mRNA_L-elsbetiae_contig7483.16374.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig7483.16374.1
Unique NamemRNA_L-elsbetiae_contig7483.16374.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
BLAST of mRNA_L-elsbetiae_contig7483.16374.1 vs. uniprot
Match: D7G0K9_ECTSI (Phosphate transporter n=2 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G0K9_ECTSI)

HSP 1 Score: 215 bits (547), Expect = 2.440e-65
Identity = 103/128 (80.47%), Postives = 114/128 (89.06%), Query Frame = 1
Query:    1 LSQIECFEDNPGILMYGNMCVVYTTGIWLLLASFLELPVSTTHSTIGGIVGMAMTYRGPDCVVWYEEAEKFPFVDGIAGIVASWVLSPVLSGFIAVALFLFVRTFVLRSPHSAKRSIAMFPFLVFVTI 384
            ++  ECFEDNPGILMYGNMCVVYTTG WLLLASF ELPVSTTHSTIGGIVGMA+TYRGPDCVVWYE+A+ FP++ GI+ IVASWVLSPVLS  IAVALFLF+RTFVLRSP S KR+I +FPFLV  TI
Sbjct:   87 IADTECFEDNPGILMYGNMCVVYTTGFWLLLASFFELPVSTTHSTIGGIVGMAITYRGPDCVVWYEKADLFPYLKGISAIVASWVLSPVLSAVIAVALFLFMRTFVLRSPDSHKRAIVVFPFLVTATI 214          
BLAST of mRNA_L-elsbetiae_contig7483.16374.1 vs. uniprot
Match: A0A6H5JNL8_9PHAE (Phosphate transporter n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JNL8_9PHAE)

HSP 1 Score: 213 bits (542), Expect = 3.360e-65
Identity = 103/127 (81.10%), Postives = 114/127 (89.76%), Query Frame = 1
Query:    4 SQIECFEDNPGILMYGNMCVVYTTGIWLLLASFLELPVSTTHSTIGGIVGMAMTYRGPDCVVWYEEAEKFPFVDGIAGIVASWVLSPVLSGFIAVALFLFVRTFVLRSPHSAKRSIAMFPFLVFVTI 384
            ++IECF DNPGILMYGNMCVVYTTGIWLLLAS+ ELPVSTTHSTIGGIVGMAMTYRG DCVVWYEEA+ FP++ GI+ IVASWVLSPVLS  IAVALFLF+RTFVLRSP S +R+I +FPFLV  TI
Sbjct:    3 AKIECFTDNPGILMYGNMCVVYTTGIWLLLASYFELPVSTTHSTIGGIVGMAMTYRGADCVVWYEEADLFPYLKGISAIVASWVLSPVLSAVIAVALFLFMRTFVLRSPDSHQRAIVVFPFLVTATI 129          
BLAST of mRNA_L-elsbetiae_contig7483.16374.1 vs. uniprot
Match: A0A6H5JNE7_9PHAE (Phosphate transporter n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JNE7_9PHAE)

HSP 1 Score: 211 bits (538), Expect = 5.210e-64
Identity = 100/128 (78.12%), Postives = 113/128 (88.28%), Query Frame = 1
Query:    1 LSQIECFEDNPGILMYGNMCVVYTTGIWLLLASFLELPVSTTHSTIGGIVGMAMTYRGPDCVVWYEEAEKFPFVDGIAGIVASWVLSPVLSGFIAVALFLFVRTFVLRSPHSAKRSIAMFPFLVFVTI 384
            ++ IECFEDNPGILMYGNMCVVYTTGIWLLLASF ELPVSTTHST+GGIVGMAMTYRG DCVVWYEEA+ FP++ G++ IVASW LSP+ S  IAVALFLF+RTFVLRSP + KR+I +FPFLV  TI
Sbjct:   86 IADIECFEDNPGILMYGNMCVVYTTGIWLLLASFFELPVSTTHSTVGGIVGMAMTYRGADCVVWYEEADLFPYLKGVSAIVASWALSPLFSAVIAVALFLFMRTFVLRSPDAHKRAINVFPFLVTATI 213          
BLAST of mRNA_L-elsbetiae_contig7483.16374.1 vs. uniprot
Match: D7FWT9_ECTSI (Phosphate transporter n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FWT9_ECTSI)

