mRNA_L-elsbetiae_contig748.16369.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig748.16369.1
Unique NamemRNA_L-elsbetiae_contig748.16369.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig748.16369.1 vs. uniprot
Match: PRXV_ASCNO (Vanadium-dependent bromoperoxidase n=1 Tax=Ascophyllum nodosum TaxID=52969 RepID=PRXV_ASCNO)

HSP 1 Score: 101 bits (251), Expect = 3.660e-22
Identity = 45/76 (59.21%), Postives = 55/76 (72.37%), Query Frame = 2 
Query:    2 RQMMGVHYRLDSHEGLVLGEIIAVRRLHQELVGFPENHFYEFRLFTGETIKLDHDGKFYIDGKRCSGAAFSGVNSC 229
            RQM+G+HYR D  +GL+LGE I VR LHQEL+ F E   +EFRLFTGE IKL  DG F IDG +C G  ++GV +C
Sbjct:  480 RQMLGIHYRFDGIQGLLLGETITVRTLHQELMTFAEESTFEFRLFTGEVIKLFQDGTFTIDGFKCPGLVYTGVENC 555
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BLAST of mRNA_L-elsbetiae_contig748.16369.1 vs. uniprot
Match: O82433_FUCDI (Vanadium bromoperoxidase n=1 Tax=Fucus distichus TaxID=3012 RepID=O82433_FUCDI)

HSP 1 Score: 101 bits (251), Expect = 4.140e-22
Identity = 46/76 (60.53%), Postives = 54/76 (71.05%), Query Frame = 2 
Query:    2 RQMMGVHYRLDSHEGLVLGEIIAVRRLHQELVGFPENHFYEFRLFTGETIKLDHDGKFYIDGKRCSGAAFSGVNSC 229
            RQM+G+HYR D  +GL+LGE I VR LHQEL+ F E   +EFRLFTGE IKL  DG F IDG  CSG  ++GV  C
Sbjct:  599 RQMLGIHYRFDGIQGLLLGETITVRTLHQELMTFAEEATFEFRLFTGEVIKLFQDGTFSIDGDMCSGLVYTGVADC 674
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BLAST of mRNA_L-elsbetiae_contig748.16369.1 vs. uniprot
Match: B7ZGM6_9PHAE (Putative vanadium-dependent iodoperoxidase 3 n=1 Tax=Laminaria digitata TaxID=80365 RepID=B7ZGM6_9PHAE)

HSP 1 Score: 97.1 bits (240), Expect = 1.220e-20
Identity = 44/76 (57.89%), Postives = 56/76 (73.68%), Query Frame = 2 
Query:    2 RQMMGVHYRLDSHEGLVLGEIIAVRRLHQELVGFPENHFYEFRLFTGETIKLDHDGKFYIDGKRCSGAAFSGVNSC 229
            R M GVH+R+DS +GL+LGE+ AVR L QE V FPEN  YEF L +GETI+L+ DG F+I+ + CSG AF G + C
Sbjct:  538 RNMCGVHWRIDSEQGLLLGEMAAVRILQQEAVTFPENAGYEFNLMSGETIRLETDGTFFINDRLCSGDAFMGADLC 613
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BLAST of mRNA_L-elsbetiae_contig748.16369.1 vs. uniprot
Match: Q4LDE6_9PHAE (Vanadium-dependent iodoperoxidase 1 n=1 Tax=Laminaria digitata TaxID=80365 RepID=Q4LDE6_9PHAE)

