mRNA_L-elsbetiae_contig7573.16473.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15
Overview
Homology
BLAST of mRNA_L-elsbetiae_contig7573.16473.1 vs. uniprot
Match: D7FT11_ECTSI (EsV-1-1 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FT11_ECTSI) HSP 1 Score: 185 bits (470), Expect = 1.270e-49 Identity = 119/250 (47.60%), Postives = 149/250 (59.60%), Query Frame = 3 Query: 522 VPLDAAANNGHSKVVRELIQQVGIKGCAGASGGLDALRAAAMEQHVDIMAILMDAGVVDSGVVLYAAAEWGREAAVKFLLQQRRRRGPIAPNGGLLGYLNFRNPFGSTPLLASVAGVGKTDEGGEPMLLSIKVVRLLIDAGADTSSAVRVTSGRE-VLFDDTPLILADDGLRTKPVGGGD-AVEEQFCRLEAIRRLLLRVEAVHALSWLWPKEPLLVGGAAKGSSSRTARKTPASDGTQLLLVLPILRRR 1265 VPLD AA +GH+ VVRELIQ++GI+GC S G AL AA QH+DIMAIL +AGVVD+G LY AA G EA+VKFLL+ R + G G YLN R+ G TPL+ G + ++VR+L+DAGADT+S V+V + + V+F+DTPL LR K V G A +E RLEAI RLLLRV+AVHA+SWLWP +G R P L L+LPIL+RR Sbjct: 280 VPLDLAAKHGHTDVVRELIQELGIEGCDATSAGAHALAFAASNQHLDIMAILTEAGVVDTGKALYLAAGMGHEASVKFLLRHRHKEGGCGVEGA---YLNARDVNGYTPLVVCTQGCFSQ---------APRIVRMLVDAGADTTSPVQVMNLKGGVVFNDTPLAFTKLRLRKKIVADGKPATKEHLQRLEAICRLLLRVDAVHAVSWLWPSGAPFIG--------RATETDPEPPLPALKLMLPILKRR 509
BLAST of mRNA_L-elsbetiae_contig7573.16473.1 vs. uniprot
Match: D7G1U9_ECTSI (EsV-1-199 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G1U9_ECTSI) HSP 1 Score: 176 bits (446), Expect = 6.510e-47 Identity = 110/239 (46.03%), Postives = 140/239 (58.58%), Query Frame = 3 Query: 546 NGHSKVVRELIQQVGIKGCAGASGGLDALRAAAMEQHVDIMAILMDAGVVDSGVVLYAAAEWGREAAVKFLLQQRRRRGPIAPNGGLLGYLNFRNPFGSTPLLASVAGVGKTDEGGEPMLLSIKVVRLLIDAGADTSSAVRVT-SGREVLFDDTPLILADDGLRTKPVGGGDAVEEQFCRLEAIRRLLLRVEAVHALSWLWPKEPLLVGGAAKGSSSRTARKTPASDGTQLLLVLPILR 1259 +GHS+VVRELIQQ+G++GC G S G+++LR AA EQ+VDIM IL GVVD+G L AAE+ RE +VKFLLQ + GG N +PFG TPL+ ++ G + S ++ R LID GADT S V VT SG DTPL A LR VGG +A EEQ L+AI RLL ++EAVHA+SWLW +G A +SSR P + G L + +LR Sbjct: 190 HGHSEVVRELIQQLGVRGCGGVSAGVESLRLAATEQYVDIMGILTVGGVVDTGRALVVAAEYSREESVKFLLQHQA-------GGGTWYVNNTLDPFGRTPLVCTIEACGSS---------SPRIARFLIDDGADTKSTVLVTRSGEWTTSRDTPLGFATRSLRQNKVGGKNATEEQLRSLKAIHRLLSQIEAVHAVSWLWRSSDTPIGHAVGAASSRMK---PTTAGPTLKRMSTVLR 409
BLAST of mRNA_L-elsbetiae_contig7573.16473.1 vs. uniprot