HSP 1 Score: 198 bits (503), Expect = 1.060e-58
Identity = 94/126 (74.60%), Postives = 108/126 (85.71%), Query Frame = 1
Query:    7 QIECFEDNPGILMYGNMCVVYTTGIWLLLASFLELPVSTTHSTIGGIVGMAMTYRGPDCVVWYEEAEKFPFVDGIAGIVASWVLSPVLSGFIAVALFLFVRTFVLRSPHSAKRSIAMFPFLVFVTI 384
            Q+ CF DNPGILMYGNMCVVYT+G WLLLASF ELPVSTTH+T+GGIVGMAMTYRG DCVVWYEEAE FP++ G++ IVASW LSPVLS  IAVAL+ F+RTFVLR+  S K++I +FP LV VTI
Sbjct:   96 QVGCFVDNPGILMYGNMCVVYTSGFWLLLASFFELPVSTTHATVGGIVGMAMTYRGADCVVWYEEAEFFPYLKGVSAIVASWALSPVLSAVIAVALYFFMRTFVLRADQSQKKAINIFPCLVTVTI 221          
BLAST of mRNA_L-elsbetiae_contig7483.16374.1 vs. uniprot
Match: D7FZJ7_ECTSI (Phosphate transporter n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZJ7_ECTSI)

HSP 1 Score: 194 bits (492), Expect = 3.590e-57
Identity = 92/127 (72.44%), Postives = 101/127 (79.53%), Query Frame = 1
Query:    4 SQIECFEDNPGILMYGNMCVVYTTGIWLLLASFLELPVSTTHSTIGGIVGMAMTYRGPDCVVWYEEAEKFPFVDGIAGIVASWVLSPVLSGFIAVALFLFVRTFVLRSPHSAKRSIAMFPFLVFVTI 384
            + IECF DNPGILMYGNMCVVYT GIWLLLASF ELPVSTTHSTIGGIVGM MTYRG DCVVWYEEA+ FP++ G+  IV SW L PVLSG +A  LF  VR  VLRS H+  RS+ +FP LV VTI
Sbjct:   88 ADIECFTDNPGILMYGNMCVVYTNGIWLLLASFFELPVSTTHSTIGGIVGMTMTYRGADCVVWYEEADHFPYIKGVFAIVVSWALFPVLSGVVATLLFFVVRALVLRSEHALNRSMIVFPLLVTVTI 214          
BLAST of mRNA_L-elsbetiae_contig7483.16374.1 vs. uniprot
Match: D8LJQ4_ECTSI (High affinity phosphate transporter n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LJQ4_ECTSI)

HSP 1 Score: 172 bits (437), Expect = 6.440e-53
Identity = 77/126 (61.11%), Postives = 100/126 (79.37%), Query Frame = 1
Query:    7 QIECFEDNPGILMYGNMCVVYTTGIWLLLASFLELPVSTTHSTIGGIVGMAMTYRGPDCVVWYEEAEKFPFVDGIAGIVASWVLSPVLSGFIAVALFLFVRTFVLRSPHSAKRSIAMFPFLVFVTI 384
            ++ECF DNPG+LMYG MCVVYTTG+WLLLAS+L LPVSTTH+TIG ++GM + Y G  CVVW++E++ FP+V G+A I  SWVLSP+ SG +++ +FL VR FVLRSP++  RS  +FP LV V I
Sbjct:   28 KVECFLDNPGVLMYGMMCVVYTTGMWLLLASYLALPVSTTHATIGAMIGMTVVYGGAGCVVWFQESDSFPYVKGVAAIAVSWVLSPIFSGIVSLLVFLTVRAFVLRSPNAFGRSFWVFPILVMVAI 153          
BLAST of mRNA_L-elsbetiae_contig7483.16374.1 vs. uniprot
Match: D8LJQ6_ECTSI (Phosphate transporter n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LJQ6_ECTSI)

HSP 1 Score: 177 bits (449), Expect = 3.820e-51
Identity = 83/125 (66.40%), Postives = 100/125 (80.00%), Query Frame = 1
Query:   10 IECFEDNPGILMYGNMCVVYTTGIWLLLASFLELPVSTTHSTIGGIVGMAMTYRGPDCVVWYEEAEKFPFVDGIAGIVASWVLSPVLSGFIAVALFLFVRTFVLRSPHSAKRSIAMFPFLVFVTI 384
            +ECF DNPGILMYG MCVVYTTG+WLLLAS+LELPVSTTHSTIG I+GMA+ Y G  CVVWY+E++ FP+  G+A I  SWVLSP+ SG  ++ +FL VR FVLRSP++  RS  +FP LV VTI
Sbjct:   50 VECFLDNPGILMYGMMCVVYTTGMWLLLASYLELPVSTTHSTIGAIIGMAVAYAGSGCVVWYQESDIFPYFKGVAAIAVSWVLSPIFSGVASLLVFLTVRAFVLRSPNAFGRSFWVFPVLVMVTI 174          
BLAST of mRNA_L-elsbetiae_contig7483.16374.1 vs. uniprot
Match: D8LJP9_ECTSI (High affinity phosphate transporter n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LJP9_ECTSI)

