mRNA_L-elsbetiae_contig7561.16459.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig7561.16459.1
Unique NamemRNA_L-elsbetiae_contig7561.16459.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
BLAST of mRNA_L-elsbetiae_contig7561.16459.1 vs. uniprot
Match: D8LQB5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LQB5_ECTSI)

HSP 1 Score: 120 bits (300), Expect = 2.330e-31
Identity = 62/68 (91.18%), Postives = 65/68 (95.59%), Query Frame = 1
Query:   46 GIEARSVCAFGREPRTIVLISEDGSFLTARFSEPGECERISYARFLRGAGGGSDDEGDDDIGRGNGDG 249
            GIEARSVCAFGREPRTIVLISEDGSFLTARFSEPGECERISYARFLRGAG GSDDEGD++I R NG+G
Sbjct:   29 GIEARSVCAFGREPRTIVLISEDGSFLTARFSEPGECERISYARFLRGAGAGSDDEGDEEITRANGEG 96          
BLAST of mRNA_L-elsbetiae_contig7561.16459.1 vs. uniprot
Match: A0A835Z323_9STRA (WD40-repeat-containing domain protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z323_9STRA)

HSP 1 Score: 111 bits (277), Expect = 6.400e-27
Identity = 51/77 (66.23%), Postives = 63/77 (81.82%), Query Frame = 1
Query:    1 LPAYFNSEWSYAQIRGIEARSVCAFGREPRTIVLISEDGSFLTARFSEPGECERISYARFLRGAGGGSDDEGDDDIG 231
            +P YF+SEWSYAQ+RG+E+RS+CAFG EP TIV++S DGSFL ARF EPGECER+SYA+F+RG      DE  DD+G
Sbjct:  304 VPKYFSSEWSYAQVRGVESRSICAFGAEPNTIVVVSADGSFLLARFDEPGECERVSYAKFIRGP----TDEALDDMG 376          
BLAST of mRNA_L-elsbetiae_contig7561.16459.1 vs. uniprot
Match: A0A7S2CPD6_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2CPD6_9STRA)

HSP 1 Score: 99.8 bits (247), Expect = 8.550e-23
Identity = 41/74 (55.41%), Postives = 61/74 (82.43%), Query Frame = 1
Query:    1 LPAYFNSEWSYAQIRGIEARSVCAFGREPRTIVLISEDGSFLTARFSEPGECERISYARFLRGAGGGSDDEGDD 222
            +P Y  SEWS+AQ+RG+E+ ++CAFG++PRT++++S DGS+L + F+EPGECER+SYARF+R A    ++E DD
Sbjct:  309 IPKYVESEWSFAQVRGLESTTICAFGQDPRTLIVVSADGSYLLSSFAEPGECERVSYARFIRSA---EEEEADD 379          
BLAST of mRNA_L-elsbetiae_contig7561.16459.1 vs. uniprot
Match: A0A7S2CSM6_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2CSM6_9STRA)

HSP 1 Score: 94.0 bits (232), Expect = 1.020e-20
Identity = 37/62 (59.68%), Postives = 53/62 (85.48%), Query Frame = 1
Query:    1 LPAYFNSEWSYAQIRGIEARSVCAFGREPRTIVLISEDGSFLTARFSEPGECERISYARFLR 186
            +P Y  SEWS+AQIRG+E+RS+CAFG+EP T++++S +GS+L + F++PGECERI  ARF+R
Sbjct:  308 IPKYVESEWSFAQIRGLESRSICAFGQEPNTLIVVSANGSYLMSSFAQPGECERIHMARFMR 369          
BLAST of mRNA_L-elsbetiae_contig7561.16459.1 vs. uniprot
Match: A0A7S2SQE7_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2SQE7_9STRA)

HSP 1 Score: 94.4 bits (233), Expect = 1.050e-20
Identity = 37/63 (58.73%), Postives = 53/63 (84.13%), Query Frame = 1
Query:    1 LPAYFNSEWSYAQIRGIEARSVCAFGREPRTIVLISEDGSFLTARFSEPGECERISYARFLRG 189
            +P Y +SEWS+AQ+R +E R++CAFG +P TI+++  DGS+L + F+EPGECE+ISYARF+RG
Sbjct:  339 VPKYVDSEWSFAQVRHVEGRTICAFGSKPNTIIVVGMDGSYLLSSFAEPGECEKISYARFIRG 401          
BLAST of mRNA_L-elsbetiae_contig7561.16459.1 vs. uniprot
Match: A0A7S3HCS3_9STRA (Hypothetical protein n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3HCS3_9STRA)

