mRNA_L-elsbetiae_contig7563.16463.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig7563.16463.1
Unique NamemRNA_L-elsbetiae_contig7563.16463.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig7563.16463.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig7563contigL-elsbetiae_contig7563:8397..8877 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Exons2
Model size469
Cds size237
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig7563.16463.1prot_L-elsbetiae_contig7563.16463.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig7563 8497..8745 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816840.3351648-UTR-L-elsbetiae_contig7563:8396..84961622816840.3351648-UTR-L-elsbetiae_contig7563:8396..8496Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig7563 8397..8496 +
1691683853.5096397-UTR-L-elsbetiae_contig7563:8396..84961691683853.5096397-UTR-L-elsbetiae_contig7563:8396..8496Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig7563 8397..8496 +
1622816840.3678992-UTR-L-elsbetiae_contig7563:8745..88771622816840.3678992-UTR-L-elsbetiae_contig7563:8745..8877Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig7563 8746..8877 +
1691683853.5384512-UTR-L-elsbetiae_contig7563:8745..88771691683853.5384512-UTR-L-elsbetiae_contig7563:8745..8877Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig7563 8746..8877 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816840.3474622-CDS-L-elsbetiae_contig7563:8496..86951622816840.3474622-CDS-L-elsbetiae_contig7563:8496..8695Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7563 8497..8695 +
1691683853.5186203-CDS-L-elsbetiae_contig7563:8496..86951691683853.5186203-CDS-L-elsbetiae_contig7563:8496..8695Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7563 8497..8695 +
1622816840.3577874-CDS-L-elsbetiae_contig7563:8707..87451622816840.3577874-CDS-L-elsbetiae_contig7563:8707..8745Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7563 8708..8745 +
1691683853.5282953-CDS-L-elsbetiae_contig7563:8707..87451691683853.5282953-CDS-L-elsbetiae_contig7563:8707..8745Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7563 8708..8745 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig7563.16463.1

>prot_L-elsbetiae_contig7563.16463.1 ID=prot_L-elsbetiae_contig7563.16463.1|Name=mRNA_L-elsbetiae_contig7563.16463.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=79bp
MAFRILYSDFAPSTASICLHDFFAILALASTMSSTFDATSLLFFNTSSTS
ATLFIYYRCRSREPCTFRPASENVTLFQ*
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mRNA from alignment at L-elsbetiae_contig7563:8397..8877+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig7563.16463.1 ID=mRNA_L-elsbetiae_contig7563.16463.1|Name=mRNA_L-elsbetiae_contig7563.16463.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=481bp|location=Sequence derived from alignment at L-elsbetiae_contig7563:8397..8877+ (Laminarionema elsbetiae ELsaHSoW15)
GTGCCCCCGTCACAGAAAATATCTGCGCGCCCCCCGAATTTGACAAGACT
GCCCCGTGACGCCAATACCGACTACCGCACTTTACTTGTTGGCAAATTGT
ATGGCCTTCCGCATTTTGTACAGCGATTTTGCCCCATCTACGGCGTCGAT
TTGTTTGCACGATTTCTTCGCGATTTTAGCGCTGGCCTCCACGATGTCAT
CGACCTTTGATGCCACATCTTTGCTCTTCTTCAATACGTCGTCAACGTCA
GCAACCTTATTTATTTACTACCGGTGTCGCTCACGAGAGCCTTGTACTTG
CTTGCGTACAGTCCGACCTGCGTCCGAAAACGTGACCCTTTTCCAATAAT
ATAACCCCTATTGATTTTGGTATGTTGCCGATATCAGTCAGTACGATTGT
GGTGCTTGGATATCAGTGAGTACGATCTGTGTGTCCCCTCAGGGGGTTAC
GTGTGTTTGTGGGTATGTGATTGTGTGCACC
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Coding sequence (CDS) from alignment at L-elsbetiae_contig7563:8397..8877+

>mRNA_L-elsbetiae_contig7563.16463.1 ID=mRNA_L-elsbetiae_contig7563.16463.1|Name=mRNA_L-elsbetiae_contig7563.16463.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=474bp|location=Sequence derived from alignment at L-elsbetiae_contig7563:8397..8877+ (Laminarionema elsbetiae ELsaHSoW15)
ATGGCCTTCCGCATTTTGTACAGCGATTTTGCCCCATCTACGGCGTCGAT
TTGTTTGCACGATTTCTTCGCGATTTTAGCGCTGGCCTCCACGATGTCAT
CGACCTTTGATGCCACATCTTTGCTCTTCTTCAATACGTCGTCAACGTCA
GCAACCTTATTTATTTACTACCGGTGTCGCTCACGAGAGCCTTGTACTTA
TGGCCTTCCGCATTTTGTACAGCGATTTTGCCCCATCTACGGCGTCGATT
TGTTTGCACGATTTCTTCGCGATTTTAGCGCTGGCCTCCACGATGTCATC
GACCTTTGATGCCACATCTTTGCTCTTCTTCAATACGTCGTCAACGTCAG
CAACCTTATTTATTTACTACCGGTGTCGCTCACGAGAGCCTTGTACTTTC
CGACCTGCGTCCGAAAACGTGACCCTTTTCCAATAATCCGACCTGCGTCC
GAAAACGTGACCCTTTTCCAATAA
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