mRNA_L-elsbetiae_contig7638.16565.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig7638.16565.1
Unique NamemRNA_L-elsbetiae_contig7638.16565.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig7638.16565.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig7638contigL-elsbetiae_contig7638:3008..3401 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Exons2
Model size372
Cds size324
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig7638.16565.1prot_L-elsbetiae_contig7638.16565.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig7638 3028..3373 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816848.810907-UTR-L-elsbetiae_contig7638:3007..30271622816848.810907-UTR-L-elsbetiae_contig7638:3007..3027Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig7638 3008..3027 -
1691683859.4554317-UTR-L-elsbetiae_contig7638:3007..30271691683859.4554317-UTR-L-elsbetiae_contig7638:3007..3027Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig7638 3008..3027 -
1622816848.8531244-UTR-L-elsbetiae_contig7638:3373..34011622816848.8531244-UTR-L-elsbetiae_contig7638:3373..3401Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig7638 3374..3401 -
1691683859.4854987-UTR-L-elsbetiae_contig7638:3373..34011691683859.4854987-UTR-L-elsbetiae_contig7638:3373..3401Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig7638 3374..3401 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816848.8266747-CDS-L-elsbetiae_contig7638:3027..33211622816848.8266747-CDS-L-elsbetiae_contig7638:3027..3321Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7638 3028..3321 -
1691683859.4667184-CDS-L-elsbetiae_contig7638:3027..33211691683859.4667184-CDS-L-elsbetiae_contig7638:3027..3321Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7638 3028..3321 -
1622816848.8401852-CDS-L-elsbetiae_contig7638:3343..33731622816848.8401852-CDS-L-elsbetiae_contig7638:3343..3373Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7638 3344..3373 -
1691683859.475988-CDS-L-elsbetiae_contig7638:3343..33731691683859.475988-CDS-L-elsbetiae_contig7638:3343..3373Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7638 3344..3373 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig7638.16565.1

>prot_L-elsbetiae_contig7638.16565.1 ID=prot_L-elsbetiae_contig7638.16565.1|Name=mRNA_L-elsbetiae_contig7638.16565.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=108bp
MVVVAAAAAARWGGMGIDLLGARVALRRARVARAAVRVLGLVLVLNGGHG
GISSIGRSAFYVRFKTLSGQLCVFAFFDSNETAGAALGSNSIPSSLVLTL
SLMVVVL*
back to top

mRNA from alignment at L-elsbetiae_contig7638:3008..3401-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig7638.16565.1 ID=mRNA_L-elsbetiae_contig7638.16565.1|Name=mRNA_L-elsbetiae_contig7638.16565.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=394bp|location=Sequence derived from alignment at L-elsbetiae_contig7638:3008..3401- (Laminarionema elsbetiae ELsaHSoW15)
GCTGACGCGTCTGATTTTAACCTTGGTTATGGTGGTGGTGGCGGCGGCGG
CGGCGGCGGCGGCGGCGGCGGCGCTGGCAGCGGTGGGGCGGGATGGGCAT
CGACCTTCTCGGCGCCCGTGTTGCATTACGTAGAGCAAGGGTCGCACGAG
CTGCCGTAAGGGTTTTAGGTTTGGTTTTGGTCCTCAACGGGGGACATGGG
GGCATCTCATCGATCGGTCGGTCGGCGTTTTACGTGCGATTTAAAACTCT
CAGCGGGCAGCTCTGTGTCTTTGCTTTTTTTGATTCAAACGAAACTGCCG
GGGCGGCCCTAGGATCGAACTCCATCCCGTCTTCTCTTGTCTTGACTCTG
TCCCTGATGGTTGTGGTGTTGTAGTCGATTGACTACACCTGGGG
back to top

Coding sequence (CDS) from alignment at L-elsbetiae_contig7638:3008..3401-

>mRNA_L-elsbetiae_contig7638.16565.1 ID=mRNA_L-elsbetiae_contig7638.16565.1|Name=mRNA_L-elsbetiae_contig7638.16565.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=648bp|location=Sequence derived from alignment at L-elsbetiae_contig7638:3008..3401- (Laminarionema elsbetiae ELsaHSoW15)
ATGGTGGTGGTGGCGGCGGCGGCGGCGGCGATGGTGGTGGTGGCGGCGGC
GGCGGCGGCGCGGTGGGGCGGGATGGGCATCGACCTTCTCGGCGCCCGTG
TTGCATTACGTAGAGCAAGGGTCGCACGAGCTGCCGTAAGGGTTTTAGGT
TTGGTTTTGGTCCTCAACGGGGGACATGGGGGCATCTCATCGATCGGTCG
GTCGGCGTTTTACGTGCGATTTAAAACTCTCAGCGGGCAGCTCTGTGTCT
TTGCTTTTTTTGATTCAAACGAAACTGCCGGGGCGGCCCTAGGATCGAAC
TCCATCCCGTCTTCTCTTGTCTTGACTCTGTCCCTGATGGTTGTGGTGTT
GTAGCGGTGGGGCGGGATGGGCATCGACCTTCTCGGCGCCCGTGTTGCAT
TACGTAGAGCAAGGGTCGCACGAGCTGCCGTAAGGGTTTTAGGTTTGGTT
TTGGTCCTCAACGGGGGACATGGGGGCATCTCATCGATCGGTCGGTCGGC
GTTTTACGTGCGATTTAAAACTCTCAGCGGGCAGCTCTGTGTCTTTGCTT
TTTTTGATTCAAACGAAACTGCCGGGGCGGCCCTAGGATCGAACTCCATC
CCGTCTTCTCTTGTCTTGACTCTGTCCCTGATGGTTGTGGTGTTGTAG
back to top