mRNA_L-elsbetiae_contig7547.16446.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig7547.16446.1
Unique NamemRNA_L-elsbetiae_contig7547.16446.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig7547.16446.1 vs. uniprot
Match: A0A7S2XQ82_9STRA (Hypothetical protein n=1 Tax=Attheya septentrionalis TaxID=420275 RepID=A0A7S2XQ82_9STRA)

HSP 1 Score: 185 bits (469), Expect = 3.030e-58
Identity = 91/92 (98.91%), Postives = 91/92 (98.91%), Query Frame = 1 
Query:    1 TGFKCGINYQPPTVVPGGDLARVQRAVCMVANTTAIAEALSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVGAETA 276
            TGFKCGINYQPPTVVP GDLARVQRAVCMVANTTAIAEALSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVGAETA
Sbjct:   66 TGFKCGINYQPPTVVPDGDLARVQRAVCMVANTTAIAEALSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVGAETA 157
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BLAST of mRNA_L-elsbetiae_contig7547.16446.1 vs. uniprot
Match: A0A7S2X5D0_PROMC (Hypothetical protein n=1 Tax=Prorocentrum micans TaxID=2945 RepID=A0A7S2X5D0_PROMC)

HSP 1 Score: 183 bits (465), Expect = 3.760e-58
Identity = 87/95 (91.58%), Postives = 93/95 (97.89%), Query Frame = 1 
Query:    1 TGFKCGINYQPPTVVPGGDLARVQRAVCMVANTTAIAEALSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVGAETAEGE 285
            TGFKCGINYQPPTVVPGGDLA+VQRAVCM++N+TAIAE  SR+DHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVGAETA+GE
Sbjct:   27 TGFKCGINYQPPTVVPGGDLAKVQRAVCMISNSTAIAEVFSRVDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVGAETADGE 121
[Close]
BLAST of mRNA_L-elsbetiae_contig7547.16446.1 vs. uniprot
Match: A0A6G0R1R0_9STRA (Tubulin_C domain-containing protein (Fragment) n=4 Tax=Phytophthora TaxID=4783 RepID=A0A6G0R1R0_9STRA)

HSP 1 Score: 182 bits (462), Expect = 7.340e-58
Identity = 88/95 (92.63%), Postives = 92/95 (96.84%), Query Frame = 1 
Query:    1 TGFKCGINYQPPTVVPGGDLARVQRAVCMVANTTAIAEALSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVGAETAEGE 285
            TGFKCGINYQPP+VVPGGDLARVQRAVCM++NT+AIAE  SRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEV AETAEGE
Sbjct:   17 TGFKCGINYQPPSVVPGGDLARVQRAVCMISNTSAIAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVSAETAEGE 111
[Close]
BLAST of mRNA_L-elsbetiae_contig7547.16446.1 vs. uniprot
Match: TBA2_PELFA (Tubulin alpha-2 chain n=45 Tax=cellular organisms TaxID=131567 RepID=TBA2_PELFA)

HSP 1 Score: 192 bits (488), Expect = 1.070e-57
Identity = 95/95 (100.00%), Postives = 95/95 (100.00%), Query Frame = 1 
Query:    1 TGFKCGINYQPPTVVPGGDLARVQRAVCMVANTTAIAEALSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVGAETAEGE 285
            TGFKCGINYQPPTVVPGGDLARVQRAVCMVANTTAIAEALSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVGAETAEGE
Sbjct:  349 TGFKCGINYQPPTVVPGGDLARVQRAVCMVANTTAIAEALSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVGAETAEGE 443
[Close]
BLAST of mRNA_L-elsbetiae_contig7547.16446.1 vs. uniprot
Match: Q7Y246_GOSBA (Alpha-tubulin (Fragment) n=1 Tax=Gossypium barbadense TaxID=3634 RepID=Q7Y246_GOSBA)

