mRNA_L-elsbetiae_contig7450.16337.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig7450.16337.1
Unique NamemRNA_L-elsbetiae_contig7450.16337.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig7450.16337.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig7450contigL-elsbetiae_contig7450:1407..4705 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size575
Cds size477
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig7450.16337.1prot_L-elsbetiae_contig7450.16337.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig7450 1407..1883 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816829.7817678-CDS-L-elsbetiae_contig7450:1406..18831622816829.7817678-CDS-L-elsbetiae_contig7450:1406..1883Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7450 1407..1883 -
1691683845.5074975-CDS-L-elsbetiae_contig7450:1406..18831691683845.5074975-CDS-L-elsbetiae_contig7450:1406..1883Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7450 1407..1883 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816829.7919958-UTR-L-elsbetiae_contig7450:1883..18971622816829.7919958-UTR-L-elsbetiae_contig7450:1883..1897Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig7450 1884..1897 -
1691683845.5188117-UTR-L-elsbetiae_contig7450:1883..18971691683845.5188117-UTR-L-elsbetiae_contig7450:1883..1897Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig7450 1884..1897 -
1622816829.8034308-UTR-L-elsbetiae_contig7450:4621..47051622816829.8034308-UTR-L-elsbetiae_contig7450:4621..4705Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig7450 4622..4705 -
1691683845.5269277-UTR-L-elsbetiae_contig7450:4621..47051691683845.5269277-UTR-L-elsbetiae_contig7450:4621..4705Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig7450 4622..4705 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig7450.16337.1

>prot_L-elsbetiae_contig7450.16337.1 ID=prot_L-elsbetiae_contig7450.16337.1|Name=mRNA_L-elsbetiae_contig7450.16337.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=159bp
MERAPAMEDPCNIKAPPAPVAARAPLAAPPASEAAPFSTPSPQAPAVDPI
PAMKAAAAAAAVAATEKDEPPAAVGEPAAAPAVEPPAAAPAVEASSAAEA
SEPAPVGAPAEGASEPAAAGAGSPAVEEGGGGEDAENKAEPAEPAEGNGG
KGDEMEVQE
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mRNA from alignment at L-elsbetiae_contig7450:1407..4705-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig7450.16337.1 ID=mRNA_L-elsbetiae_contig7450.16337.1|Name=mRNA_L-elsbetiae_contig7450.16337.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=3299bp|location=Sequence derived from alignment at L-elsbetiae_contig7450:1407..4705- (Laminarionema elsbetiae ELsaHSoW15)
