mRNA_L-elsbetiae_contig7348.16221.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig7348.16221.1
Unique NamemRNA_L-elsbetiae_contig7348.16221.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig7348.16221.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig7348contigL-elsbetiae_contig7348:5434..6004 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size571
Cds size429
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816818.0127108-CDS-L-elsbetiae_contig7348:5433..58621622816818.0127108-CDS-L-elsbetiae_contig7348:5433..5862Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7348 5434..5862 +
1691683836.6335275-CDS-L-elsbetiae_contig7348:5433..58621691683836.6335275-CDS-L-elsbetiae_contig7348:5433..5862Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7348 5434..5862 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816818.0264306-UTR-L-elsbetiae_contig7348:5862..60041622816818.0264306-UTR-L-elsbetiae_contig7348:5862..6004Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig7348 5863..6004 +
1691683836.6452243-UTR-L-elsbetiae_contig7348:5862..60041691683836.6452243-UTR-L-elsbetiae_contig7348:5862..6004Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig7348 5863..6004 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig7348.16221.1prot_L-elsbetiae_contig7348.16221.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig7348 5434..5862 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig7348.16221.1

>prot_L-elsbetiae_contig7348.16221.1 ID=prot_L-elsbetiae_contig7348.16221.1|Name=mRNA_L-elsbetiae_contig7348.16221.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=143bp
RGGRQLFLPGASVGGWSCEAPATATSTSSSTPAAVWGRSHPKGGTADTAG
ATEEGTAPLPYFLLLLSSRSGRFVGRAAVRDFRGEGEWCRRRRPRELPVL
LLKAHCCRCFFEDFGRCYLHSVLRLGPLLASKGWQTSDEVDS*
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mRNA from alignment at L-elsbetiae_contig7348:5434..6004+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig7348.16221.1 ID=mRNA_L-elsbetiae_contig7348.16221.1|Name=mRNA_L-elsbetiae_contig7348.16221.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=571bp|location=Sequence derived from alignment at L-elsbetiae_contig7348:5434..6004+ (Laminarionema elsbetiae ELsaHSoW15)
AGAGGTGGCCGTCAGCTGTTTCTCCCCGGCGCCTCGGTCGGTGGTTGGTC
CTGTGAGGCACCTGCGACAGCGACGAGCACGAGCTCGTCCACCCCAGCGG
CGGTCTGGGGTCGGAGCCACCCCAAGGGTGGGACAGCAGACACAGCGGGA
GCAACCGAGGAGGGGACGGCTCCTCTTCCGTACTTTCTTCTTCTTCTTTC
CTCTCGTTCTGGTCGATTCGTCGGTCGTGCTGCTGTGCGCGACTTTCGCG
GCGAGGGGGAGTGGTGCCGGCGGCGTCGACCTCGAGAGCTACCGGTACTC
CTGCTGAAGGCGCACTGCTGCCGCTGCTTCTTCGAGGATTTTGGCCGTTG
TTATCTCCATTCGGTGCTTCGTCTCGGCCCTCTTCTCGCTTCCAAAGGCT
GGCAAACCTCCGACGAAGTTGATTCATGACGATCTCTACTCTCCCTGCCT
GCCTACCTAGGCTGTGTCGTCCACAGTAAACAGGTAAACAGCCCGCCGGG
CCGCTTTTTTTTTCGGGGGGCTCCGCTAGGATTGTTTTCCCCTGTATCCC
CAGTCTCTCGCTCTCGAAAAA
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Coding sequence (CDS) from alignment at L-elsbetiae_contig7348:5434..6004+

>mRNA_L-elsbetiae_contig7348.16221.1 ID=mRNA_L-elsbetiae_contig7348.16221.1|Name=mRNA_L-elsbetiae_contig7348.16221.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=858bp|location=Sequence derived from alignment at L-elsbetiae_contig7348:5434..6004+ (Laminarionema elsbetiae ELsaHSoW15)
AGAGGTGGCCGTCAGCTGTTTCTCCCCGGCGCCTCGGTCGGTGGTTGGTC
CTGTGAGGCACCTGCGACAGCGACGAGCACGAGCTCGTCCACCCCAGCGG
CGGTCTGGGGTCGGAGCCACCCCAAGGGTGGGACAGCAGACACAGCGGGA
GCAACCGAGGAGGGGACGGCTCCTCTTCCGTACTTTCTTCTTCTTCTTTC
CTCTCGTTCTGGTCGATTCGTCGGTCGTGCTGCTGTGCGCGACTTTCGCG
GCGAGGGGGAGTGGTGCCGGCGGCGTCGACCTCGAGAGCTACCGGTACTC
CTGCTGAAGGCGCACTGCTGCCGCTGCTTCTTCGAGGATTTTGGCCGTTG
TTATCTCCATTCGGTGCTTCGTCTCGGCCCTCTTCTCGCTTCCAAAGGCT
GGCAAACCTCCGACGAAGTTGATTCATGAAGAGGTGGCCGTCAGCTGTTT
CTCCCCGGCGCCTCGGTCGGTGGTTGGTCCTGTGAGGCACCTGCGACAGC
GACGAGCACGAGCTCGTCCACCCCAGCGGCGGTCTGGGGTCGGAGCCACC
CCAAGGGTGGGACAGCAGACACAGCGGGAGCAACCGAGGAGGGGACGGCT
CCTCTTCCGTACTTTCTTCTTCTTCTTTCCTCTCGTTCTGGTCGATTCGT
CGGTCGTGCTGCTGTGCGCGACTTTCGCGGCGAGGGGGAGTGGTGCCGGC
GGCGTCGACCTCGAGAGCTACCGGTACTCCTGCTGAAGGCGCACTGCTGC
CGCTGCTTCTTCGAGGATTTTGGCCGTTGTTATCTCCATTCGGTGCTTCG
TCTCGGCCCTCTTCTCGCTTCCAAAGGCTGGCAAACCTCCGACGAAGTTG
ATTCATGA
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