mRNA_L-elsbetiae_contig7574.16474.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig7574.16474.1
Unique NamemRNA_L-elsbetiae_contig7574.16474.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig7574.16474.1 vs. uniprot
Match: D7FNR2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FNR2_ECTSI)

HSP 1 Score: 437 bits (1124), Expect = 1.860e-153
Identity = 208/242 (85.95%), Postives = 227/242 (93.80%), Query Frame = 1 
Query:    7 APLPGLWKRQQPNTLGSWRVESVVDSGEPNSMFVFLFDDGSVHTAVSGAGGQDDQAGRWRVRGNEFSLTVDRRSKSRMLEDLRYVGVLKKFSSVVEGSVIEGQMDPAVVGKFKMTPLESSMAADLKKAAEINDDAKYIVPKYSKSAMAGDWVLMWQDTGAVFRLHLGEDLQFESVEGVGSGQLGGRWNLWGPDRMLMTVVRSKSHGVQMHGDHMFWGTKLEGPPDSKIPLKISGYVMYGFLE 732
            AP PGL+ R  PN LGSWRVESV+D+ +PNSMFVFLFDDGSVHTAVSG  G+DD AGRWRVRGNEFSLTV+R+S+SR L+DL+YVGVLKKFSSVVEGSVIEGQMDPAVVGKFKMTP+ESSMA+DLKKAAE ND AKY+ PKYSK+A+AGDWVLMWQDTGAVFRLHLGEDLQFES++G+GSGQLGGRWNLWG +RM MTVVRSKSHGVQMHGDHMFWGTKLEGPPDSKIPLKISGYVMYGFLE
Sbjct:   28 APAPGLFGRSTPNGLGSWRVESVLDTQKPNSMFVFLFDDGSVHTAVSGTDGKDDHAGRWRVRGNEFSLTVNRKSQSRFLDDLKYVGVLKKFSSVVEGSVIEGQMDPAVVGKFKMTPVESSMASDLKKAAEANDSAKYVAPKYSKAAIAGDWVLMWQDTGAVFRLHLGEDLQFESLKGLGSGQLGGRWNLWGTERMFMTVVRSKSHGVQMHGDHMFWGTKLEGPPDSKIPLKISGYVMYGFLE 269
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BLAST of mRNA_L-elsbetiae_contig7574.16474.1 vs. uniprot
Match: A0A6H5LDX9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LDX9_9PHAE)

HSP 1 Score: 209 bits (533), Expect = 3.820e-63
Identity = 99/113 (87.61%), Postives = 109/113 (96.46%), Query Frame = 1 
Query:  253 RYVGVLKKFSSVVEGSVIEGQMDPAVVGKFKMTPLESSMAADLKKAAEINDDAKYIVPKYSKSAMAGDWVLMWQDTGAVFRLHLGEDLQFESVEGVGSGQLGGRWNLWGPDRM 591
            RYVGVLKKFSSVVEGSVIEGQMDPAVVGKFKMTP+ESSMA+DLKKAAE ND AKY+ PKYSK+A+AGDWVLMWQDTGAVFRLHLGEDLQFES++G+GSGQLGGRWNLWG +R+
Sbjct:  229 RYVGVLKKFSSVVEGSVIEGQMDPAVVGKFKMTPVESSMASDLKKAAEANDSAKYVAPKYSKAAIAGDWVLMWQDTGAVFRLHLGEDLQFESLKGLGSGQLGGRWNLWGTERL 341
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig7574.16474.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FNR2_ECTSI1.860e-15385.95Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5LDX9_9PHAE3.820e-6387.61Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig7574contigL-elsbetiae_contig7574:4998..9105 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-01_004560.1
Exons6
Model size732
Cds size732