HSP 1 Score: 157 bits (396), Expect = 5.390e-47
Identity = 71/126 (56.35%), Postives = 93/126 (73.81%), Query Frame = 1
Query:    7 QIECFEDNPGILMYGNMCVVYTTGIWLLLASFLELPVSTTHSTIGGIVGMAMTYRGPDCVVWYEEAEKFPFVDGIAGIVASWVLSPVLSGFIAVALFLFVRTFVLRSPHSAKRSIAMFPFLVFVTI 384
            Q+ CF DNPG+LMYG MCV+YTT +WLLLAS+LELPVS T STI  IVGM + Y G  CVVW+ E+E FP   G+  I+  W+LSP+++G  +  +FL +RTFVLRSPH+ +RS  +FP LV + +
Sbjct:    6 QVSCFLDNPGVLMYGMMCVLYTTAMWLLLASYLELPVSATQSTISSIVGMTLAYGGRACVVWHRESEHFPGFQGVGAILLYWLLSPIVAGVASCLVFLALRTFVLRSPHAFRRSFWVFPVLVMIIV 131          
BLAST of mRNA_L-elsbetiae_contig7483.16374.1 vs. uniprot
Match: A0A6V1T0D7_HETAK (Phosphate transporter n=2 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V1T0D7_HETAK)

HSP 1 Score: 154 bits (390), Expect = 3.540e-42
Identity = 65/124 (52.42%), Postives = 96/124 (77.42%), Query Frame = 1
Query:    1 LSQIECFEDNPGILMYGNMCVVYTTGIWLLLASFLELPVSTTHSTIGGIVGMAMTYRGPDCVVWYEEAEKFPFVDGIAGIVASWVLSPVLSGFIAVALFLFVRTFVLRSPHSAKRSIAMFPFLV 372
            ++ I+CF D+  +LMYG MCV++ TG+WLL+A+F ++PVSTTHS +GGI+GM +  +G  CVVW+++ ++FPFV G++ IV SW+LSP+ SG  A  L+LFVRTF+LRS +S  R+   +PFL+
Sbjct:   85 IADIDCFIDDGPVLMYGMMCVIFCTGLWLLIATFFQMPVSTTHSVVGGIIGMTIAAKGGSCVVWHKDTDQFPFVKGVSAIVVSWILSPLFSGVGAAILYLFVRTFILRSENSYTRAFIFYPFLL 208          
BLAST of mRNA_L-elsbetiae_contig7483.16374.1 vs. uniprot
Match: A0A7S0QA31_9EUKA (Phosphate transporter n=3 Tax=Coccolithus braarudii TaxID=221442 RepID=A0A7S0QA31_9EUKA)