HSP 1 Score: 90.5 bits (223), Expect = 2.110e-19
Identity = 37/62 (59.68%), Postives = 50/62 (80.65%), Query Frame = 1
Query:    1 LPAYFNSEWSYAQIRGIEARSVCAFGREPRTIVLISEDGSFLTARFSEPGECERISYARFLR 186
            +P YF SEWS+AQ+RGIE RS+CAFG++P  IV++S DG+F+ + F E G+C RIS A+FLR
Sbjct:  349 VPKYFESEWSFAQVRGIEGRSICAFGKDPSRIVVVSADGTFIVSSFDEGGDCARISTAKFLR 410          
BLAST of mRNA_L-elsbetiae_contig7561.16459.1 vs. uniprot
Match: A0A8J2SBH4_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2SBH4_9STRA)

HSP 1 Score: 83.6 bits (205), Expect = 7.110e-17
Identity = 31/60 (51.67%), Postives = 48/60 (80.00%), Query Frame = 1
Query:    7 AYFNSEWSYAQIRGIEARSVCAFGREPRTIVLISEDGSFLTARFSEPGECERISYARFLR 186
            AY  SEWS+AQ+RG+ A ++CAFG+ P T+V +  DG+FL +RF++ GECER+++ RF++
Sbjct:  306 AYLESEWSFAQVRGVHAPTICAFGKTPNTVVSVGADGAFLVSRFADGGECERVAFHRFIK 365          
BLAST of mRNA_L-elsbetiae_contig7561.16459.1 vs. uniprot
Match: A0A397A0A0_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A397A0A0_9STRA)

HSP 1 Score: 77.4 bits (189), Expect = 8.950e-16
Identity = 32/62 (51.61%), Postives = 45/62 (72.58%), Query Frame = 1
Query:    1 LPAYFNSEWSYAQIRGIEARSVCAFGREPRTIVLISEDGSFLTARFSEPGECERISYARFLR 186
            LP YF+SEWS+AQ +  E R++CAFG +  TI+++  DGSF  A F   GECER SY++F++
Sbjct:  122 LPKYFSSEWSFAQFKVPETRTICAFGMDKNTILVVGADGSFYKAVFDANGECERTSYSKFIQ 183          
BLAST of mRNA_L-elsbetiae_contig7561.16459.1 vs. uniprot
Match: A0A7S3XN66_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XN66_HETAK)

HSP 1 Score: 78.2 bits (191), Expect = 1.410e-15
Identity = 33/58 (56.90%), Postives = 43/58 (74.14%), Query Frame = 1
Query:   10 YFNSEWSYAQIRGIEARSVCAFGREPRTIVLISEDGSFLTARFSEPGECERISYARFL 183
            YF+SEWS+AQ+RGI+  SVCAFG +P T+ +IS DGSF    F + GE E+I YA F+
Sbjct:  154 YFSSEWSFAQVRGIDPNSVCAFGSQPNTLAIISADGSFRMVNFEKGGESEQIYYANFI 211          
BLAST of mRNA_L-elsbetiae_contig7561.16459.1 vs. uniprot
Match: A0A7S3JWF9_9STRA (Hypothetical protein n=1 Tax=Aureoumbra lagunensis TaxID=44058 RepID=A0A7S3JWF9_9STRA)