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig7574.16474.1prot_L-elsbetiae_contig7574.16474.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig7574 4998..9105 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816841.1406448-CDS-L-elsbetiae_contig7574:4997..51271622816841.1406448-CDS-L-elsbetiae_contig7574:4997..5127Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7574 4998..5127 +
1691683854.0303378-CDS-L-elsbetiae_contig7574:4997..51271691683854.0303378-CDS-L-elsbetiae_contig7574:4997..5127Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7574 4998..5127 +
1622816841.1525373-CDS-L-elsbetiae_contig7574:6608..67321622816841.1525373-CDS-L-elsbetiae_contig7574:6608..6732Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7574 6609..6732 +
1691683854.0407288-CDS-L-elsbetiae_contig7574:6608..67321691683854.0407288-CDS-L-elsbetiae_contig7574:6608..6732Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7574 6609..6732 +
1622816841.1706278-CDS-L-elsbetiae_contig7574:7082..72361622816841.1706278-CDS-L-elsbetiae_contig7574:7082..7236Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7574 7083..7236 +
1691683854.0499685-CDS-L-elsbetiae_contig7574:7082..72361691683854.0499685-CDS-L-elsbetiae_contig7574:7082..7236Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7574 7083..7236 +
1622816841.1816597-CDS-L-elsbetiae_contig7574:7776..79551622816841.1816597-CDS-L-elsbetiae_contig7574:7776..7955Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7574 7777..7955 +
1691683854.061434-CDS-L-elsbetiae_contig7574:7776..79551691683854.061434-CDS-L-elsbetiae_contig7574:7776..7955Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7574 7777..7955 +
1622816841.1915672-CDS-L-elsbetiae_contig7574:8405..85051622816841.1915672-CDS-L-elsbetiae_contig7574:8405..8505Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7574 8406..8505 +
1691683854.0738056-CDS-L-elsbetiae_contig7574:8405..85051691683854.0738056-CDS-L-elsbetiae_contig7574:8405..8505Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7574 8406..8505 +
1622816841.2019331-CDS-L-elsbetiae_contig7574:9060..91051622816841.2019331-CDS-L-elsbetiae_contig7574:9060..9105Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7574 9061..9105 +
1691683854.0833426-CDS-L-elsbetiae_contig7574:9060..91051691683854.0833426-CDS-L-elsbetiae_contig7574:9060..9105Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7574 9061..9105 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig7574.16474.1