Match: A0A6H5KJA9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJA9_9PHAE) HSP 1 Score: 173 bits (438), Expect = 8.590e-46 Identity = 132/335 (39.40%), Postives = 181/335 (54.03%), Query Frame = 3 Query: 285 LDARDCEGRTPLHLAALQGHSEVMSVLMEAGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPLSALSGSNGFEAVPLDAAANNGHSKVVRELIQQVGIKGCAGASGGLDALRAAAMEQHVDIMAILMDAGVVDSGVVLYAAAEWGREAAVKFLLQQRRRRGPIAPNGGLLGYLNFRNPFGSTPLLASVAGVGKTDEGGEPMLLSIKVVRLLIDAGADTSSAVRVTS---GREVLFDDTPLILADDGLR--TKPVGGGDAVEEQFCRLEAIRRLLLRVEAVHALSWLWPKE-PLLVGGAAKGSSSRTARKTPASDGTQLLLVLPILRRRRR 1271 L++R +G TPL+ AA +G+ + +L+ A L+ + +G +PLDAAA NGH +VV ELI+QVGI GC G+SGG+ AL+ AA ++++IM IL +AGVVD+G+ L AA +G E +KFLL+Q R R + Y+N R+ G TPLL + + P +VVRLL++AGADT+S V V + G +V TPL L + +R K VG G A EQ +LEAIRRLLLRVEAVHA+SWLWP + + AA+G+ TA T + LP+L RRR Sbjct: 141 LNSRRSDGATPLYTAAWKGNVDAARLLLLAKADPL--------------------------------LTTVPDPSGRTFLPLDAAAENGHPEVVNELIRQVGIDGCGGSSGGVRALQQAAQFKNLNIMVILTNAGVVDTGLALVVAAGYGGETPLKFLLEQARARKTMDE----AAYVNTRDRGGVTPLLWGI-------QHYRP-----RVVRLLVEAGADTTSPVAVRNQLGGDDVSI--TPLGLTMNPVRDKVKVVGRGPASPEQLHKLEAIRRLLLRVEAVHAVSWLWPSDISTITRAAARGTDRTTAISTA--------VTLPMLVTRRR 417
BLAST of mRNA_L-elsbetiae_contig7573.16473.1 vs. uniprot
Match: D7FVU3_ECTSI (EsV-1-1 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FVU3_ECTSI) HSP 1 Score: 171 bits (433), Expect = 2.440e-45 Identity = 120/260 (46.15%), Postives = 157/260 (60.38%), Query Frame = 3 Query: 498 SGSNGFEAVPLDAAANNGHSKVVRELIQQVGIKGCAGASGGLDALRAAAMEQHVDIMAILMDAGVVDS-GVVLYAAAEWGREAAVKFLLQQRRRRGPIAPNGGLLGYLNF-RNPFGSTPLLASVAGVGKTDEGGEPMLLSIKVVRLLIDAGADTSSAVRVTSGRE-VLFDDTPLILADDGLRTKPVGGGDAVEEQFCRLEAIRRLLLRVEAVHALSWLWPKE-PLLVGGAAKGSSSRTARKTPASDGTQLLLVLPILRRR 1265 S S+G VPL+ AA G S VV EL+++ GI+ C G SGGLDALR AA+ VDIM++LMDAGVVD G+ L AA G+EAAV FLL+Q+ R + Y+N R+ G T LL S G + + ++ R L+DAGADT+SAV++ + R + TPL +D + G A +EQ RLEA RR+LLRV AVHA+SW+WP + PLL A +S RTA+ +P TQL VLP+LRRR Sbjct: 150 SESSGRSFVPLEVAAQTGRSAVVSELLREFGIRCCGGPSGGLDALRVAAVYGQVDIMSMLMDAGVVDPVGLALLAAVGSGKEAAVGFLLRQQEERWQTS-------YVNIARDDDGLTALLWSF-------RGNKNKPCNPRITRRLVDAGADTTSAVQLRAKRSRTCVNVTPLEYVNDWALRETNGDHPATDEQLLRLEATRRVLLRVVAVHAVSWIWPSDAPLL---ARPANSPRTAKHSP----TQLTTVLPVLRRR 388
BLAST of mRNA_L-elsbetiae_contig7573.16473.1 vs. uniprot