HSP 1 Score: 96.3 bits (238), Expect = 2.280e-20
Identity = 44/76 (57.89%), Postives = 55/76 (72.37%), Query Frame = 2 
Query:    2 RQMMGVHYRLDSHEGLVLGEIIAVRRLHQELVGFPENHFYEFRLFTGETIKLDHDGKFYIDGKRCSGAAFSGVNSC 229
            R M+GVH+R+DS  GL+LGE  AVR L QE V +PEN  YEFRL +G+TI+L+ DG F+ID   CSG AF G + C
Sbjct:  549 RNMLGVHWRIDSELGLLLGETAAVRILQQEAVAYPENAGYEFRLMSGKTIRLETDGTFFIDDTLCSGDAFMGADLC 624
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BLAST of mRNA_L-elsbetiae_contig748.16369.1 vs. uniprot
Match: A0A3G3BM28_SACJA (Vanadium-dependent iodine peroxidase n=1 Tax=Saccharina japonica TaxID=88149 RepID=A0A3G3BM28_SACJA)

HSP 1 Score: 66.2 bits (160), Expect = 7.050e-10
Identity = 30/48 (62.50%), Postives = 37/48 (77.08%), Query Frame = 2 
Query:    2 RQMMGVHYRLDSHEGLVLGEIIAVRRLHQELVGFPENHFYEFRLFTGE 145
            R  MGVH+R+D+ EGL+LGE +AVR L QEL GFPE   YEFR+ +GE
Sbjct:  526 RNWMGVHWRMDAQEGLLLGETVAVRILMQELAGFPELEPYEFRVMSGE 573
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig748.16369.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
PRXV_ASCNO3.660e-2259.21Vanadium-dependent bromoperoxidase n=1 Tax=Ascophy... [more]
O82433_FUCDI4.140e-2260.53Vanadium bromoperoxidase n=1 Tax=Fucus distichus T... [more]
B7ZGM6_9PHAE1.220e-2057.89Putative vanadium-dependent iodoperoxidase 3 n=1 T... [more]
Q4LDE6_9PHAE2.280e-2057.89Vanadium-dependent iodoperoxidase 1 n=1 Tax=Lamina... [more]
A0A3G3BM28_SACJA7.050e-1062.50Vanadium-dependent iodine peroxidase n=1 Tax=Sacch... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig748contigL-elsbetiae_contig748:30220..31086 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size439
Cds size225
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig748.16369.1prot_L-elsbetiae_contig748.16369.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig748 30227..30879 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816831.7638164-UTR-L-elsbetiae_contig748:30219..302261622816831.7638164-UTR-L-elsbetiae_contig748:30219..30226Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig748 30220..30226 +
1691683846.8412611-UTR-L-elsbetiae_contig748:30219..302261691683846.8412611-UTR-L-elsbetiae_contig748:30219..30226Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig748 30220..30226 +
1622816831.796379-UTR-L-elsbetiae_contig748:30879..310861622816831.796379-UTR-L-elsbetiae_contig748:30879..31086Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig748 30880..31086 +
1691683846.8756738-UTR-L-elsbetiae_contig748:30879..310861691683846.8756738-UTR-L-elsbetiae_contig748:30879..31086Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig748 30880..31086 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816831.7740002-CDS-L-elsbetiae_contig748:30226..303071622816831.7740002-CDS-L-elsbetiae_contig748:30226..30307Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig748 30227..30307 +
1691683846.8520837-CDS-L-elsbetiae_contig748:30226..303071691683846.8520837-CDS-L-elsbetiae_contig748:30226..30307Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig748 30227..30307 +
1622816831.7839081-CDS-L-elsbetiae_contig748:30735..308791622816831.7839081-CDS-L-elsbetiae_contig748:30735..30879Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig748 30736..30879 +
1691683846.862276-CDS-L-elsbetiae_contig748:30735..308791691683846.862276-CDS-L-elsbetiae_contig748:30735..30879Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig748 30736..30879 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig748.16369.1

