGGAAAGGGAGAGGACAGGAG
GGAGGCGGCGGTGTGGTCGACTGGGAGCTGCAGGAGGAAGAAGAGGAG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig7681:5890..7637+

>mRNA_L-elsbetiae_contig7681.16618.1 ID=mRNA_L-elsbetiae_contig7681.16618.1|Name=mRNA_L-elsbetiae_contig7681.16618.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=2340bp|location=Sequence derived from alignment at L-elsbetiae_contig7681:5890..7637+ (Laminarionema elsbetiae ELsaHSoW15)
TCACTTTCCACGCTTCGCCAAGAAGAGAGAACGAGAGGGGAAGAGTCACT
TTCCACGCTTCGCCAAGAAGAGAGAACGAGAGGGGAAGAGTGCTCTTCGC
AGGGCAGAGGAAGGAGACGCCCGAGCGCAAGAGCTTCTGAACGCCAGAAG
CACTGGCAAACCCCTCCCTCCGCCACCAGTAGCACCGATCAAACCAGCAT
GGGCGAGGGAGGGCCCGCCAGTGACAGCGACGGCGGCACCAACGGCAGCA
GCAGCTTGAGAAGCAAGCGCCCACTGCACCGGCAGCAGCAGCAGCAGCAG
CAGTTGCCGGAAACAGAGTCCACGGCCGGAAGCAAGAGACGCCGCGATGG
AGCACCAGAAGAAGCTAGCGCGGCCGTAGAAGATACGCAGGGCGGTGGGG
ATGCCGCCGCGGCCGCCGCCGCCGCCGCCGCCGTTCCCGAGGACGATGTC
GCCCCGCCCGCCGCGAAGCAGGCGCGCGGGCTGTACGGCAGGGTCTCCGG
CCTGGTTGGGCGCGCCGTGAACCTTTTAACCCCGGGGAGACCCCGCAGGG
CCACCCCCGCCGCTCCCGCCGCCGCCGACATGGGAGGCGACGACGATTTA
GAAGCAGGAAGAGGGACAACAGCAGCGGTCGGAGTGGAAGGCGGAGCAGG
GGGAGGAGGAAGAGAAGAAGAGCCCGTCGCCGCCCGCCCGGCGGTTGACC
CGGCCGTTGCCGGAGACCCCCCGTCTCGCAAACTCGGTGTCGACGCCGTC
GACGGCGACAGCGGTGCTGGTGATCATGCAAACCCTCCGGCGGCGTTATT
TAGCCCGGGAGTAGGAGCCCGGAGGGGCGACGGACCCCACCGCCGGGCTA
GGAGGGCGAGGGTCGGCGGAAACGGCGGAGCGACGCCGTCGTCTCGCCGG
ATCTCCGGAGACGGGCTTGCCCCCGCGTCGCTCCGGGGGAGCACGGCGGG
AGATGGGGCGGCAGAAGAGTTCGGCTTGCCCCCCGTTCCCCCGTTTTACC
CACGACAGGGAGGAGGGGCGTCCCCGCCGGCCGGCGGCGGCGGCGCCGGC
GCGAGGGGCAGAGGAGCAAGGCCGCTCTTCCTCGGCACTGGTGACGGTCC
AGCGGGTCCTCAGTCTCCTGCCGGGGTCACGATAAAGAAAAGCAAGGGGA
AAGGGAGAGGACAGGAGGGAGGCGGCGGTGTGGTCGACTGGGAGCTGCAG
GAGGAAGAAGAGGAGTGCTCTTCGCAGGGCAGAGGAAGGAGACGCCCGAG
CGCAAGAGCTTCTGAACGCCAGAAGCACTGGCAAACCCCTCCCTCCGCCA
CCAGTAGCACCGATCAAACCAGCATGGGCGAGGGAGGGCCCGCCAGTGAC
AGCGACGGCGGCACCAACGGCAGCAGCAGCTTGAGAAGCAAGCGCCCACT
GCACCGGCAGCAGCAGCAGCAGCAGCAGTTGCCGGAAACAGAGTCCACGG
CCGGAAGCAAGAGACGCCGCGATGGAGCACCAGAAGAAGCTAGCGCGGCC
GTAGAAGATACGCAGGGCGGTGGGGATGCCGCCGCGGCCGCCGCCGCCGC
CGCCGCCGTTCCCGAGGACGATGTCGCCCCGCCCGCCGCGAAGCAGGCGC
GCGGGCTGTACGGCAGGGTCTCCGGCCTGGTTGGGCGCGCCGTGAACCTT
TTAACCCCGGGGAGACCCCGCAGGGCCACCCCCGCCGCTCCCGCCGCCGC
CGACATGGGAGGCGACGACGATTTAGAAGCAGGAAGAGGGACAACAGCAG
CGGTCGGAGTGGAAGGCGGAGCAGGGGGAGGAGGAAGAGAAGAAGAGCCC
GTCGCCGCCCGCCCGGCGGTTGACCCGGCCGTTGCCGGAGACCCCCCGTC
TCGCAAACTCGGTGTCGACGCCGTCGACGGCGACAGCGGTGCTGGTGATC
ATGCAAACCCTCCGGCGGCGTTATTTAGCCCGGGAGTAGGAGCCCGGAGG
GGCGACGGACCCCACCGCCGGGCTAGGAGGGCGAGGGTCGGCGGAAACGG
CGGAGCGACGCCGTCGTCTCGCCGGATCTCCGGAGACGGGCTTGCCCCCG
CGTCGCTCCGGGGGAGCACGGCGGGAGATGGGGCGGCAGAAGAGTTCGGC
TTGCCCCCCGTTCCCCCGTTTTACCCACGACAGGGAGGAGGGGCGTCCCC
GCCGGCCGGCGGCGGCGGCGCCGGCGCGAGGGGCAGAGGAGCAAGGCCGC
TCTTCCTCGGCACTGGTGACGGTCCAGCGGGTCCTCAGTCTCCTGCCGGG
GTCACGATAAAGAAAAGCAAGGGGAAAGGGAGAGGACAGGAGGGAGGCGG
CGGTGTGGTCGACTGGGAGCTGCAGGAGGAAGAAGAGGAG
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