prot_L-elsbetiae_contig7611.16533.1 (polypeptide) Laminarionema elsbetiae ELsaHSoW15

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_L-elsbetiae_contig7611.16533.1
Unique Nameprot_L-elsbetiae_contig7611.16533.1
Typepolypeptide
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Sequence length437
Homology
BLAST of mRNA_L-elsbetiae_contig7611.16533.1 vs. uniprot
Match: D7FJ86_ECTSI (RING-type domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FJ86_ECTSI)

HSP 1 Score: 526 bits (1355), Expect = 7.100e-176
Identity = 312/451 (69.18%), Postives = 335/451 (74.28%), Query Frame = 0
Query:    1 VGLVCCVLLLLLRRKGKVDWSLLLLFTPMWVCVLLAATLRCITPPHPQVMGDQTQFHRAGSFFTGLFHLVARGAQPMLIVLKVDGQVEGAWSSVFIPLWMFMGAIALGGSALCCCAPMVSRGVIPEIRPLLIRGMLLCSVGTFSLAFLALLFLVFLTLELDNNENFSPRMILAPLIALYALILVFLPLLLLVTRHYVRTMRTAEEQFRQANDPNGGXXXXXXXXXVG---DAEAPGQQWGSPPLFPARERAGAGRAGXXXXXXXXXGVGSSVMAPTILMRESSTLFRRASESICRRLGETDGSLLDPEVGAFE-------LADWSRRSQGGGTRSRDS----VSDXXXXXXXXXXXXXGXXXXXXPGGERVPQRSSRSFHALQDLLPRARGVVARGGRRFSAVVSGASGREGHERFAMSGGRQRAGAEKEGSPRQRLREGNEAASKGSPEE 437
            +G+    + L  R +GKVDWSLLLLFTPMW CVLLA TLRCITPPHPQV+ +    HRAG+FFTGLFHLVARGAQP+LIVLKVDGQ+EG WSSVFIPLWMFMGAIALGGSALCCCAP VSRGVIPEIRPLLIRGMLLCSVGTFSLAF ALLFLVFLTLELDNNENFSPR ILAPLIALYALILVFLPLLLLVTRHYVRTMRTAEEQFRQANDPNGG          G   D EA     GSPP+  A          XXXXXXXXX     VMAPTILMRESS LFRRAS S CRRLGE DGSL++P+V AFE       LADW RR  GG  RSRDS    + D                      GERVPQRSSRSFH LQD  P ARG V RGG+RF+A V+G+S REGHERF++S GRQ AGAEKEGSPR R  +G  A SK +PE+
Sbjct:  131 LGVAAAKVTLAYRLEGKVDWSLLLLFTPMWACVLLAGTLRCITPPHPQVIAEHASLHRAGAFFTGLFHLVARGAQPVLIVLKVDGQLEGPWSSVFIPLWMFMGAIALGGSALCCCAPTVSRGVIPEIRPLLIRGMLLCSVGTFSLAFCALLFLVFLTLELDNNENFSPRTILAPLIALYALILVFLPLLLLVTRHYVRTMRTAEEQFRQANDPNGGGGMDASSTAFGGVDDVEAGRGVRGSPPIGGAEXXXXXXXXXXXXXXXXXXXX--XVMAPTILMRESSMLFRRASASFCRRLGEADGSLMNPDVTAFEVRFRAVELADWGRR--GGRFRSRDSDIAAIDDGGGSEER---------------GERVPQRSSRSFHVLQDCFPHARGAVRRGGQRFTAAVTGSSSREGHERFSVSSGRQLAGAEKEGSPRPRGEDG--ATSKRTPED 560          
BLAST of mRNA_L-elsbetiae_contig7611.16533.1 vs. uniprot
Match: A0A7S2USS3_9STRA (Hypothetical protein (Fragment) n=2 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2USS3_9STRA)

HSP 1 Score: 114 bits (284), Expect = 1.220e-24
Identity = 75/205 (36.59%), Postives = 112/205 (54.63%), Query Frame = 0
Query:    8 LLLLLRRKGKVD-WSLLLLFTPMWVCVLLAATLRCITPPHPQVMGDQTQ---FHRAGSFFTGLFHLVARGAQPMLIVLKVDGQVEGAWSSVFIPLWMFMGAIALGGSALCCCAPMVSRGVIP--EIRPLLIRGMLLCSVGTFSLAFLALLFLVFLTLELDNN-ENFSPRMILAPLIALYALILVFLPLLLLVTRHYVR-TMRTAE 204
            L++ L  +G V  + L LLF P+W  V  ++ +RC  P   Q      Q    HR  +   G FH ++R  QP+LI  K+D  + G W SVF P W+ +  +      +   AP++SR  +   E+R LL+R M LCS+ TF++A    +FL  L  +L+   +  S   IL P+I LY+LI+VFLP+L+L ++ Y R T R  E
Sbjct:  124 LVMFLEDQGGVSKYPLTLLFLPIWASVTSSSFIRCCLPSPAQRQNRTAQPAALHRCSALVAGTFHFLSRALQPLLITTKIDNFLSGDWWSVFTPAWILLCVMLCISVIVGNTAPLISRHQLEATEVRILLVRMMFLCSLVTFTVAIFGFMFLYNLCRKLEGGRDTASITQILIPVIILYSLIMVFLPMLILASQRYHRATQRLVE 328          
BLAST of mRNA_L-elsbetiae_contig7611.16533.1 vs. uniprot
Match: A0A836CE73_9STRA (RING-type domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CE73_9STRA)