Match: D7FVK3_ECTSI (EsV-1-199 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FVK3_ECTSI) HSP 1 Score: 170 bits (430), Expect = 1.450e-44 Identity = 115/254 (45.28%), Postives = 148/254 (58.27%), Query Frame = 3 Query: 513 FEAVPLDAAANNGHSKVVRELIQQVGIKGCAGASGGLDALRAAAMEQHVDIMAILMDAGVVDSGVVLYAAAEWGREAAVKFLLQQRRRRGPIAPNGGLLGYLNFRNPFGSTPLLASVAGVGKTDEGGEPMLLSIKVVRLLIDAGADTSSAVRVTSGREVL-FDDTPLILADDGLRTKPVGGGDAVEEQFCRLEAIRRLLLRVEAVHALSWLWPKEPLLVGGAAKGSSSRTARKTPASDGTQLLLVLPILRRRRR 1271 ++ +PLD AA NG VV EL+Q+ GI+GC G +GG+ AL+ AAM+ H+D+M L AGVVD+G+ L A +G VKFLLQQ+ P+ R+P G TPL+ ++ + G S KVVRLL+DAGADT+S VR T L TPL LA + LR K +E RLE IRRLLLRVEAVHA SWLW VG A G+++ T ++ ++ QL VLPILRRR R Sbjct: 182 WQHLPLDTAAQNGRLGVVLELLQRFGIRGCGGGTGGVTALQLAAMKPHMDVMLALTTAGVVDTGIALVKATSFGHMDVVKFLLQQQNG----TPSEKSAYVSRPRDPCGRTPLICNI-------DVGLNQSCSPKVVRLLVDAGADTTSIVRFTIQPGTLPVVCTPLSLATEALRIKIAYRKAIPDELLRRLELIRRLLLRVEAVHATSWLWQNGVPRVGLPAGGTAA-TETESSSTTAPQLRTVLPILRRRAR 423
BLAST of mRNA_L-elsbetiae_contig7573.16473.1 vs. uniprot
Match: D7G1H7_ECTSI (EsV-1-199 n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G1H7_ECTSI) HSP 1 Score: 168 bits (426), Expect = 4.740e-44 Identity = 116/257 (45.14%), Postives = 154/257 (59.92%), Query Frame = 3 Query: 510 GFEAVPLDAAANNGHSKVVRELIQQVGIKGCAGASGGLDALRAAAMEQHVDIMAILMDAG-VVDSGVVLYAAAEWGREAAVKFLLQQRRRRGPIAPNGGLLGYLNFRNPFGSTPLLASV-AGVGKTDEGGEPMLLSIKVVRLLIDAGADTSSAVRVT--SGREVLFDDTPLILADDGLRTKPVGGGDAVEEQFCRLEAIRRLLLRVEAVHALSWLWPK-EPLLVGGAAKGSSSRTARKTPASDGTQLLLVLPILRRR 1265 G VPL+ AA +G+ V RE+I+QVGI+GC G SGG++ALR AA E+H++ MA+L+DAG VVD+G L AAE GR AVKFLL++R+ NG R+P+G TP++ +V G G+ L S K+VRLL+DAGA+T+ AV VT + R +TPL LR V G A +EQ RL+ R LL R EAVHA+SWLW EP + AA + + TA A T L + P+LRR+ Sbjct: 180 GVSYVPLEMAALHGNPDVAREMIRQVGIRGCGGPSGGVEALRQAADEEHLEFMAVLLDAGGVVDTGPALILAAENGRAVAVKFLLRRRQADADAYVNG-------TRDPYGRTPVMCAVDVGAGR--------LCSPKIVRLLVDAGANTTRAVGVTRITPRWEKTSETPLAFTTRLLREGRVDGEAATKEQLQRLKDTRCLLSRAEAVHAVSWLWASGEPPRIAQAAGDTKTETASTAVA---TPLRAMSPMLRRK 418
BLAST of mRNA_L-elsbetiae_contig7573.16473.1 vs. uniprot
Match: A0A6H5KQV0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KQV0_9PHAE) HSP 1 Score: 167 bits (422), Expect = 2.450e-43 Identity = 132/340 (38.82%), Postives = 177/340 (52.06%), Query Frame = 3 Query: 261 CSASF------GAELDARDCEGRTPLHLAALQGHSEVMSVLMEAGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPLSALSGSNGFEA-VPLDAAANNGHSKVVRELIQQVGIKGCAGASGGLDALRAAAMEQHVDIMAILMDAGVVDSGVVLYAAAEWGREAAVKFLLQQRRRRGPIAPNGGLLGYLNFRNPFGSTPLLASVAGVGKTDEGGEPMLLSIKVVRLLIDAGADTSSAVRVTSGR-EVLFDDTPLILADDGLRTKPVGGGDA----VEEQFCRLEAIRRLLLRVEAVHALSWLWPKE-PLLVGGAAKGSSSRTARKTPASDGTQLLL 1241 C+AS G+ ++ R +G TPL+ AA G+ + +L+ A PL + +G E +PLD AA NGH +VV ELI+QVGI GC G+SGG +ALR AA+ +DIMAIL DAGVVD+G+ L AA +G EA +KFLL+Q R R + Y+N N G T LL + + P +VV+LL++AGADT+S V + + E F TPL GL +GG A +EEQ +LE IRRLLLR EAVHA+SWLWP + P + AKG+ TA T A+ L++ Sbjct: 127 CAASVTALLKAGSNINTRRSDGATPLYTAAWNGNVVAVWLLLLA---------------------------------KADPLLTCASDSGKERFLPLDVAAQNGHREVVNELIRQVGIDGCGGSSGGENALRQAALFSRLDIMAILTDAGVVDTGLALVVAAGYGGEAPLKFLLEQARGR----KSTDRAAYMNTLNGVGLTSLLDGI-------QRCRP-----RVVQLLVEAGADTTSPVLICNQPGEDDFHITPL-----GLTMCLLGGRSAKPLTMEEQN-KLEVIRRLLLREEAVHAVSWLWPSDTPTITHATAKGTGRTTATSTAATPFIMLMI 411
BLAST of mRNA_L-elsbetiae_contig7573.16473.1 vs. uniprot
Match: D8LJF9_ECTSI (EsV-1-199 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LJF9_ECTSI) HSP 1 Score: 163 bits (413), Expect = 2.760e-42 Identity = 115/252 (45.63%), Postives = 152/252 (60.32%), Query Frame = 3 Query: 522 VPLDAAANNGHSKVVRELIQQVGIKGCAGASGGLDALRAAAMEQHVDIMAILMDAGVVDSGVVLYAAAEWGREAAVKFLLQQRRRR-GPIAPNGGLLGYLNFRNPFGSTPLLASVAGVGKTDEGGEPMLLSIKVVRLLIDAGADTSSAVRVTSGREV-LFDDTPLILADDGLRTKPVGGGDAVEEQFCRLEAIRRLLLRVEAVHALSWLWPKEPLLVGGAAKGSSSRTARKTPASDGTQLLLVLPILRRRRR 1271 +PLD+AA NG+ V+RELIQ+VGI+GC G S G AL A + V MA+L AGVVD+G L +A GREA+VK+LLQ + GP A Y+N R+ G+TPLL+S+ G ++ P +V RLL++AGADT++ +R T+ V LF TPL L L+ K V G +++ RLE IRRLLL+VEAVHA SWLWP GG +++ T A+ +L VLPILRRR R Sbjct: 171 LPLDSAARNGNLLVMRELIQRVGIEGCGGQSRGEVALLMAGEGRRVAAMALLTHAGVVDTGQALTISAGLGREASVKYLLQNHAKHYGPGA-------YVNVRDRNGTTPLLSSIYVCGVDEQSSFP-----RVARLLVEAGADTTTELRRTNSMGVVLFSCTPLKLTVHILQDKKVDGTYISKQRLWRLEGIRRLLLQVEAVHAESWLWPSSSG-DGGRRPDNAAEVTTATNAA-APKLGRVLPILRRRAR 408
BLAST of mRNA_L-elsbetiae_contig7573.16473.1 vs. uniprot
Match: D8LL76_ECTSI (EsV-1-199 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LL76_ECTSI) HSP 1 Score: 162 bits (411), Expect = 5.800e-42 Identity = 115/270 (42.59%), Postives = 146/270 (54.07%), Query Frame = 3 Query: 483 PLSALSGSNGFEAVPLDAAANNGHSKVVRELIQQVGIKGCAGASGGLDALRAAAMEQHVDIMAILMDAGVVDSGVVLYAAAEWGREAAVKFLLQQRRRRGPIAPNGGLLGYLNFRNPFGSTPLLASVAGVGKTDEGGEPMLLSI-------KVVRLLIDAGADTSSAVRVTSGREVLFDDTPLILADDGLRTKPVGGGDAVEEQFCRLEAIRRLLLRVEAVHALSWLWPKEPLLVGGAA--KGSSSRTARKTPASDGTQLLLVLPILRRR 1265 PL S+G VPLD AA NGH V REL+Q+ GI+GCAGAS G+DAL AA++QH+D+MA+L DAGVVD+G L A GRE A+KFLL+Q+ G R + STP + G P+L ++ +VVRLL+DAGAD + AVRV G TPL A L K V A +Q L A RRLLL+VE VHA SWLW GG A + + +T +++G L LPI+ RR Sbjct: 170 PLLPTRMSSGNTFVPLDGAALNGHLAVARELVQRFGIRGCAGASAGVDALGQAAVDQHLDVMALLCDAGVVDTGNALVATVFLGRERALKFLLEQK-------------GEGTARTTYASTP---------RDGRGHTPLLSAVTTGPCSPRVVRLLVDAGADATLAVRVPDGFGRSTKYTPLDCATRCLAEKVVDEDFATAQQLRNLRASRRLLLQVEVVHATSWLW-------GGHAGCPAAPGKKRAQTESTNGKPLKSRLPIMWRR 410