HSP 1 Score: 79.7 bits (195), Expect = 1.530e-15
Identity = 31/59 (52.54%), Postives = 46/59 (77.97%), Query Frame = 1
Query:    7 AYFNSEWSYAQIRGIEARSVCAFGREPRTIVLISEDGSFLTARFSEPGECERISYARFL 183
            +Y  SEWS+AQ+ G+EA ++CAFG +P T+VL+  DGSFL + F+  GE ER+++A+FL
Sbjct:  335 SYLESEWSFAQVHGLEAPTICAFGTQPNTLVLVGADGSFLVSNFARGGEAERLTFAKFL 393          
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig7561.16459.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LQB5_ECTSI2.330e-3191.18Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A835Z323_9STRA6.400e-2766.23WD40-repeat-containing domain protein n=1 Tax=Trib... [more]
A0A7S2CPD6_9STRA8.550e-2355.41Hypothetical protein n=1 Tax=Florenciella parvula ... [more]
A0A7S2CSM6_9STRA1.020e-2059.68Hypothetical protein n=1 Tax=Dictyocha speculum Ta... [more]
A0A7S2SQE7_9STRA1.050e-2058.73Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A7S3HCS3_9STRA2.110e-1959.68Hypothetical protein n=1 Tax=Spumella elongata Tax... [more]
A0A8J2SBH4_9STRA7.110e-1751.67Hypothetical protein n=1 Tax=Pelagomonas calceolat... [more]
A0A397A0A0_9STRA8.950e-1651.61Uncharacterized protein (Fragment) n=1 Tax=Aphanom... [more]
A0A7S3XN66_HETAK1.410e-1556.90Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
A0A7S3JWF9_9STRA1.530e-1552.54Hypothetical protein n=1 Tax=Aureoumbra lagunensis... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig7561contigL-elsbetiae_contig7561:2605..3460 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score78.6
Seed ortholog evalue1.6e-12
Seed eggNOG ortholog112098.XP_008617998.1
Preferred nameWDR45B
KEGG koko:K08876
Hectar predicted targeting categoryother localisation
GOsGO:0000045,GO:0000407,GO:0000422,GO:0001101,GO:0003674,GO:0005488,GO:0005543,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005829,GO:0006464,GO:0006497,GO:0006807,GO:0006914,GO:0006950,GO:0006952,GO:0006970,GO:0006979,GO:0006996,GO:0007005,GO:0007033,GO:0007275,GO:0007568,GO:0008104,GO:0008150,GO:0008152,GO:0008289,GO:0009056,GO:0009058,GO:0009059,GO:0009414,GO:0009415,GO:0009605,GO:0009607,GO:0009620,GO:0009628,GO:0009651,GO:0009893,GO:0009894,GO:0009896,GO:0009987,GO:0009991,GO:0010035,GO:0010150,GO:0010506,GO:0010508,GO:0016020,GO:0016043,GO:0016236,GO:0019222,GO:0019538,GO:0019898,GO:0022411,GO:0022607,GO:0031323,GO:0031325,GO:0031329,GO:0031331,GO:0031667,GO:0032266,GO:0032501,GO:0032502,GO:0033036,GO:0034045,GO:0034497,GO:0034613,GO:0034645,GO:0035091,GO:0036211,GO:0042157,GO:0042158,GO:0042221,GO:0042594,GO:0043167,GO:0043168,GO:0043170,GO:0043207,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043412,GO:0044085,GO:0044237,GO:0044238,GO:0044248,GO:0044249,GO:0044260,GO:0044267,GO:0044424,GO:0044425,GO:0044444,GO:0044464,GO:0044804,GO:0048366,GO:0048367,GO:0048518,GO:0048522,GO:0048731,GO:0048827,GO:0048856,GO:0050789,GO:0050794,GO:0050832,GO:0050896,GO:0051179,GO:0051641,GO:0051704,GO:0051707,GO:0061726,GO:0061919,GO:0065007,GO:0070727,GO:0070925,GO:0071704,GO:0071840,GO:0080025,GO:0090693,GO:0098542,GO:0098805,GO:0099402,GO:1901564,GO:1901566,GO:1901576,GO:1901700,GO:1901981,GO:1902936,GO:1903008,GO:1905037
EggNOG free text desc.phosphatidylinositol-3,5-bisphosphate binding
EggNOG OGsKOG2111@1,KOG2111@2759
COG Functional cat.J
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01001,ko03016
Ec32 ortholog descriptionconserved unknown protein
Ec32 orthologEc-26_005420.1
Exons2
Model size261
Cds size261
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816840.1349757-CDS-L-elsbetiae_contig7561:2604..26431622816840.1349757-CDS-L-elsbetiae_contig7561:2604..2643Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7561 2605..2643 +
1691683853.391369-CDS-L-elsbetiae_contig7561:2604..26431691683853.391369-CDS-L-elsbetiae_contig7561:2604..2643Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7561 2605..2643 +
1622816840.147578-CDS-L-elsbetiae_contig7561:3238..34601622816840.147578-CDS-L-elsbetiae_contig7561:3238..3460Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7561 3239..3460 +
1691683853.4061494-CDS-L-elsbetiae_contig7561:3238..34601691683853.4061494-CDS-L-elsbetiae_contig7561:3238..3460Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7561 3239..3460 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig7561.16459.1prot_L-elsbetiae_contig7561.16459.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig7561 2605..3460 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig7561.16459.1