HSP 1 Score: 181 bits (458), Expect = 2.110e-57
Identity = 85/94 (90.43%), Postives = 92/94 (97.87%), Query Frame = 1 
Query:    1 TGFKCGINYQPPTVVPGGDLARVQRAVCMVANTTAIAEALSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVGAETAEG 282
            TGFKCGINYQPPTVVPGGDLA+VQRAVCM++N+T++AE  SRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVGAE+AEG
Sbjct:    7 TGFKCGINYQPPTVVPGGDLAKVQRAVCMISNSTSVAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVGAESAEG 100
[Close]
BLAST of mRNA_L-elsbetiae_contig7547.16446.1 vs. uniprot
Match: A0A7S0Q113_9EUKA (Tubulin alpha chain n=24 Tax=Eukaryota TaxID=2759 RepID=A0A7S0Q113_9EUKA)

HSP 1 Score: 191 bits (485), Expect = 2.990e-57
Identity = 94/95 (98.95%), Postives = 95/95 (100.00%), Query Frame = 1 
Query:    1 TGFKCGINYQPPTVVPGGDLARVQRAVCMVANTTAIAEALSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVGAETAEGE 285
            TGFKCGINYQPPTVVPGGDLARVQRAVCMV+NTTAIAEALSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVGAETAEGE
Sbjct:  349 TGFKCGINYQPPTVVPGGDLARVQRAVCMVSNTTAIAEALSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVGAETAEGE 443
[Close]
BLAST of mRNA_L-elsbetiae_contig7547.16446.1 vs. uniprot
Match: A0A835J434_9ROSI (Tubulin_C domain-containing protein n=1 Tax=Salix dunnii TaxID=1413687 RepID=A0A835J434_9ROSI)

HSP 1 Score: 181 bits (458), Expect = 4.530e-57
Identity = 85/95 (89.47%), Postives = 93/95 (97.89%), Query Frame = 1 
Query:    1 TGFKCGINYQPPTVVPGGDLARVQRAVCMVANTTAIAEALSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVGAETAEGE 285
            TGFKCGINYQPPTVVPGGDLA+VQRAVCM++N+T++AE  SRIDHKFDLMY+KRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVGAE+AEGE
Sbjct:   30 TGFKCGINYQPPTVVPGGDLAKVQRAVCMISNSTSVAEVFSRIDHKFDLMYSKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVGAESAEGE 124
[Close]
BLAST of mRNA_L-elsbetiae_contig7547.16446.1 vs. uniprot
Match: A0A067C433_SAPPC (Tubulin_C domain-containing protein n=1 Tax=Saprolegnia parasitica (strain CBS 223.65) TaxID=695850 RepID=A0A067C433_SAPPC)

HSP 1 Score: 182 bits (462), Expect = 6.230e-57
Identity = 88/95 (92.63%), Postives = 91/95 (95.79%), Query Frame = 1 
Query:    1 TGFKCGINYQPPTVVPGGDLARVQRAVCMVANTTAIAEALSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVGAETAEGE 285
            TGFKCGINYQPPTVVPGGDLARVQRAVCM++NT+AIAE  SRIDHKFDLMYAKRAF HWYVGEGMEEGEFSEAREDLAALEKDYEEV AETAEGE
Sbjct:   82 TGFKCGINYQPPTVVPGGDLARVQRAVCMISNTSAIAEVFSRIDHKFDLMYAKRAFAHWYVGEGMEEGEFSEAREDLAALEKDYEEVSAETAEGE 176
[Close]
BLAST of mRNA_L-elsbetiae_contig7547.16446.1 vs. uniprot
Match: Q2WBI5_COCNU (Alpha tubulin (Fragment) n=1 Tax=Cocos nucifera TaxID=13894 RepID=Q2WBI5_COCNU)