BLAST of mRNA_L-elsbetiae_contig7573.16473.1 vs. uniprot
Match: A0A6H5KSA9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KSA9_9PHAE) HSP 1 Score: 157 bits (396), Expect = 1.880e-38 Identity = 105/250 (42.00%), Postives = 144/250 (57.60%), Query Frame = 3 Query: 522 VPLDAAANNGHSKVVRELIQQVGIKGCAGASGGLDALRAAAMEQHVDIMAILMDAGVVDSGVVLYAAAEWGREAAVKFLLQQRRRRGPIAPNGGLLGYLNFRNPFGSTPLLASVAGVGKTDEGGEPMLLSIKVVRLLIDAGADTSSAVRVTSGREV-LFDDTPLILADDGLRTKPVGGGDAVEEQFCRLEAIRRLLLRVEAVHALSWLWPKEPLLVGGAAKGSSSRTARKTPASDGTQLLLVLPILRRRR 1268 +PLDAA + H+ VVR+LIQQ+GI+GC GAS G DA R A Q DI+ +L D G +D+G VL AA++G EA VK LLQQ+R + Y+N + P G TP+ V +G+ G P +V+RL +DAGADT+S VR+T+ V LF TPL LR + G D+ + + C LEA+RR+LL++EA+ A+SW W + L A R K+ + T L L LP R+ R Sbjct: 348 LPLDAAVISKHAAVVRKLIQQLGIQGCGGASAGADASRWAVQTQQYDIVVMLADTGEIDTGRVLIDAAKFGSEALVKILLQQQRGKHMDWDT-----YVNKKQPDGRTPV---VCRIGRALRSGSP-----RVLRLFLDAGADTASTVRITNKEGVQLFRGTPLAYTTWLLRDQQARGIDSTKGEPCSLEAVRRMLLQLEAIRAVSWCWQSDALSSIERAV-QDGRPRAKSRLTVDTPLGLTLPRRRKAR 583 The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig7573.16473.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_L-elsbetiae_contig7573.16473.1 >prot_L-elsbetiae_contig7573.16473.1 ID=prot_L-elsbetiae_contig7573.16473.1|Name=mRNA_L-elsbetiae_contig7573.16473.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=306bp MSVLMEAGANVDSPATNGRTPLYMAAYGGRVDAIEKLLRANANPLSALSGback to top mRNA from alignment at L-elsbetiae_contig7573:8179..9449+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_L-elsbetiae_contig7573.16473.1 ID=mRNA_L-elsbetiae_contig7573.16473.1|Name=mRNA_L-elsbetiae_contig7573.16473.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1271bp|location=Sequence derived from alignment at L-elsbetiae_contig7573:8179..9449+ (Laminarionema elsbetiae ELsaHSoW15)back to top Coding sequence (CDS) from alignment at L-elsbetiae_contig7573:8179..9449+ >mRNA_L-elsbetiae_contig7573.16473.1 ID=mRNA_L-elsbetiae_contig7573.16473.1|Name=mRNA_L-elsbetiae_contig7573.16473.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1836bp|location=Sequence derived from alignment at L-elsbetiae_contig7573:8179..9449+ (Laminarionema elsbetiae ELsaHSoW15)back to top |