CATCTCTGTTCAAGCGGGCCTGTTGTGGACGAAAGGACTTCTCTAGGTTA
AACTCGCGGATACTGAGCTCGTACTTCGTCTGAGGTGAGCAGTGTTTTTG
AGATATTAACCCGGGAACAAAACTTGCTCCTCCTGCTTGTTGGCGTGCGA
CTTCGGAGAGCGAGACAGGGAGAGAAAGAGCGGCCGCCTCCAAACATGCG
CCCAGAGAGCATCCTTCGGTCGCACTAGTACCTACAAGCGGCGTATTGGG
TGGCGGCTGGAGGCGGTATTCATTCTTGCCTCTCAGGCGCTCTCCATGGG
TGAAAAACCTCTCATTGCCGTTTTTTTATTTTAGATCTTCGTTTTTCCGC
CGTCGTTTCCCCCTCCTCCCCTCTACCGCCTCTCTGGCGTACGGAGAGCG
AAGCGGACCGCACTCTCTGGCTGCATCAACCCATCAACCCACACCCATCT
CAAAATAGTAGCCACAGGCTTTGCACGGCAGTCAATTCGGCACCTGAATT
GGAACATAACCCACACGGCTTCCATCTCCTGTGATAAAAAAAGCAGACGC
CAGCTGGTTGTCCGTTTAGCCAAACTTTTGAACAGGGGGGCTCATCATAC
ATCCATGCTGTTACTCGAGGCATGTCCATTGGAACGTGCTGCATACCTGA
GCAAGCAGTAGTATGCACGGGAAGACGATTTTTCCAAACAATGTGGGAGT
ATGTATGCATATGCGCTGGTATGTATATCAAGTCTAGAGATTCCACTTGC
TATCCAACAAAGCTACTGCTGCAACAATTCACGTAAATGAAAAAAAAACA
AAAAACGTAAGACAGCACAGGCAGCGACGCCGCCGCGGGCCCGCCCTGCT
ACATATAAGTAGTAGCAGTGTTCGCTTGATATGTAGACCGCGATAACGTG
TTTGTGCAGGTTATTTCAAAGTTAAAAGCAGGAACCTGCCCTCTGCCGTG
CGACGACCATGCAAATAGAAGTAGTAGGTATGTGTACCATGCGATACTTG
GCGGGCAGCGCTGACTCTCTCCCTCGCACCAACATCACTTCGTTATAATT
TAGCAAATGTGGTATGTAAGCCGGTCGCCCCGGTGGTCTAGTGATTTCAC
CTCGTACCCACTAGCAGCAAAGTCTGGAGTTCAATCCAAGCAGAAGGGTT
TCTTTTGCGACTCCGCAGGTGTAAGCGAATAAAGCTGAAAAGCTCTTGAG
TACCAAACTTCGATGTAATCACGTTGACGAGGGAAAGGGACAGCTGGACC
CTTCTCGCGATAAAACCCAAGGCCAGAACCGCAGAAGGAAGGTGGGGCAA
AAAAAGAAAAGAAAAAAGAAGAAAAAGCCCCGAGTGTTCACCTCCTCCTG
TGTGACCCCGGTTGGTTCTAGTTGTACAGACAAGTGCACTGCAAATCTAG
TACCTCTAAGTACACCGCAAGGTGTAGTACACGTCTCCACTTGGGGGGAC
TGTCACCAAAATTAATGGGAAGGACACACACACACACATGGTATGTACCA
ATATCAGCGGTCTACGTACGTCCAGCCTGTGAAAAATGCAAAGAGGCGTT
TCAAGGGGACTGCAGTTATAATAGACACACTAACCTTCCTTCACCGCCCC
GGACTACCTACTGGCACACAGCCAGCAGGCGTGTGGGATGTTAACATACT
GTTGTAGTACATCCATATGACTCTCACGGTCTACGTCGAAAGCGGGAGCT
GAAACGGCCCACAGCAAAAAAATCATACATAATGACAGACAGACAGACAG
ACAGGCAGTTCTGTTTCTACGCAAGACAGACGTACGGAGTACCAGTACAC
AGTAGTAGTTTGTGAACCCTGTCTTGCTCTTTTTCGACGGATCATTGAAG
ACCTCGACCAAGCTGCATCGCCCTGGGCCAGCAGGGACGCCAACATCTTC
TCCGTTTCTGTTTTTCTTTTCCTCTGTCGGCGCAACTTTTGGGGTCCGAA
CTGAGTTTACATATAATATCAGTTCGTTCCCGCGCCGAACTTTTTTCTTA
TTTGCGGGTTGTAAACTAATATCGCGATGTACCCACAACCTTGGGAATCG
GAACCCTCTTCAGCCCTTTTCCCATTTGTTGATCTCCATGCCCAGTAAAT
ATAGTATTTATTGCTTTTGCACGTCCCGGAAATCGATCTGCTGAGCGCCC
GAGAAAAAAACTTGCTGGCCGACATTCCGATGTTCCAATTGAGGCGACCG
TGCCGCACGCGCGTGTGGTTCAGAAAAGCGGCTCCTTCACACGGTAGTCT