HSP 1 Score: 179 bits (455), Expect = 7.550e-57
Identity = 86/95 (90.53%), Postives = 92/95 (96.84%), Query Frame = 1 
Query:    1 TGFKCGINYQPPTVVPGGDLARVQRAVCMVANTTAIAEALSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVGAETAEGE 285
            TGFKCGINYQPPTVVPGGDLA+VQRAVCMV+N+T++AE  SRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVGAE+AE E
Sbjct:   11 TGFKCGINYQPPTVVPGGDLAKVQRAVCMVSNSTSVAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVGAESAEDE 105
[Close]
BLAST of mRNA_L-elsbetiae_contig7547.16446.1 vs. uniprot
Match: A0A7J8SZW8_GOSDV (Tubulin_C domain-containing protein n=2 Tax=rosids TaxID=71275 RepID=A0A7J8SZW8_GOSDV)

HSP 1 Score: 180 bits (457), Expect = 1.140e-56
Identity = 84/94 (89.36%), Postives = 92/94 (97.87%), Query Frame = 1 
Query:    1 TGFKCGINYQPPTVVPGGDLARVQRAVCMVANTTAIAEALSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVGAETAEG 282
            TGFKCGINYQPPTVVPGGDLA+VQRAVCM++N+T++AE  SRIDHKFDLMYAKRAF+HWYVGEGMEEGEFSEAREDLAALEKDYEEVGAE+AEG
Sbjct:   49 TGFKCGINYQPPTVVPGGDLAKVQRAVCMISNSTSVAEVFSRIDHKFDLMYAKRAFIHWYVGEGMEEGEFSEAREDLAALEKDYEEVGAESAEG 142
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig7547.16446.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7S2XQ82_9STRA3.030e-5898.91Hypothetical protein n=1 Tax=Attheya septentrional... [more]
A0A7S2X5D0_PROMC3.760e-5891.58Hypothetical protein n=1 Tax=Prorocentrum micans T... [more]
A0A6G0R1R0_9STRA7.340e-5892.63Tubulin_C domain-containing protein (Fragment) n=4... [more]
TBA2_PELFA1.070e-57100.00Tubulin alpha-2 chain n=45 Tax=cellular organisms ... [more]
Q7Y246_GOSBA2.110e-5790.43Alpha-tubulin (Fragment) n=1 Tax=Gossypium barbade... [more]
A0A7S0Q113_9EUKA2.990e-5798.95Tubulin alpha chain n=24 Tax=Eukaryota TaxID=2759 ... [more]
A0A835J434_9ROSI4.530e-5789.47Tubulin_C domain-containing protein n=1 Tax=Salix ... [more]
A0A067C433_SAPPC6.230e-5792.63Tubulin_C domain-containing protein n=1 Tax=Saprol... [more]
Q2WBI5_COCNU7.550e-5790.53Alpha tubulin (Fragment) n=1 Tax=Cocos nucifera Ta... [more]
A0A7J8SZW8_GOSDV1.140e-5689.36Tubulin_C domain-containing protein n=2 Tax=rosids... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig7547contigL-elsbetiae_contig7547:3..453 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score194.9
Seed ortholog evalue1.7e-47
Seed eggNOG ortholog2880.D7G923
KEGG koko:K07374
KEGG Pathwayko04145,ko04210,ko04530,ko04540,ko05130,map04145,map04210,map04530,map04540,map05130
Hectar predicted targeting categoryother localisation
EggNOG free text desc.structural constituent of cytoskeleton
EggNOG OGsCOG5023@1,KOG1376@2759
COG Functional cat.Z
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko03019,ko03036,ko04147,ko04812
Exons2
Model size285
Cds size285
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816838.8675606-CDS-L-elsbetiae_contig7547:2..1161622816838.8675606-CDS-L-elsbetiae_contig7547:2..116Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7547 3..116 +
1691683852.3408463-CDS-L-elsbetiae_contig7547:2..1161691683852.3408463-CDS-L-elsbetiae_contig7547:2..116Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7547 3..116 +
1622816838.8795264-CDS-L-elsbetiae_contig7547:282..4531622816838.8795264-CDS-L-elsbetiae_contig7547:282..453Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7547 283..453 +
1691683852.357135-CDS-L-elsbetiae_contig7547:282..4531691683852.357135-CDS-L-elsbetiae_contig7547:282..453Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7547 283..453 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig7547.16446.1prot_L-elsbetiae_contig7547.16446.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig7547 3..453 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig7547.16446.1