HSP 1 Score: 154 bits (389), Expect = 4.600e-42
Identity = 70/128 (54.69%), Postives = 95/128 (74.22%), Query Frame = 1
Query:    1 LSQIECFEDNPGILMYGNMCVVYTTGIWLLLASFLELPVSTTHSTIGGIVGMAMTYRGPDCVVWYEEAEKFPFVDGIAGIVASWVLSPVLSGFIAVALFLFVRTFVLRSPHSAKRSIAMFPFLVFVTI 384
            ++ I+CF D P +LMYG +CV+++ G WLLLAS+LE+PVSTTHS +GG++GMAM   GP CV+W E  ++FP+V G++ IV SW LSP+LS   A+ LFL VRT VLR+  S  R+  ++P LV VTI
Sbjct:   76 IADIDCFVDEPAVLMYGCLCVIFSVGGWLLLASYLEMPVSTTHSCVGGMIGMAMVAHGPACVIWAEPTDQFPYVKGVSAIVISWFLSPLLSAISAMGLFLLVRTTVLRAKDSYDRAFKVYPLLVGVTI 203          
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig7483.16374.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G0K9_ECTSI2.440e-6580.47Phosphate transporter n=2 Tax=Ectocarpus siliculos... [more]
A0A6H5JNL8_9PHAE3.360e-6581.10Phosphate transporter n=1 Tax=Ectocarpus sp. CCAP ... [more]
A0A6H5JNE7_9PHAE5.210e-6478.13Phosphate transporter n=1 Tax=Ectocarpus sp. CCAP ... [more]
D7FWT9_ECTSI1.060e-5874.60Phosphate transporter n=1 Tax=Ectocarpus siliculos... [more]
D7FZJ7_ECTSI3.590e-5772.44Phosphate transporter n=1 Tax=Ectocarpus siliculos... [more]
D8LJQ4_ECTSI6.440e-5361.11High affinity phosphate transporter n=1 Tax=Ectoca... [more]
D8LJQ6_ECTSI3.820e-5166.40Phosphate transporter n=1 Tax=Ectocarpus siliculos... [more]
D8LJP9_ECTSI5.390e-4756.35High affinity phosphate transporter n=1 Tax=Ectoca... [more]
A0A6V1T0D7_HETAK3.540e-4252.42Phosphate transporter n=2 Tax=Heterosigma akashiwo... [more]
A0A7S0QA31_9EUKA4.600e-4254.69Phosphate transporter n=3 Tax=Coccolithus braarudi... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig7483contigL-elsbetiae_contig7483:7766..8610 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score218.8
Seed ortholog evalue1.5e-54
Seed eggNOG ortholog2880.D7G0K8
Preferred namePHO89
KEGG koko:K01280,ko:K03306,ko:K14640
KEGG TC2.A.20,2.A.20.2
Hectar predicted targeting categoryother localisation
GOsGO:0003674,GO:0005215,GO:0005315,GO:0005436,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005783,GO:0005886,GO:0005887,GO:0006810,GO:0006811,GO:0006812,GO:0006814,GO:0006817,GO:0006820,GO:0008150,GO:0008324,GO:0012505,GO:0015075,GO:0015077,GO:0015081,GO:0015291,GO:0015293,GO:0015294,GO:0015318,GO:0015319,GO:0015370,GO:0015672,GO:0015698,GO:0016020,GO:0016021,GO:0022804,GO:0022857,GO:0022890,GO:0030001,GO:0031224,GO:0031226,GO:0034220,GO:0035435,GO:0035725,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044424,GO:0044425,GO:0044444,GO:0044459,GO:0044464,GO:0046873,GO:0051179,GO:0051234,GO:0055085,GO:0071944,GO:0098655,GO:0098656,GO:0098660,GO:0098661,GO:0098662
EggNOG free text desc.inorganic phosphate transmembrane transporter activity
EggNOG OGsCOG0306@1,KOG2493@2759
EC3.4.14.10
COG Functional cat.U
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko01002,ko02000,ko03110
Exons2
Model size384
Cds size384
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816832.0845582-CDS-L-elsbetiae_contig7483:7765..79901622816832.0845582-CDS-L-elsbetiae_contig7483:7765..7990Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7483 7766..7990 +
1691683847.0095017-CDS-L-elsbetiae_contig7483:7765..79901691683847.0095017-CDS-L-elsbetiae_contig7483:7765..7990Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7483 7766..7990 +
1622816832.095784-CDS-L-elsbetiae_contig7483:8451..86101622816832.095784-CDS-L-elsbetiae_contig7483:8451..8610Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7483 8452..8610 +
1691683847.0211587-CDS-L-elsbetiae_contig7483:8451..86101691683847.0211587-CDS-L-elsbetiae_contig7483:8451..8610Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7483 8452..8610 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig7483.16374.1prot_L-elsbetiae_contig7483.16374.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig7483 7766..8610 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig7483.16374.1