>prot_L-elsbetiae_contig7574.16474.1 ID=prot_L-elsbetiae_contig7574.16474.1|Name=mRNA_L-elsbetiae_contig7574.16474.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=244bp
MKAPLPGLWKRQQPNTLGSWRVESVVDSGEPNSMFVFLFDDGSVHTAVSG
AGGQDDQAGRWRVRGNEFSLTVDRRSKSRMLEDLRYVGVLKKFSSVVEGS
VIEGQMDPAVVGKFKMTPLESSMAADLKKAAEINDDAKYIVPKYSKSAMA
GDWVLMWQDTGAVFRLHLGEDLQFESVEGVGSGQLGGRWNLWGPDRMLMT
VVRSKSHGVQMHGDHMFWGTKLEGPPDSKIPLKISGYVMYGFLE
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mRNA from alignment at L-elsbetiae_contig7574:4998..9105+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig7574.16474.1 ID=mRNA_L-elsbetiae_contig7574.16474.1|Name=mRNA_L-elsbetiae_contig7574.16474.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=4108bp|location=Sequence derived from alignment at L-elsbetiae_contig7574:4998..9105+ (Laminarionema elsbetiae ELsaHSoW15)
ATGAAGGCCCCGTTGCCTGGCTTGTGGAAAAGGCAACAGCCCAACACGCT
GGGCTCCTGGAGGGTAGAATCGGTGGTGGACAGCGGGGAGCCGAACAGCA
TGTTCGTTTTTTTATTCGACGATGGATCAGGTGAGTATAGTGAGCTGGAC
TTGTGGTTCAACGTCAGTACTCTATCGAGGATCTACAGCAGTAGCGCTCA
CAGGGCAAACGTTCAATGTTGCGCCCCAGCGGGGCTGTGTGCTCGACAAC
AACTAACGTTTGCTCTTCCGAAAAGTCTCACTCGCCTCGATAAACGCACA
TATCCATTCGATAAATTCACATATCCATTATATATCTCTCCCTTCCGATG
TTCATTCACTCCGCTCGGCAGTATTTTCAAATCCAAACTGCTTGTGTATC
TTTCACGTCACTCACACTCAGGAGCAGACAACGACATAGTCTACACACTA
TGCGATGCCCGCGGAGTGCGTGACTTGATGTGCTAGACTGGTAGTGGCCA
TGCCTTCGACGAAGCACAAAAAAGTTAGCAGCAGCAGCAGTGGTCTGACA
GGTGGACCGGTCTTGCTATCTCTCGGGGTAACGAAACCAGTAACTTACAG
TGTTGTAGGTAAATTATCTGCGAAAACTCGGTGCTGATGGCGAAGACACC
TACTAATGGAGCCAAGGGAGGGTCACGACAGCAGTCAAAAATAAACCGGA
AGCCGCCGTGTGGGGGGCTTCTGCTGCGGGACGCACAGAGCTACCAGTCG
ATTAGGGCGATGAACCCCTGTTTTCTGAATACTCCGGCCGATGCCCACAA
ACTGATCGTCTCTTTTCTGATTCGCCGAGCTTTGGGGCTTGATTCGTCCA
ACCTTCGCGTGTCCTTTAGATACTATAGGGGCGGAGGAGGCTGCCGTAGG
AGGAACCGTCTTAGACGGGAGCAGGTCCATACAGCAGAACCATTCACTAG
TTGTTCTCCCGCCCACCCTCCCGGAAATTCATGCCGGATGGGGGAACGAG
GGGGAGAGAGCAGCTGTTCCCTCTCGTTTTTCCTTTGAGGGTGGGGCGGG
GGGGAGGCCCCCCTCCCCCACTCAAGGGGAAGAAGTTAAAAAAAGGCATG
GCCGAACGCGTCCCTTCGAACGCATTCAAGCAAAACCTGGCTGGCAGATC
GTCAGACCTTTCGCCCCCCCTTCTCCTCTGCCGCGCAAATGCAGCGCTCT
GTCACTTCTTCACCACGCTTTTGGGGGGGGGGGGGGTTGAAAGACAACCG
CAACGAAGAGCGTTCATGGATCCTCATTCAAAAACAAATTATCGCACATA
GCAGCTCTTGGGTGCTGCTGTCTGAGTCTTCCCGCCGCACACAGACAGAC