>prot_L-elsbetiae_contig7561.16459.1 ID=prot_L-elsbetiae_contig7561.16459.1|Name=mRNA_L-elsbetiae_contig7561.16459.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=87bp
LPAYFNSEWSYAQIRGIEARSVCAFGREPRTIVLISEDGSFLTARFSEPG
ECERISYARFLRGAGGGSDDEGDDDIGRGNGDGGSGG
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mRNA from alignment at L-elsbetiae_contig7561:2605..3460+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig7561.16459.1 ID=mRNA_L-elsbetiae_contig7561.16459.1|Name=mRNA_L-elsbetiae_contig7561.16459.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=856bp|location=Sequence derived from alignment at L-elsbetiae_contig7561:2605..3460+ (Laminarionema elsbetiae ELsaHSoW15)
CTGCCGGCCTACTTTAACTCGGAATGGAGCTACGCTCAGGTCAGGTGCTT TGCCTGTCCGGCGGGCCGCCCTTAAGGCTGCAGTTGTTGGTGTGCAGTCA GCCGGCCACAGCAGTCGTGCCACCCTCTTCGGTAGGCTTGGATCGGAGGC AAGGGGGGGGGGGGGGAGAGGGGGGCGGAGGCCGACCCGTCGCTCTCGCG TTCAAGGGGGAGAGACCTGACCTCCATAACCGGTGATGACGTCATGATGG TCGTTGTCTTCCTCGTGTGTAGAGAGCGATGCATGCATGCATGCATGCCG CTCAACCGCTGTCTTAGGCACGTGTGCATCCGAGCAGGGCTACGCAGACA GCCGTGTGTGTAGGTATGTAGCGGCACCACTCACCTTTTTTTGTTGCGTC GTGTGGTTTGGGTCTCCAGGTCGACAAGCAAAGCTCTCCTTTTTACCTCC GCCACACTGACACTGCTGCTGTACACAGCAGCATCTCGAAGAAGATGCGC GGTTGACGGCCATGGCGAAGACCAGCAGTAAAAGTTAAAAAAAAAGATAC CCCCCCCCTCACCCCCCCCCGTCACCCCCGCCCGTCACCCCCGCCCGTCA CCCCCGCCGCCGTCCCTCTCCTGACCTGTTTCAGATCCGAGGTATCGAGG CACGCTCGGTCTGCGCGTTTGGGAGGGAGCCCCGCACAATCGTCCTCATC AGCGAGGACGGGTCTTTCCTGACGGCCAGGTTCTCGGAGCCCGGCGAGTG CGAGCGGATCAGCTACGCCCGCTTCCTGCGCGGCGCCGGTGGCGGCAGTG ACGACGAGGGTGACGACGACATCGGCAGGGGGAACGGGGACGGCGGCAGT GGCGGC
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Coding sequence (CDS) from alignment at L-elsbetiae_contig7561:2605..3460+

>mRNA_L-elsbetiae_contig7561.16459.1 ID=mRNA_L-elsbetiae_contig7561.16459.1|Name=mRNA_L-elsbetiae_contig7561.16459.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=522bp|location=Sequence derived from alignment at L-elsbetiae_contig7561:2605..3460+ (Laminarionema elsbetiae ELsaHSoW15)
CTGCCGGCCTACTTTAACTCGGAATGGAGCTACGCTCAGCTGCCGGCCTA
CTTTAACTCGGAATGGAGCTACGCTCAGATCCGAGGTATCGAGGCACGCT
CGGTCTGCGCGTTTGGGAGGGAGCCCCGCACAATCGTCCTCATCAGCGAG
GACGGGTCTTTCCTGACGGCCAGGTTCTCGGAGCCCGGCGAGTGCGAGCG
GATCAGCTACGCCCGCTTCCTGCGCGGCGCCGGTGGCGGCAGTGACGACG
AGGGTGACGACGACATCGGCAGGGGGAACGGGGACGGCGGCAGTGGCGGC
ATCCGAGGTATCGAGGCACGCTCGGTCTGCGCGTTTGGGAGGGAGCCCCG
CACAATCGTCCTCATCAGCGAGGACGGGTCTTTCCTGACGGCCAGGTTCT
CGGAGCCCGGCGAGTGCGAGCGGATCAGCTACGCCCGCTTCCTGCGCGGC
GCCGGTGGCGGCAGTGACGACGAGGGTGACGACGACATCGGCAGGGGGAA
CGGGGACGGCGGCAGTGGCGGC
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