mRNA_L-elsbetiae_contig7562.16461.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15
Overview
Homology
BLAST of mRNA_L-elsbetiae_contig7562.16461.1 vs. uniprot
Match: A0A6H5JSE9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JSE9_9PHAE) HSP 1 Score: 224 bits (570), Expect = 3.950e-65 Identity = 113/133 (84.96%), Postives = 118/133 (88.72%), Query Frame = 2 Query: 47 EAGAAATRRP-SSCPDHALPAARAFFDFEAVSGLEMRMLPEFFTGRSASKTPEMYVQSRNYMVRSYQRMLEADTDDGQAFLTGTECRRKLAGDACSILRIHDFLDRFGLINTRAAGKRPASFPLAPPSTHLWN 442 E GA RR S CPDHALP AR FFDFEAVS LEMRMLPEFFTGRSASKTPEMY+QSRNYMVRSYQRMLE D D GQAFLTGTECRRKLAGDACSILRIHDFLDRFGLINTRA G+RPAS+ +APP+THLWN Sbjct: 538 EEGAGEERRTISQCPDHALPVARTFFDFEAVSDLEMRMLPEFFTGRSASKTPEMYMQSRNYMVRSYQRMLEVDPD-GQAFLTGTECRRKLAGDACSILRIHDFLDRFGLINTRAVGQRPASYSIAPPATHLWN 669
BLAST of mRNA_L-elsbetiae_contig7562.16461.1 vs. uniprot
Match: D8LMT8_ECTSI (Internalin protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LMT8_ECTSI) HSP 1 Score: 214 bits (545), Expect = 5.540e-63 Identity = 109/141 (77.30%), Postives = 115/141 (81.56%), Query Frame = 2 Query: 17 DNKGKGKERVEAGAAATRRPSSCPDHALPAARAFFDFEAVSGLEMRMLPEFFTGRSASKTPEMYVQSRNYMVRSYQRMLEADTDDGQAFLTGTECRRKLAGDACSILRIHDFLDRFGLINTRAAGKRPASFPLAPPSTHLW 439 ++KGK E R S CPDHALP AR FFDFEAVSGLEMRMLPEFFTGRSASKTPEMY+QSRNYMVRSYQRMLE D D GQAFL GTECRRKLAGDACSILRIHDFL RF L+NTR GKRPAS+ LAPP+ HLW Sbjct: 411 EDKGKXXXAEEGAGEEKRTTSPCPDHALPVARTFFDFEAVSGLEMRMLPEFFTGRSASKTPEMYMQSRNYMVRSYQRMLEVDPD-GQAFLMGTECRRKLAGDACSILRIHDFLHRFRLLNTRTVGKRPASYSLAPPAPHLW 550
BLAST of mRNA_L-elsbetiae_contig7562.16461.1 vs. uniprot
Match: A0A2G9RJT8_LITCT (SWIRM domain-containing protein (Fragment) n=5 Tax=Ranidae TaxID=8397 RepID=A0A2G9RJT8_LITCT) HSP 1 Score: 100 bits (249), Expect = 1.040e-23 Identity = 51/112 (45.54%), Postives = 75/112 (66.96%), Query Frame = 2 Query: 98 LPAARAFFDFEAVSGLEMRMLPEFFTGRSASKTPEMYVQSRNYMVRSYQRMLEADTDDGQAFLTGTECRRKLAGDACSILRIHDFLDRFGLINTRA-AGKRPASFPLAPPST 430 +P+ A+FD+ +V +E R LPEFF G++ SKTPE+Y+ RN+M+ +Y+ + Q +LT T CRR LAGD C+I+R+H FL+++GLIN + A RP P+ PP T Sbjct: 33 IPSYAAWFDYNSVHAIERRALPEFFNGKNKSKTPEIYLAYRNFMIDTYRL-------NPQEYLTSTACRRNLAGDVCAIMRVHAFLEQWGLINYQVDAESRPT--PMGPPPT 135
BLAST of mRNA_L-elsbetiae_contig7562.16461.1 vs. uniprot
Match: A0A3P7M123_STRVU (SWIRM domain-containing protein (Fragment) n=1 Tax=Strongylus vulgaris TaxID=40348 RepID=A0A3P7M123_STRVU) HSP 1 Score: 99.0 bits (245), Expect = 2.120e-23 Identity = 52/112 (46.43%), Postives = 76/112 (67.86%), Query Frame = 2 Query: 98 LPAARAFFDFEAVSGLEMRMLPEFFTGRSASKTPEMYVQSRNYMVRSYQRMLEADTDDGQAFLTGTECRRKLAGDACSILRIHDFLDRFGLINTRA-AGKRPASFPLAPPST 430 +P+ ++FD+ AV +E R +PEFF GR+ SKTPE+Y+ RN+MV +Y+ + +L+ T CRR LAGD CSI+R+H FL+++GLIN + + RPA P+APP T Sbjct: 53 VPSYASWFDYNAVHQIEKRAVPEFFNGRNKSKTPEVYLSYRNFMVDTYRL-------NPFEYLSATACRRNLAGDVCSIVRVHSFLEQWGLINYQVDSDARPA--PIAPPPT 155