>prot_L-elsbetiae_contig748.16369.1 ID=prot_L-elsbetiae_contig748.16369.1|Name=mRNA_L-elsbetiae_contig748.16369.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=75bp
MMGVHYRLDSHEGLVLGEIIAVRRLHQELVGFPENHFYEFRLFTGETIKL
DHDGKFYIDGKRCSGAAFSGVNSC*
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mRNA from alignment at L-elsbetiae_contig748:30220..31086+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig748.16369.1 ID=mRNA_L-elsbetiae_contig748.16369.1|Name=mRNA_L-elsbetiae_contig748.16369.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=867bp|location=Sequence derived from alignment at L-elsbetiae_contig748:30220..31086+ (Laminarionema elsbetiae ELsaHSoW15)
CAGGCAAATGATGGGAGTGCACTACCGCTTGGACAGCCACGAGGGTCTTG
TCCTTGGCGAGATCATCGCCGTGCGCAGGCTCCACCAGGTGAACACAAAC
ACGCGATGCGATGACAAAGAGCGTAAACACCCTCGTGTTGACGCATTGGA
GATGATATGTACTACCCCGTCAGAAAAACGCAGAAGAACGAGGAAGTGTG
TGCAAACACTCCCCGCGGTGCATGTCCTCGTCTCTCATTTTCCGGGCGGC
AATAGAGCGGTACATGGCGCCAAATCCGCCCTCTCTGCTTCCGTATAAAT
TACCGCCAGTTTAGCTTTAATTCGTGGCTTGCCACATCGCCTGCTGCGTC
CTTGTTCGGGGACCGATAGTTGTTGGGACGTCCAGTTTCCTGTCGCGAAT
GTAAGTTCTCTGTTATTTGTCCACCACTCTCCCCAGAGCACGACCGCATT
ATCGTTGTTCCTACACATAGAGTATTATCAACTCAATAAAATAACTTTCT
CTTCCATCTCTTGCAGGAGCTCGTGGGTTTCCCGGAGAACCACTTCTACG
AGTTCCGCCTCTTCACGGGGGAAACCATCAAGCTGGACCACGACGGCAAA
TTTTACATCGACGGGAAACGCTGCTCCGGGGCCGCGTTCAGTGGGGTGAA
CAGCTGCTAAGAAGGCGACAGCTGGATTAGTTGAACGGACTAAACGACGA
ATTAACCTTGCATGACCGCAATGAGGAGATCAGCGTTATCGGCCATGCTG
TGTACAAAGGTATTGAGTGTCGACGGCGCGCGCTCGATGGTTCTGCCGGA
GCTAAATAAACCGCGATCGTGTAGGGGAAGGGTAGCCCGCGTGTTCGTGT
GTGTGAGGAAGACCTGC
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Coding sequence (CDS) from alignment at L-elsbetiae_contig748:30220..31086+

>mRNA_L-elsbetiae_contig748.16369.1 ID=mRNA_L-elsbetiae_contig748.16369.1|Name=mRNA_L-elsbetiae_contig748.16369.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=450bp|location=Sequence derived from alignment at L-elsbetiae_contig748:30220..31086+ (Laminarionema elsbetiae ELsaHSoW15)
ATGATGGGAGTGCACTACCGCTTGGACAGCCACGAGGGTCTTGTCCTTGG
CGAGATCATCGCCGTGCGCAGGCTCCACCAGATGATGGGAGTGCACTACC
GCTTGGACAGCCACGAGGGTCTTGTCCTTGGCGAGATCATCGCCGTGCGC
AGGCTCCACCAGGAGCTCGTGGGTTTCCCGGAGAACCACTTCTACGAGTT
CCGCCTCTTCACGGGGGAAACCATCAAGCTGGACCACGACGGCAAATTTT
ACATCGACGGGAAACGCTGCTCCGGGGCCGCGTTCAGTGGGGTGAACAGC
TGCTAAGAGCTCGTGGGTTTCCCGGAGAACCACTTCTACGAGTTCCGCCT
CTTCACGGGGGAAACCATCAAGCTGGACCACGACGGCAAATTTTACATCG
ACGGGAAACGCTGCTCCGGGGCCGCGTTCAGTGGGGTGAACAGCTGCTAA
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