HSP 1 Score: 64.7 bits (156), Expect = 1.680e-7
Identity = 63/196 (32.14%), Postives = 95/196 (48.47%), Query Frame = 0
Query:    7 VLLLLLRRKGKVDWSL--LLLFTPMWVCVLLAATLRCITPPHPQVMGDQTQFHRAGSFFTGLFHLVARGAQPMLIVLKVDGQVEGAWSSVFIP--LWMFMGAIALGGSALCCCA---PMVSRGVIPEI-RPLLIRGMLLCSVGTFSLAFLALLFLVFLTLELDNNENFSPRM-----ILAPLIALYALILVFLPLL 189
            VL  +LR  G +  S+  +++  P+WV  +  +T   + P  P +     + +R   +   LFHL A G Q  LI  KVDG + G+WS+VFIP  L + +  IAL G+ L       PM  R  +P + RP  +    L  +   +  +L  +F  F  L    +E   P       IL PLI + ++ +VFLPLL
Sbjct:  119 VLTSVLRLGGAIPASVPWVVVLVPLWVDAVACSTYLALAPVPPHLDDVAARDYRGNMWNAALFHLGAFGLQAGLIATKVDGILHGSWSNVFIPAFLALIVLVIALAGTTLHLMGVFCPMCLR--LPSLSRPQRVIFASLALLALLAWMWLVCIFQAFEELVSALSEPKGPPPEAVDDILLPLITVVSVTVVFLPLL 312          
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig7611.16533.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D7FJ86_ECTSI7.100e-17669.18RING-type domain-containing protein n=2 Tax=Ectoca... [more]
A0A7S2USS3_9STRA1.220e-2436.59Hypothetical protein (Fragment) n=2 Tax=Fibrocapsa... [more]
A0A836CE73_9STRA1.680e-732.14RING-type domain-containing protein n=1 Tax=Tribon... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR019396Transmembrane Fragile-X-F-associated proteinPFAMPF10269Tmemb_185Acoord: 81..185
e-value: 3.3E-8
score: 33.5
IPR019396Transmembrane Fragile-X-F-associated proteinPANTHERPTHR13568FAM11A, B PROTEINcoord: 66..184
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 131..158
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 40..58
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 98..119
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 1..19
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 193..437
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 20..39
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 79..97
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 159..169
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 59..78
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 170..192
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 120..130
NoneNo IPR availableTMHMMTMhelixcoord: 254..276
NoneNo IPR availableTMHMMTMhelixcoord: 20..39
NoneNo IPR availableTMHMMTMhelixcoord: 134..156
NoneNo IPR availableTMHMMTMhelixcoord: 91..113
NoneNo IPR availableTMHMMTMhelixcoord: 59..81
NoneNo IPR availableTMHMMTMhelixcoord: 171..193

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig7611contigL-elsbetiae_contig7611:270..9543 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig7611.16533.1mRNA_L-elsbetiae_contig7611.16533.1Laminarionema elsbetiae ELsaHSoW15mRNAL-elsbetiae_contig7611 270..9543 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_L-elsbetiae_contig7611.16533.1 ID=prot_L-elsbetiae_contig7611.16533.1|Name=mRNA_L-elsbetiae_contig7611.16533.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=437bp
VGLVCCVLLLLLRRKGKVDWSLLLLFTPMWVCVLLAATLRCITPPHPQVM
GDQTQFHRAGSFFTGLFHLVARGAQPMLIVLKVDGQVEGAWSSVFIPLWM
FMGAIALGGSALCCCAPMVSRGVIPEIRPLLIRGMLLCSVGTFSLAFLAL
LFLVFLTLELDNNENFSPRMILAPLIALYALILVFLPLLLLVTRHYVRTM
RTAEEQFRQANDPNGGGSGGGGGGGVGDAEAPGQQWGSPPLFPARERAGA
GRAGGGGGGGIGGGVGSSVMAPTILMRESSTLFRRASESICRRLGETDGS
LLDPEVGAFELADWSRRSQGGGTRSRDSVSDGIGDGIGDGIGDGGVGVGV
GPGGERVPQRSSRSFHALQDLLPRARGVVARGGRRFSAVVSGASGREGHE
RFAMSGGRQRAGAEKEGSPRQRLREGNEAASKGSPEE
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR019396TM_Fragile-X-F-assoc