mRNA_L-elsbetiae_contig7656.16587.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig7656.16587.1
Unique NamemRNA_L-elsbetiae_contig7656.16587.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
[Close]
BLAST of mRNA_L-elsbetiae_contig7656.16587.1 vs. uniprot
Match: A0A6H5JQX5_9PHAE (ORC_WH_C domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JQX5_9PHAE)

HSP 1 Score: 107 bits (267), Expect = 2.000e-26
Identity = 61/84 (72.62%), Postives = 67/84 (79.76%), Query Frame = -1 
Query:  211 APGGGVAADEGSCSASCVDPTGGAELLARFEHASDQLASMGYVRPLKRRKMLEEKERRRGGAQLGPKGAVTRLVFSYTMEDGAL 462
            A GGGV  +EG+     +DPTGGAELLARFEHASDQLASMGYVRPLKRRK  E +   +G A  GPKG+VTRLVFSYTMEDGAL
Sbjct:  101 AAGGGVPDEEGA-----IDPTGGAELLARFEHASDQLASMGYVRPLKRRKRPEAEGAGKGQAP-GPKGSVTRLVFSYTMEDGAL 178
[Close]
BLAST of mRNA_L-elsbetiae_contig7656.16587.1 vs. uniprot
Match: D8LJC7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LJC7_ECTSI)

HSP 1 Score: 100 bits (249), Expect = 1.330e-21
Identity = 51/67 (76.12%), Postives = 53/67 (79.10%), Query Frame = -1 
Query:  211 VDPTGGAELLARFEHASDQLASMGYVRPLKRRKMLEEKERRRGGAQLGPKGAVTRLVFSYTMEDGAL 411
            +DPTGGAELLARFEHASDQLASMGYVRPLKRRK              GPKG+VTRLVFSYTMEDGAL
Sbjct: 1012 IDPTGGAELLARFEHASDQLASMGYVRPLKRRKRAXXXXXXXXXQAPGPKGSVTRLVFSYTMEDGAL 1078
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig7656.16587.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5JQX5_9PHAE2.000e-2672.62ORC_WH_C domain-containing protein n=1 Tax=Ectocar... [more]
D8LJC7_ECTSI1.330e-2176.12Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig7656contigL-elsbetiae_contig7656:8898..9379 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size483
Cds size480
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816850.800997-CDS-L-elsbetiae_contig7656:8897..93771622816850.800997-CDS-L-elsbetiae_contig7656:8897..9377Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7656 8898..9377 +
1691683860.9463322-CDS-L-elsbetiae_contig7656:8897..93771691683860.9463322-CDS-L-elsbetiae_contig7656:8897..9377Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7656 8898..9377 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig7656.16587.1prot_L-elsbetiae_contig7656.16587.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig7656 8898..9377 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig7656.16587.1

>prot_L-elsbetiae_contig7656.16587.1 ID=prot_L-elsbetiae_contig7656.16587.1|Name=mRNA_L-elsbetiae_contig7656.16587.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=160bp
PLDRLFELPTEEGASTKTTLFRTALEYYIFPAPPNILVLVLFLLRGGGIL
CHLRYTPMSVFCVNILPSTSQRAVLHGVGEHQAGHRPLRSQLRAPPPPLF
LFQHLPPLEGPHVPHGRELVGGVLEARQQLRAAGGVHAAGTTAALVGSNA
AAWGLVAVAV
back to top

mRNA from alignment at L-elsbetiae_contig7656:8898..9379+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig7656.16587.1 ID=mRNA_L-elsbetiae_contig7656.16587.1|Name=mRNA_L-elsbetiae_contig7656.16587.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=482bp|location=Sequence derived from alignment at L-elsbetiae_contig7656:8898..9379+ (Laminarionema elsbetiae ELsaHSoW15)
CCCCTGGACCGACTTTTTGAGCTCCCTACCGAAGAAGGTGCCAGCACCAA
AACGACACTTTTTCGGACAGCCCTCGAATACTACATATTTCCAGCACCGC
CCAATATTTTGGTACTGGTACTCTTCTTGCTGCGGGGGGGGGGTATCTTG
TGTCACCTACGGTACACGCCGATGTCTGTATTCTGCGTCAACATTTTACC
GTCTACCTCACAGCGCGCCGTCCTCCATGGTGTAGGAGAACACCAGGCGG
GTCACCGCCCCCTTCGGTCCCAGCTGCGCGCCCCCCCTCCTCCTCTCTTT
CTCTTCCAGCATCTTCCGCCTCTTGAGGGGCCTCACGTACCCCATGGACG
CGAGCTGGTCGGAGGCGTGCTCGAAGCGCGCCAGCAGCTCCGCGCCGCCG
GTGGGGTCCACGCAGCTGGCACTACAGCTGCCCTCGTCGGCAGCAACGCC
GCCGCCTGGGGCCTTGTTGCTGTTGCTGTCGC
back to top

Coding sequence (CDS) from alignment at L-elsbetiae_contig7656:8898..9379+

>mRNA_L-elsbetiae_contig7656.16587.1 ID=mRNA_L-elsbetiae_contig7656.16587.1|Name=mRNA_L-elsbetiae_contig7656.16587.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=960bp|location=Sequence derived from alignment at L-elsbetiae_contig7656:8898..9379+ (Laminarionema elsbetiae ELsaHSoW15)
CCCCTGGACCGACTTTTTGAGCTCCCTACCGAAGAAGGTGCCAGCACCAA
AACGACACTTTTTCGGACAGCCCTCGAATACTACATATTTCCAGCACCGC
CCAATATTTTGGTACTGGTACTCTTCTTGCTGCGGGGGGGGGGTATCTTG
TGTCACCTACGGTACACGCCGATGTCTGTATTCTGCGTCAACATTTTACC
GTCTACCTCACAGCGCGCCGTCCTCCATGGTGTAGGAGAACACCAGGCGG
GTCACCGCCCCCTTCGGTCCCAGCTGCGCGCCCCCCCTCCTCCTCTCTTT
CTCTTCCAGCATCTTCCGCCTCTTGAGGGGCCTCACGTACCCCATGGACG
CGAGCTGGTCGGAGGCGTGCTCGAAGCGCGCCAGCAGCTCCGCGCCGCCG
GTGGGGTCCACGCAGCTGGCACTACAGCTGCCCTCGTCGGCAGCAACGCC
GCCGCCTGGGGCCTTGTTGCTGTTGCTGTCCCCCTGGACCGACTTTTTGA
GCTCCCTACCGAAGAAGGTGCCAGCACCAAAACGACACTTTTTCGGACAG
CCCTCGAATACTACATATTTCCAGCACCGCCCAATATTTTGGTACTGGTA
CTCTTCTTGCTGCGGGGGGGGGGTATCTTGTGTCACCTACGGTACACGCC
GATGTCTGTATTCTGCGTCAACATTTTACCGTCTACCTCACAGCGCGCCG
TCCTCCATGGTGTAGGAGAACACCAGGCGGGTCACCGCCCCCTTCGGTCC
CAGCTGCGCGCCCCCCCTCCTCCTCTCTTTCTCTTCCAGCATCTTCCGCC
TCTTGAGGGGCCTCACGTACCCCATGGACGCGAGCTGGTCGGAGGCGTGC
TCGAAGCGCGCCAGCAGCTCCGCGCCGCCGGTGGGGTCCACGCAGCTGGC
ACTACAGCTGCCCTCGTCGGCAGCAACGCCGCCGCCTGGGGCCTTGTTGC
TGTTGCTGTC
back to top