>prot_L-elsbetiae_contig7483.16374.1 ID=prot_L-elsbetiae_contig7483.16374.1|Name=mRNA_L-elsbetiae_contig7483.16374.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=128bp
LSQIECFEDNPGILMYGNMCVVYTTGIWLLLASFLELPVSTTHSTIGGIV
GMAMTYRGPDCVVWYEEAEKFPFVDGIAGIVASWVLSPVLSGFIAVALFL
FVRTFVLRSPHSAKRSIAMFPFLVFVTI
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mRNA from alignment at L-elsbetiae_contig7483:7766..8610+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig7483.16374.1 ID=mRNA_L-elsbetiae_contig7483.16374.1|Name=mRNA_L-elsbetiae_contig7483.16374.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=845bp|location=Sequence derived from alignment at L-elsbetiae_contig7483:7766..8610+ (Laminarionema elsbetiae ELsaHSoW15)
TTGTCGCAGATCGAGTGCTTCGAGGACAACCCGGGCATCCTGATGTACGG CAACATGTGCGTCGTATACACCACCGGAATCTGGCTCCTGCTGGCGTCCT TCCTCGAGCTGCCCGTGTCCACCACACACTCCACCATCGGAGGCATCGTC GGAATGGCCATGACCTACCGCGGCCCCGATTGCGTCGTGTGGTACGAGGA GGCCGAAAAGTTCCCCTTTGTGGACGTGAGTAAACATGTGCCTGTGGCGA CGATGTTGCATATTTTCAGTCACACTATCAGATTCGTCAGTCAACAGAAA ACGTACTCCTACATCGGTGTATACATATTGTGTGCACCGAGTTGTGAAGG GTGGTTAGGTTATATCCAAACCGAACCATCTAGATGGCCGACGATATCCC ACACGCGCGAGAAAACCTTCGGAGGGCTTTTACTTCGGTTCTCGTAAAGT CGTCGCTGTTGAATACCGTACAACATGTAGCGAAAAGTGTCTCCAGCAAA AAGTGCCTTCATTGTTTCTCAGACCGTGGCTCGCAATCCTTAAATCAGTC CATACTTTGTCCGATTTATTTCACGAACCCCCTCTTGCTTATTACGTGGT ACCTCCCCTGCCTCGTTGCTCCCCAACAAACACACTTTCCTACCAACCAC CGAACGGCACCGATCGACCGATTGGGCGAATCACAGGGCATTGCCGGCAT CGTGGCCTCTTGGGTGCTCTCCCCCGTCCTGTCGGGATTCATCGCCGTCG CCCTGTTCCTGTTCGTGAGGACCTTTGTGCTGAGGTCGCCCCACTCCGCC AAGAGATCCATCGCCATGTTCCCCTTCTTGGTGTTCGTCACCATC
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Coding sequence (CDS) from alignment at L-elsbetiae_contig7483:7766..8610+

>mRNA_L-elsbetiae_contig7483.16374.1 ID=mRNA_L-elsbetiae_contig7483.16374.1|Name=mRNA_L-elsbetiae_contig7483.16374.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=768bp|location=Sequence derived from alignment at L-elsbetiae_contig7483:7766..8610+ (Laminarionema elsbetiae ELsaHSoW15)
TTGTCGCAGATCGAGTGCTTCGAGGACAACCCGGGCATCCTGATGTACGG
CAACATGTGCGTCGTATACACCACCGGAATCTGGCTCCTGCTGGCGTCCT
TCCTCGAGCTGCCCGTGTCCACCACACACTCCACCATCGGAGGCATCGTC
GGAATGGCCATGACCTACCGCGGCCCCGATTGCGTCGTGTGGTACGAGGA
GGCCGAAAAGTTCCCCTTTGTGGACTTGTCGCAGATCGAGTGCTTCGAGG
ACAACCCGGGCATCCTGATGTACGGCAACATGTGCGTCGTATACACCACC
GGAATCTGGCTCCTGCTGGCGTCCTTCCTCGAGCTGCCCGTGTCCACCAC
ACACTCCACCATCGGAGGCATCGTCGGAATGGCCATGACCTACCGCGGCC
CCGATTGCGTCGTGTGGTACGAGGAGGCCGAAAAGTTCCCCTTTGTGGAC
GGCATTGCCGGCATCGTGGCCTCTTGGGTGCTCTCCCCCGTCCTGTCGGG
ATTCATCGCCGTCGCCCTGTTCCTGTTCGTGAGGACCTTTGTGCTGAGGT
CGCCCCACTCCGCCAAGAGATCCATCGCCATGTTCCCCTTCTTGGTGTTC
GTCACCATCGGCATTGCCGGCATCGTGGCCTCTTGGGTGCTCTCCCCCGT
CCTGTCGGGATTCATCGCCGTCGCCCTGTTCCTGTTCGTGAGGACCTTTG
TGCTGAGGTCGCCCCACTCCGCCAAGAGATCCATCGCCATGTTCCCCTTC
TTGGTGTTCGTCACCATC
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