BLAST of mRNA_L-elsbetiae_contig7562.16461.1 vs. uniprot
Match: A0A3P7XWS7_9BILA (SWIRM domain-containing protein n=2 Tax=Onchocerca flexuosa TaxID=387005 RepID=A0A3P7XWS7_9BILA) HSP 1 Score: 97.1 bits (240), Expect = 5.870e-23 Identity = 51/112 (45.54%), Postives = 75/112 (66.96%), Query Frame = 2 Query: 98 LPAARAFFDFEAVSGLEMRMLPEFFTGRSASKTPEMYVQSRNYMVRSYQRMLEADTDDGQAFLTGTECRRKLAGDACSILRIHDFLDRFGLINTRA-AGKRPASFPLAPPST 430 +P+ A+FD+ A+ +E R +PEFF GR+ SK+PE+Y+ RN+M+ +Y+ + +L+ T CRR L GD CSILR+H FL+++GLIN + A RPA P+APP T Sbjct: 15 IPSYAAWFDYNAIHQIEKRGVPEFFNGRNKSKSPEVYMAYRNFMIDTYRL-------NPFEYLSSTACRRNLGGDVCSILRVHSFLEQWGLINYQVDAEARPA--PVAPPCT 117
BLAST of mRNA_L-elsbetiae_contig7562.16461.1 vs. uniprot
Match: A0A7L2UIE3_BALRX (SMRC2 protein (Fragment) n=13 Tax=Neognathae TaxID=8825 RepID=A0A7L2UIE3_BALRX) HSP 1 Score: 100 bits (249), Expect = 9.200e-23 Identity = 51/112 (45.54%), Postives = 75/112 (66.96%), Query Frame = 2 Query: 98 LPAARAFFDFEAVSGLEMRMLPEFFTGRSASKTPEMYVQSRNYMVRSYQRMLEADTDDGQAFLTGTECRRKLAGDACSILRIHDFLDRFGLINTRA-AGKRPASFPLAPPST 430 +P+ A+FD+ +V +E R LPEFF G++ SKTPE+Y+ RN+M+ +Y+ + Q +LT T CRR LAGD C+I+R+H FL+++GLIN + A RP P+ PP T Sbjct: 118 IPSYAAWFDYNSVHAIERRALPEFFNGKNKSKTPEIYLAYRNFMIDTYRL-------NPQEYLTSTACRRNLAGDVCAIMRVHAFLEQWGLINYQVDAESRPT--PMGPPPT 220
BLAST of mRNA_L-elsbetiae_contig7562.16461.1 vs. uniprot
Match: A0A654HHF0_9CEST (Uncharacterized protein n=2 Tax=Diphyllobothriidae TaxID=28843 RepID=A0A654HHF0_9CEST) HSP 1 Score: 103 bits (256), Expect = 1.030e-22 Identity = 53/107 (49.53%), Postives = 72/107 (67.29%), Query Frame = 2 Query: 98 LPAARAFFDFEAVSGLEMRMLPEFFTGRSASKTPEMYVQSRNYMVRSYQRMLEADTDDGQAFLTGTECRRKLAGDACSILRIHDFLDRFGLINTRAAGKRPASFPLA 418 +P+ A+FD+ A+ G+E R LPEFF GR+ SKTPE+Y+ RN+MV +Y+ + Q +LT T CRR L GD CSILR+H FL+++GLIN + A AS P A Sbjct: 510 IPSYSAWFDYNAIHGIERRALPEFFNGRNKSKTPEVYLAYRNFMVDTYRL-------NPQEYLTFTACRRNLTGDVCSILRVHAFLEQWGLINYQLAAPLFASGPAA 609
BLAST of mRNA_L-elsbetiae_contig7562.16461.1 vs. uniprot
Match: UPI0015603D74 (LOW QUALITY PROTEIN: SWI/SNF complex subunit SMARCC2 n=2 Tax=Acipenseroidei TaxID=186622 RepID=UPI0015603D74) HSP 1 Score: 102 bits (254), Expect = 1.860e-22 Identity = 50/114 (43.86%), Postives = 75/114 (65.79%), Query Frame = 2 Query: 98 LPAARAFFDFEAVSGLEMRMLPEFFTGRSASKTPEMYVQSRNYMVRSYQRMLEADTDDGQAFLTGTECRRKLAGDACSILRIHDFLDRFGLINTRA-AGKRPASFPLAPPSTHL 436 +P+ A+FD+ +V +E R LPEFF G++ SKTPE+Y+ RN+M+ +Y+ + Q +LT T CRR LAGD C+I+R+H FL+++GLIN + A RP PP++H Sbjct: 425 IPSYAAWFDYSSVHAIERRALPEFFNGKNKSKTPEIYLAYRNFMIDTYRL-------NPQEYLTSTACRRNLAGDVCAIMRVHAFLEQWGLINYQVDAESRPTPMGRPPPTSHF 531
