mRNA_L-elsbetiae_contig7638.16566.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig7638.16566.1
Unique NamemRNA_L-elsbetiae_contig7638.16566.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig7638.16566.1 vs. uniprot
Match: A0A6H5J9W3_9PHAE (UBC core domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J9W3_9PHAE)

HSP 1 Score: 110 bits (275), Expect = 1.440e-25
Identity = 53/67 (79.10%), Postives = 59/67 (88.06%), Query Frame = -1 
Query:  187 GRSTLQNAQP---MGGIF*PSLYDLTIAKRPQRERLRDCFRRFSRGQRLDVRDPSGVWMGAEVVWAP 378
            G +TLQNAQP   MGG+F P+LYDLT AKR QRERLR+CFR+FSRGQRLDV DPSGVWMGAEV+WAP
Sbjct:  613 GCATLQNAQPACGMGGLFWPTLYDLTAAKRRQRERLRECFRKFSRGQRLDVLDPSGVWMGAEVMWAP 679
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BLAST of mRNA_L-elsbetiae_contig7638.16566.1 vs. uniprot
Match: D7FVT1_ECTSI (Ubiquitin-conjugating enzyme E2W n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FVT1_ECTSI)

HSP 1 Score: 109 bits (273), Expect = 2.510e-25
Identity = 52/67 (77.61%), Postives = 59/67 (88.06%), Query Frame = -1 
Query:  187 GRSTLQNAQP---MGGIF*PSLYDLTIAKRPQRERLRDCFRRFSRGQRLDVRDPSGVWMGAEVVWAP 378
            G +TLQNAQP   MGG+F P+LYDL  AKR QRERLR+CFR+FSRGQ+LDVRDPSGVWMGAEV+WAP
Sbjct:  389 GWATLQNAQPACGMGGLFWPTLYDLMAAKRRQRERLRECFRKFSRGQKLDVRDPSGVWMGAEVMWAP 455
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig7638.16566.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5J9W3_9PHAE1.440e-2579.10UBC core domain-containing protein n=1 Tax=Ectocar... [more]
D7FVT1_ECTSI2.510e-2577.61Ubiquitin-conjugating enzyme E2W n=1 Tax=Ectocarpu... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig7638contigL-elsbetiae_contig7638:5407..5796 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size390
Cds size390
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816848.8845792-CDS-L-elsbetiae_contig7638:5406..57961622816848.8845792-CDS-L-elsbetiae_contig7638:5406..5796Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7638 5407..5796 +
1691683859.49494-CDS-L-elsbetiae_contig7638:5406..57961691683859.49494-CDS-L-elsbetiae_contig7638:5406..5796Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7638 5407..5796 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig7638.16566.1prot_L-elsbetiae_contig7638.16566.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig7638 5407..5796 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig7638.16566.1

>prot_L-elsbetiae_contig7638.16566.1 ID=prot_L-elsbetiae_contig7638.16566.1|Name=mRNA_L-elsbetiae_contig7638.16566.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=130bp
MHSCVCLPSIMSPSFAAVGATRGCRDQLPATVSFATTTATVPSSRNSSSS
RSSGRRGSAVPSRSPNHLGAHPHPGRVADVQPLTAREPAEAVAQALALRP
FGDREVVQAGLEDPSHRLRVLKSRPASVIK
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mRNA from alignment at L-elsbetiae_contig7638:5407..5796+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig7638.16566.1 ID=mRNA_L-elsbetiae_contig7638.16566.1|Name=mRNA_L-elsbetiae_contig7638.16566.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=390bp|location=Sequence derived from alignment at L-elsbetiae_contig7638:5407..5796+ (Laminarionema elsbetiae ELsaHSoW15)
ATGCATTCCTGTGTGTGCCTGCCGTCCATCATGAGCCCGAGTTTTGCAGC
AGTCGGCGCCACTCGGGGGTGTCGGGATCAGCTGCCCGCCACCGTAAGCT
TCGCCACCACCACCGCCACCGTCCCCAGCTCTCGCAACAGCAGCAGCAGC
CGCAGCAGCGGCCGCCGTGGCAGCGCTGTCCCGTCTAGGAGCCCAAACCA
CCTCGGCGCCCATCCACACCCCGGAAGGGTCGCGGACGTCCAGCCTCTGA
CCGCGAGAGAACCTGCGGAAGCAGTCGCGCAGGCGCTCGCGCTGCGGCCG
TTTGGCGATCGTGAGGTCGTACAGGCTGGGCTAGAAGATCCCTCCCATCG
GCTGCGCGTTCTGAAGAGTCGACCTGCCTCCGTGATAAAG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig7638:5407..5796+

>mRNA_L-elsbetiae_contig7638.16566.1 ID=mRNA_L-elsbetiae_contig7638.16566.1|Name=mRNA_L-elsbetiae_contig7638.16566.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=780bp|location=Sequence derived from alignment at L-elsbetiae_contig7638:5407..5796+ (Laminarionema elsbetiae ELsaHSoW15)
ATGCATTCCTGTGTGTGCCTGCCGTCCATCATGAGCCCGAGTTTTGCAGC
AGTCGGCGCCACTCGGGGGTGTCGGGATCAGCTGCCCGCCACCGTAAGCT
TCGCCACCACCACCGCCACCGTCCCCAGCTCTCGCAACAGCAGCAGCAGC
CGCAGCAGCGGCCGCCGTGGCAGCGCTGTCCCGTCTAGGAGCCCAAACCA
CCTCGGCGCCCATCCACACCCCGGAAGGGTCGCGGACGTCCAGCCTCTGA
CCGCGAGAGAACCTGCGGAAGCAGTCGCGCAGGCGCTCGCGCTGCGGCCG
TTTGGCGATCGTGAGGTCGTACAGGCTGGGCTAGAAGATCCCTCCCATCG
GCTGCGCGTTCTGAAGAGTCGACCTGCCTCCGTGATAAAGATGCATTCCT
GTGTGTGCCTGCCGTCCATCATGAGCCCGAGTTTTGCAGCAGTCGGCGCC
ACTCGGGGGTGTCGGGATCAGCTGCCCGCCACCGTAAGCTTCGCCACCAC
CACCGCCACCGTCCCCAGCTCTCGCAACAGCAGCAGCAGCCGCAGCAGCG
GCCGCCGTGGCAGCGCTGTCCCGTCTAGGAGCCCAAACCACCTCGGCGCC
CATCCACACCCCGGAAGGGTCGCGGACGTCCAGCCTCTGACCGCGAGAGA
ACCTGCGGAAGCAGTCGCGCAGGCGCTCGCGCTGCGGCCGTTTGGCGATC
GTGAGGTCGTACAGGCTGGGCTAGAAGATCCCTCCCATCGGCTGCGCGTT
CTGAAGAGTCGACCTGCCTCCGTGATAAAG
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