AGTGTCGCCTTGTTTGGTTGGCATCGCTCAAATCAAGGTTGTATCAATAC
GTCCGAGTGTGTCCATCGCATCGTCCTAGATAGCTTATAGGACAGACATC
ACCTTGCGGTGGCTGAGGGAGCACTACTTTGTATTGCTACTGCTGTTGTT
CCGCGCCAACTTATCTCATCAGCCTGCACCCCCGCCCCCCGCTCCCGCCC
CGCCCTTGCCGCTGCGTCCGTTTCTGAATGTAAACCGCTGTCTTTCCTCC
TGCCAATGAAGTGCACACGGCCGTGAGCGGGGCGGGCGGGCAGGACGACC
AGGCCGGTCGCTGGCGTGTGCGAGGAAACGAGTTCTCTCTCACGGTGGAC
CGGCGTTCCAAGTCGAGAATGCTGGAAGACCTGAGGTGCGCATGTATGTA
CGTAAGCACCCATCCCAGCCCCCCGTAGGCTTGTGACTTGCCTTGTGGAA
GTTTCTTGCAAGGGCATAAACATGTGATGGAGTTGCGGCATAGTGTATGT
ACCTGTGCTGAAGTAAACATGTACCTGTGTGCTTCTGGTAGTTATACAAT
ATAAATCCTCAACCGGGCGGCGGCGTTCCTTCCTGGGGGCACGGCAGAAA
GGAGGGTTGTGGAGAAGGGAAACAGGTGAGGACAACTCGGAAGGCAAGAG
GAGTAAACCCTCATCCCGCGCGTCCCGCTCGCGGCTTCTGGGTTTCCACG
TGTTGGCGGCGTGGGCGTTTTGCGTCTGCGCGCAGGTATGTAGGCGTTTT
GAAGAAGTTCAGCTCCGTGGTGGAGGGAAGCGTGATCGAGGGACAGATGG
ACCCCGCAGTGGTCGGAAAGTTCAAGATGACGCCGCTCGAGTCCTCCATG
GCGGCGGACCTGAAGAAGGCCGCCGAGATAAACGACGATGTGCGTATTTC
AGCGGATTCGGCGCGGCAAGCGTTGGTGTCTGTTTGGTGTGTTTCGTTGG
CGTGGGCCTCACTTGTTTTTGCCCCGTTTTTCAGCACGTGTTCTGGTCAG
ATAGTATGTCCTGTCTGTTGTGTTTCGAATCTGCCTTCTCAGGTGTGGTT
CCTGTGTTGTATGTAGCCCTCTTGCTTTTTCAGAGACACATGGGTCGTTT
CGGAGCGGTCGAAGAGTCGCCTGTCATTCTCTGTGTCGTCTCCGGTTCGG
CGATGCCGGTCGTCGTTCGATTTTTTTTTCTGGTGCAATCAGCTGCCTAC
CCGACTTCACTGGCGGTTTCGCGGCCCCCGATTCCGAAATTTCGTGGGTG
AAAGTACATCCATGGGTATGTACATGTTTTGGTGAGGTGCTGATGGCACA
TCCTTCAAAATTGGGCATTGCTGGTCTCCCTCCTCGCCACCTCAATGCGG
TGATTGTTACCTACGGATGGCACAGACCCGCAGTCAGCAACGTGTGCATC
ACCTCTCTGCTTGCTTGCCTGCACTGCAGGCCAAGTACATTGTCCCCAAG
TACTCCAAGTCGGCGATGGCGGGAGACTGGGTGTTGATGTGGCAGGACAC
CGGGGCTGTGTTCCGCCTCCACCTCGGCGAGGACCTCCAGTTCGAGAGCG
TCGAGGGCGTTGGGAGCGGCCAGCTCGGAGGGAGGTGGAACCTGTGGGGG
CCCGACAGGTGTGTGCTTGCGTGTTTGATTATTTTTCTACGAATGTCAGC
GGCTTACGTACGTCCGACCTGTGAAAAGAGTCGCTCCGGGGGGACTGTTG
TAGACGCGCTAAATTTAGCCCTACCCCTCTTGCCGTCCCAGACTACTTCT
TGACGGGTACAACATCCGCAATCCGTGTAGATAGTAATAGGTCGCTGGCC
GCTTGTTTGTGGGTATATTTCGGGGTACGTTATCCAACGTGATGCGTTTT
GTCTCGTTTCTAAAAGTGTGCGGGCGGCGGTGTAGTAGACGCGGCCAGGG
GGCAGTCGGGGGTGCCTGCTATATAGGTGGGCAGTGAAGTGGCCTCTCCG
CCTCCCCTCCCCGCAAGACAAGCCGTGCCGCGTAACTCCCTTGAACTGCT
GTCTTCCCTTATTTTCACCCGCTTCTTTTCGTGTTTTGCTCTGTCCCTGC
CGTACCAGGATGCTCATGACAGTGGTGCGCTCAAAGAGCCACGGCGTCCA
GATGCACGGGGATCACATGTTTTGGGGGACCAAGCTCGAGGGGCCGCCGG
ACTCCAAGGTTCGTCGAGGACTCAGATCCACAAGTCGTCGTCGAACCAGT
GCTGTGGCGGAGCTTCAATGCTACTGCGCTGTAGACATGCCGAATAGAAG
CGAGTCGAGGGTTCCTTCGGGGTTGCTTTCCGCCCCCGAAGCTTTGTTCT