>prot_L-elsbetiae_contig7547.16446.1 ID=prot_L-elsbetiae_contig7547.16446.1|Name=mRNA_L-elsbetiae_contig7547.16446.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=95bp
TGFKCGINYQPPTVVPGGDLARVQRAVCMVANTTAIAEALSRIDHKFDLM
YAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVGAETAEGE
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mRNA from alignment at L-elsbetiae_contig7547:3..453+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig7547.16446.1 ID=mRNA_L-elsbetiae_contig7547.16446.1|Name=mRNA_L-elsbetiae_contig7547.16446.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=451bp|location=Sequence derived from alignment at L-elsbetiae_contig7547:3..453+ (Laminarionema elsbetiae ELsaHSoW15)
ACCGGCTTCAAGTGCGGCATCAACTACCAGCCGCCCACCGTCGTGCCCGG
CGGCGACCTCGCCCGCGTGCAGCGCGCCGTCTGCATGGTGGCCAACACCA
CCGCCATCGCCGAGGTATGTGTGTATATGTACATGGGTCAAATTGTTTTT
GTAAGTCACCCTGTCTTTCTTCTGTTCATTTTATTGAGCGCGACGAAGTA
CCGCGTTTTCATGATCACCTCATTTTGACTTCCTTTCGCCCCTTTGCCTT
TAAACCCCCCCGTCCCATAAAACAACGCAGGCCCTGTCTCGCATCGACCA
CAAGTTTGACCTCATGTACGCCAAGCGTGCCTTCGTGCACTGGTACGTGG
GTGAGGGCATGGAGGAAGGCGAGTTCTCTGAGGCTCGCGAGGACCTCGCG
GCCCTCGAGAAGGACTACGAAGAGGTCGGCGCCGAGACCGCCGAGGGCGA
G
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Coding sequence (CDS) from alignment at L-elsbetiae_contig7547:3..453+

>mRNA_L-elsbetiae_contig7547.16446.1 ID=mRNA_L-elsbetiae_contig7547.16446.1|Name=mRNA_L-elsbetiae_contig7547.16446.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=570bp|location=Sequence derived from alignment at L-elsbetiae_contig7547:3..453+ (Laminarionema elsbetiae ELsaHSoW15)
ACCGGCTTCAAGTGCGGCATCAACTACCAGCCGCCCACCGTCGTGCCCGG
CGGCGACCTCGCCCGCGTGCAGCGCGCCGTCTGCATGGTGGCCAACACCA
CCGCCATCGCCGAGACCGGCTTCAAGTGCGGCATCAACTACCAGCCGCCC
ACCGTCGTGCCCGGCGGCGACCTCGCCCGCGTGCAGCGCGCCGTCTGCAT
GGTGGCCAACACCACCGCCATCGCCGAGGCCCTGTCTCGCATCGACCACA
AGTTTGACCTCATGTACGCCAAGCGTGCCTTCGTGCACTGGTACGTGGGT
GAGGGCATGGAGGAAGGCGAGTTCTCTGAGGCTCGCGAGGACCTCGCGGC
CCTCGAGAAGGACTACGAAGAGGTCGGCGCCGAGACCGCCGAGGGCGAGG
CCCTGTCTCGCATCGACCACAAGTTTGACCTCATGTACGCCAAGCGTGCC
TTCGTGCACTGGTACGTGGGTGAGGGCATGGAGGAAGGCGAGTTCTCTGA
GGCTCGCGAGGACCTCGCGGCCCTCGAGAAGGACTACGAAGAGGTCGGCG
CCGAGACCGCCGAGGGCGAG
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