mRNA_L-elsbetiae_contig767.16602.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig767.16602.1
Unique NamemRNA_L-elsbetiae_contig767.16602.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig767.16602.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig767contigL-elsbetiae_contig767:11742..12778 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size306
Cds size303
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig767.16602.1prot_L-elsbetiae_contig767.16602.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig767 11742..12776 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816852.2659397-CDS-L-elsbetiae_contig767:11741..119061622816852.2659397-CDS-L-elsbetiae_contig767:11741..11906Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig767 11742..11906 +
1691683862.0011823-CDS-L-elsbetiae_contig767:11741..119061691683862.0011823-CDS-L-elsbetiae_contig767:11741..11906Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig767 11742..11906 +
1622816852.2785935-CDS-L-elsbetiae_contig767:12261..123751622816852.2785935-CDS-L-elsbetiae_contig767:12261..12375Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig767 12262..12375 +
1691683862.0116286-CDS-L-elsbetiae_contig767:12261..123751691683862.0116286-CDS-L-elsbetiae_contig767:12261..12375Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig767 12262..12375 +
1622816852.2906003-CDS-L-elsbetiae_contig767:12752..127761622816852.2906003-CDS-L-elsbetiae_contig767:12752..12776Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig767 12753..12776 +
1691683862.0224898-CDS-L-elsbetiae_contig767:12752..127761691683862.0224898-CDS-L-elsbetiae_contig767:12752..12776Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig767 12753..12776 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig767.16602.1

>prot_L-elsbetiae_contig767.16602.1 ID=prot_L-elsbetiae_contig767.16602.1|Name=mRNA_L-elsbetiae_contig767.16602.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=101bp
PLGTNRTFVDPGDGSGPALADSCLSCQSGFFGGVESDTSPVPTCRLCPKN
TYSDKVGAVGEGICIPCEAGRFTVADGGSTSAEQCVECGVDFECPLGGER
T
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mRNA from alignment at L-elsbetiae_contig767:11742..12778+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig767.16602.1 ID=mRNA_L-elsbetiae_contig767.16602.1|Name=mRNA_L-elsbetiae_contig767.16602.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1037bp|location=Sequence derived from alignment at L-elsbetiae_contig767:11742..12778+ (Laminarionema elsbetiae ELsaHSoW15)
CCTCTCGGCACAAACCGTACTTTCGTGGACCCGGGCGATGGCTCGGGACC
TGCGCTCGCCGACAGCTGCCTCTCGTGCCAATCAGGTTTCTTTGGAGGCG
TGGAGAGCGACACGTCGCCGGTGCCGACGTGCCGTTTGTGCCCGAAGAAC
ACCTACAGTGACAAGGTTTGGCAATTCTGCGATTCGCGGCAGATGTGTGC
AGTGCATCAGTCGATTTTTGCGGTAGAGCACATCATTGGGTGCTATCGGC
GCGGTCGGTAGGAGTCTCTCTGACCGATAGTTTTCTACGATTCTAGTGTT
GTTCTAGCAGTGGCTGGCATGTGCGTAAACTAAGTTTCGTGCTTCGGGCC
TTACGCTTGCTCGTCTCTCACGCCGTCGCTCTCCAAGCTTGCGAAACGGC
GATTCAAGGTTGTGGATGATACATCCTCCCGTGTAGCACCGCGATAGGAA
GCAACCGACCATGCCCATCGGTTTACCACTTTCGGGCACTAAACAACGCC
CCGCCTTTCTTTGCCGCCAGGTTGGAGCCGTGGGAGAAGGTATCTGTATC
CCGTGTGAGGCGGGACGCTTCACGGTGGCCGACGGCGGAAGTACATCGGC
CGAGCAGTGCGTGGAGTGCGGAGTAGACTTTGAGGTGCGATGATACTTGA
ACGTCTGTGATAGTGCCGCATACCGGCGGATATCTTCGCTTGTGTTACCG
AGCTATGTGTGTTGGCTATCGCACTCGTTACCAATCCTCGTCCGTGTCCC
CAGCAAATAGAACGAACCCCACTGGTAGGTAGCTCGGGCGTGTAGTGGTG
CTGCGAGGGGAGGTTGTGTCCCAGACGCCGAAAGGGGGCGAACCGCTCCT
AAGCTATACCTCATACCACAAAATGCTTTTATCAAAGCTACACGCCGCCC
CGGTCTTCATCCCTGGTGTTCGCATCTCACGCGAGCCCCGTGACACCATG
GCTACATCCTTGTCTTGGTCCCTCCTGCTGTTCACGTGGTTCCGCGTCGT
CACTCGTGCAGTGCCCGCTCGGGGGTGAGAGGACCGC
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Coding sequence (CDS) from alignment at L-elsbetiae_contig767:11742..12778+

>mRNA_L-elsbetiae_contig767.16602.1 ID=mRNA_L-elsbetiae_contig767.16602.1|Name=mRNA_L-elsbetiae_contig767.16602.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=606bp|location=Sequence derived from alignment at L-elsbetiae_contig767:11742..12778+ (Laminarionema elsbetiae ELsaHSoW15)
CCTCTCGGCACAAACCGTACTTTCGTGGACCCGGGCGATGGCTCGGGACC
TGCGCTCGCCGACAGCTGCCTCTCGTGCCAATCAGGTTTCTTTGGAGGCG
TGGAGAGCGACACGTCGCCGGTGCCGACGTGCCGTTTGTGCCCGAAGAAC
ACCTACAGTGACAAGCCTCTCGGCACAAACCGTACTTTCGTGGACCCGGG
CGATGGCTCGGGACCTGCGCTCGCCGACAGCTGCCTCTCGTGCCAATCAG
GTTTCTTTGGAGGCGTGGAGAGCGACACGTCGCCGGTGCCGACGTGCCGT
TTGTGCCCGAAGAACACCTACAGTGACAAGGTTGGAGCCGTGGGAGAAGG
TATCTGTATCCCGTGTGAGGCGGGACGCTTCACGGTGGCCGACGGCGGAA
GTACATCGGCCGAGCAGTGCGTGGAGTGCGGAGTAGACTTTGAGGTTGGA
GCCGTGGGAGAAGGTATCTGTATCCCGTGTGAGGCGGGACGCTTCACGGT
GGCCGACGGCGGAAGTACATCGGCCGAGCAGTGCGTGGAGTGCGGAGTAG
ACTTTGAGTGCCCGCTCGGGGGTGAGAGGACCTGCCCGCTCGGGGGTGAG
AGGACC
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