GCGTCACGACCGGCCTGCATGGCTTGTCTTTGCCGGACGAAGCAGTATAC
ATAAACGACCAGGCGTGCTATTTTCTCTTGCTCTTATCCGGCTTGGTGGG
CATTTTGGCGCCGGCGTGGACGGCACTGCGCTGCCCGCTGTTGTTGTCCC
CCTGCGTGCTTGTACCAAGCACTGCTGTGTATCTTGTGCAGGGTGATGCG
TTTCTCAGACTGACCGGTTTGTTGAGTCCACGTCTCCTCACCCGCCACTC
TTCCCGCGCACGTGCAGTCCACAATATATTGCAGGATGTGAGAGCACCAT
CTGGCCTCTCTCTCTCTCTCTCTCTCTCTTATGCGCCCCCCCCCCCCCCC
CCCCCCCCCCCCCCTTTCCCCCCCCCCCCCCCCCCCCCCGCGATTGTTTC
CGCCCGCCAACAGATTCCCTTGAAAATCAGCGGATACGTCATGTACGGCT
TCTTAGAG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig7574:4998..9105+

>mRNA_L-elsbetiae_contig7574.16474.1 ID=mRNA_L-elsbetiae_contig7574.16474.1|Name=mRNA_L-elsbetiae_contig7574.16474.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1464bp|location=Sequence derived from alignment at L-elsbetiae_contig7574:4998..9105+ (Laminarionema elsbetiae ELsaHSoW15)
ATGAAGGCCCCGTTGCCTGGCTTGTGGAAAAGGCAACAGCCCAACACGCT
GGGCTCCTGGAGGGTAGAATCGGTGGTGGACAGCGGGGAGCCGAACAGCA
TGTTCGTTTTTTTATTCGACGATGGATCAGATGAAGGCCCCGTTGCCTGG
CTTGTGGAAAAGGCAACAGCCCAACACGCTGGGCTCCTGGAGGGTAGAAT
CGGTGGTGGACAGCGGGGAGCCGAACAGCATGTTCGTTTTTTTATTCGAC
GATGGATCAGTGCACACGGCCGTGAGCGGGGCGGGCGGGCAGGACGACCA
GGCCGGTCGCTGGCGTGTGCGAGGAAACGAGTTCTCTCTCACGGTGGACC
GGCGTTCCAAGTCGAGAATGCTGGAAGACCTGAGTGCACACGGCCGTGAG
CGGGGCGGGCGGGCAGGACGACCAGGCCGGTCGCTGGCGTGTGCGAGGAA
ACGAGTTCTCTCTCACGGTGGACCGGCGTTCCAAGTCGAGAATGCTGGAA
GACCTGAGGTATGTAGGCGTTTTGAAGAAGTTCAGCTCCGTGGTGGAGGG
AAGCGTGATCGAGGGACAGATGGACCCCGCAGTGGTCGGAAAGTTCAAGA
TGACGCCGCTCGAGTCCTCCATGGCGGCGGACCTGAAGAAGGCCGCCGAG
ATAAACGACGATGTATGTAGGCGTTTTGAAGAAGTTCAGCTCCGTGGTGG
AGGGAAGCGTGATCGAGGGACAGATGGACCCCGCAGTGGTCGGAAAGTTC
AAGATGACGCCGCTCGAGTCCTCCATGGCGGCGGACCTGAAGAAGGCCGC
CGAGATAAACGACGATGCCAAGTACATTGTCCCCAAGTACTCCAAGTCGG
CGATGGCGGGAGACTGGGTGTTGATGTGGCAGGACACCGGGGCTGTGTTC
CGCCTCCACCTCGGCGAGGACCTCCAGTTCGAGAGCGTCGAGGGCGTTGG
GAGCGGCCAGCTCGGAGGGAGGTGGAACCTGTGGGGGCCCGACAGGCCAA
GTACATTGTCCCCAAGTACTCCAAGTCGGCGATGGCGGGAGACTGGGTGT
TGATGTGGCAGGACACCGGGGCTGTGTTCCGCCTCCACCTCGGCGAGGAC
CTCCAGTTCGAGAGCGTCGAGGGCGTTGGGAGCGGCCAGCTCGGAGGGAG
GTGGAACCTGTGGGGGCCCGACAGGATGCTCATGACAGTGGTGCGCTCAA
AGAGCCACGGCGTCCAGATGCACGGGGATCACATGTTTTGGGGGACCAAG
CTCGAGGGGCCGCCGGACTCCAAGGATGCTCATGACAGTGGTGCGCTCAA
AGAGCCACGGCGTCCAGATGCACGGGGATCACATGTTTTGGGGGACCAAG
CTCGAGGGGCCGCCGGACTCCAAGATTCCCTTGAAAATCAGCGGATACGT
CATGTACGGCTTCTTAGAGATTCCCTTGAAAATCAGCGGATACGTCATGT
ACGGCTTCTTAGAG
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