ACGCAGGTTTTTGGTCGGCGAAACATATGGGATCAAGTATGGAATCGGGG
AATGTTTGGTGGGTCGGTGGTTAGGGTTACGGTTACGGTTACGGTTACGG
AACCCTTACCACTCTATTTCACATGCAAACCAATATTCCCCGTTTTTTCT
CGCGAAGGCAGTCAGTCCCCTTCACAGCAGTCGGTGGTTAGGGTTACGGT
TACGGTTACGGTTACGGAACCCTTACCACTCTATTTCACATGCAAACCAA
TATTCCCCGTTTTTTCTCGCGAAGGCAGTCAGTCCCCTTCACAGCAGCAG
CAGCAGCAGCAGCAGCGCGGCGTCGCAATGCTTGTCGACCAAGCTTTCTT
TTTCGCCGAGCTCTTTTTGTCGCTTATTTGCTTCTCATCATTCCTGGCAT
GCATAACTCTTTCGACGAAAAAACTCCCCTTTAAAAAAGAAAAACAGGTT
TGTCGGTCGTATCCTACCCCCCCCCCTCGGTGCCCCCCGTGCCCCCTGTC
ACCTTCCTCATCGCCCCAGCTCTCCACCGTTTCTCTCTCACGGTGCTCTC
GCGACCAGGACCCGTACAGCCTATGGAAAGAGCCCCCGCCATGGAAGACC
CTTGCAACATTAAGGCGCCGCCGGCACCTGTTGCGGCACGGGCACCGTTG
GCAGCGCCGCCGGCCTCCGAAGCCGCTCCGTTCTCGACCCCTAGCCCTCA
GGCCCCGGCGGTGGACCCCATCCCGGCGATGAAGGCCGCTGCGGCGGCGG
CGGCGGTGGCGGCGACGGAGAAGGACGAACCGCCGGCCGCGGTCGGCGAG
CCCGCCGCTGCTCCTGCCGTGGAGCCCCCTGCTGCTGCTCCTGCTGTCGA
AGCTTCTTCTGCGGCGGAAGCCAGTGAGCCTGCCCCTGTCGGAGCTCCCG
CGGAGGGAGCCAGCGAGCCCGCTGCCGCTGGTGCTGGATCGCCGGCTGTG
GAAGAGGGCGGCGGCGGGGAAGATGCCGAGAATAAGGCGGAGCCCGCGGA
GCCCGCGGAGGGGAACGGGGGCAAGGGGGACGAAATGGAGGTCCAGGAG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig7450:1407..4705-

>mRNA_L-elsbetiae_contig7450.16337.1 ID=mRNA_L-elsbetiae_contig7450.16337.1|Name=mRNA_L-elsbetiae_contig7450.16337.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=954bp|location=Sequence derived from alignment at L-elsbetiae_contig7450:1407..4705- (Laminarionema elsbetiae ELsaHSoW15)
ATGGAAAGAGCCCCCGCCATGGAAGACCCTTGCAACATTAAGGCGCCGCC
GGCACCTGTTGCGGCACGGGCACCGTTGGCAGCGCCGCCGGCCTCCGAAG
CCGCTCCGTTCTCGACCCCTAGCCCTCAGGCCCCGGCGGTGGACCCCATC
CCGGCGATGAAGGCCGCTGCGGCGGCGGCGGCGGTGGCGGCGACGGAGAA
GGACGAACCGCCGGCCGCGGTCGGCGAGCCCGCCGCTGCTCCTGCCGTGG
AGCCCCCTGCTGCTGCTCCTGCTGTCGAAGCTTCTTCTGCGGCGGAAGCC
AGTGAGCCTGCCCCTGTCGGAGCTCCCGCGGAGGGAGCCAGCGAGCCCGC
TGCCGCTGGTGCTGGATCGCCGGCTGTGGAAGAGGGCGGCGGCGGGGAAG
ATGCCGAGAATAAGGCGGAGCCCGCGGAGCCCGCGGAGGGGAACGGGGGC
AAGGGGGACGAAATGGAGGTCCAGGAGATGGAAAGAGCCCCCGCCATGGA
AGACCCTTGCAACATTAAGGCGCCGCCGGCACCTGTTGCGGCACGGGCAC
CGTTGGCAGCGCCGCCGGCCTCCGAAGCCGCTCCGTTCTCGACCCCTAGC
CCTCAGGCCCCGGCGGTGGACCCCATCCCGGCGATGAAGGCCGCTGCGGC
GGCGGCGGCGGTGGCGGCGACGGAGAAGGACGAACCGCCGGCCGCGGTCG
GCGAGCCCGCCGCTGCTCCTGCCGTGGAGCCCCCTGCTGCTGCTCCTGCT
GTCGAAGCTTCTTCTGCGGCGGAAGCCAGTGAGCCTGCCCCTGTCGGAGC
TCCCGCGGAGGGAGCCAGCGAGCCCGCTGCCGCTGGTGCTGGATCGCCGG
CTGTGGAAGAGGGCGGCGGCGGGGAAGATGCCGAGAATAAGGCGGAGCCC
GCGGAGCCCGCGGAGGGGAACGGGGGCAAGGGGGACGAAATGGAGGTCCA
GGAG
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