BLAST of mRNA_L-elsbetiae_contig7562.16461.1 vs. uniprot
Match: UPI001F04F190 (SWI/SNF complex subunit SMARCC1-like n=1 Tax=Xenia sp. Carnegie-2017 TaxID=2897299 RepID=UPI001F04F190) HSP 1 Score: 102 bits (254), Expect = 1.880e-22 Identity = 53/112 (47.32%), Postives = 76/112 (67.86%), Query Frame = 2 Query: 98 LPAARAFFDFEAVSGLEMRMLPEFFTGRSASKTPEMYVQSRNYMVRSYQRMLEADTDDGQAFLTGTECRRKLAGDACSILRIHDFLDRFGLINTRA-AGKRPASFPLAPPST 430 +P+ ++FD+ ++ +E R LPEFF G++ SKTPE+Y+ RN+M+ SY R+ D +LT T CRR LAGD CSILR+H FL+++GL+N + A RP P+ PPST Sbjct: 446 VPSYSSWFDYNSIHAIERRALPEFFNGKNKSKTPEIYLAYRNFMIDSY-RLNPTD------YLTATACRRNLAGDVCSILRVHAFLEQWGLVNYQVDADSRPT--PMGPPST 548
BLAST of mRNA_L-elsbetiae_contig7562.16461.1 vs. uniprot
Match: A0A4W3GTU1_CALMI (Uncharacterized protein n=1 Tax=Callorhinchus milii TaxID=7868 RepID=A0A4W3GTU1_CALMI) HSP 1 Score: 100 bits (249), Expect = 2.290e-22 Identity = 51/112 (45.54%), Postives = 75/112 (66.96%), Query Frame = 2 Query: 98 LPAARAFFDFEAVSGLEMRMLPEFFTGRSASKTPEMYVQSRNYMVRSYQRMLEADTDDGQAFLTGTECRRKLAGDACSILRIHDFLDRFGLINTRA-AGKRPASFPLAPPST 430 +P+ A+FD+ +V +E R LPEFF G++ SKTPE+Y+ RN+M+ +Y+ + Q +LT T CRR LAGD C+I+R+H FL+++GLIN + A RP P+ PP T Sbjct: 84 IPSYAAWFDYNSVHAIERRALPEFFNGKNKSKTPEIYLAYRNFMIDTYRL-------NPQEYLTSTACRRNLAGDVCAIMRVHAFLEQWGLINYQVDAESRPT--PMGPPPT 186 The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig7562.16461.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_L-elsbetiae_contig7562.16461.1 >prot_L-elsbetiae_contig7562.16461.1 ID=prot_L-elsbetiae_contig7562.16461.1|Name=mRNA_L-elsbetiae_contig7562.16461.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=149bp RREGCRQQGEGEGKGRGGGSGDEKTQLVPRPRVAGGPGVLRLRGGQRPGDback to top mRNA from alignment at L-elsbetiae_contig7562:2126..4316- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_L-elsbetiae_contig7562.16461.1 ID=mRNA_L-elsbetiae_contig7562.16461.1|Name=mRNA_L-elsbetiae_contig7562.16461.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=2191bp|location=Sequence derived from alignment at L-elsbetiae_contig7562:2126..4316- (Laminarionema elsbetiae ELsaHSoW15)back to top Coding sequence (CDS) from alignment at L-elsbetiae_contig7562:2126..4316- >mRNA_L-elsbetiae_contig7562.16461.1 ID=mRNA_L-elsbetiae_contig7562.16461.1|Name=mRNA_L-elsbetiae_contig7562.16461.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=894bp|location=Sequence derived from alignment at L-elsbetiae_contig7562:2126..4316- (Laminarionema elsbetiae ELsaHSoW15)back to top |