mRNA_L-elsbetiae_contig7334.16208.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig7334.16208.1
Unique NamemRNA_L-elsbetiae_contig7334.16208.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig7334.16208.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig7334contigL-elsbetiae_contig7334:1293..2080 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size788
Cds size231
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig7334.16208.1prot_L-elsbetiae_contig7334.16208.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig7334 1390..1620 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816816.8458138-UTR-L-elsbetiae_contig7334:1292..13891622816816.8458138-UTR-L-elsbetiae_contig7334:1292..1389Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig7334 1293..1389 +
1691683835.8015864-UTR-L-elsbetiae_contig7334:1292..13891691683835.8015864-UTR-L-elsbetiae_contig7334:1292..1389Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig7334 1293..1389 +
1622816816.8692648-UTR-L-elsbetiae_contig7334:1620..20801622816816.8692648-UTR-L-elsbetiae_contig7334:1620..2080Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig7334 1621..2080 +
1691683835.833144-UTR-L-elsbetiae_contig7334:1620..20801691683835.833144-UTR-L-elsbetiae_contig7334:1620..2080Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig7334 1621..2080 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816816.8588734-CDS-L-elsbetiae_contig7334:1389..16201622816816.8588734-CDS-L-elsbetiae_contig7334:1389..1620Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7334 1390..1620 +
1691683835.8195865-CDS-L-elsbetiae_contig7334:1389..16201691683835.8195865-CDS-L-elsbetiae_contig7334:1389..1620Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7334 1390..1620 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig7334.16208.1

>prot_L-elsbetiae_contig7334.16208.1 ID=prot_L-elsbetiae_contig7334.16208.1|Name=mRNA_L-elsbetiae_contig7334.16208.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=77bp
MKTTVTGRSNDLHHVKQMAVPEVREMKKFTSKDYSDRRQAMISIWSNLRK
HLLFCNKEHFESKKAEKIKKAHPSTK*
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mRNA from alignment at L-elsbetiae_contig7334:1293..2080+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig7334.16208.1 ID=mRNA_L-elsbetiae_contig7334.16208.1|Name=mRNA_L-elsbetiae_contig7334.16208.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=788bp|location=Sequence derived from alignment at L-elsbetiae_contig7334:1293..2080+ (Laminarionema elsbetiae ELsaHSoW15)
GATTTGGAAGCGCGAGAGAAAGCTGGATGGAAGTATACTGACCGCCCTGT
ACCCGCTGACGGCTTCTATAATTCAGACGACAGTGACTTCATCGACGATG
AAGACGACAGTGACTGGACGGTCGAATGATTTGCACCATGTGAAGCAGAT
GGCAGTGCCCGAAGTCCGAGAAATGAAAAAGTTCACCAGCAAAGATTACT
CGGATCGCAGGCAGGCGATGATCTCTATCTGGTCTAATCTTAGAAAGCAC
CTCCTCTTTTGCAATAAGGAACACTTCGAATCCAAAAAAGCGGAGAAAAT
CAAGAAAGCACACCCTTCTACGAAATGACACAATATCATCCTGATCAAGT
TGGAAAAACCTCGGTTTGACCAAGCCTCCATTTGGGTCCATTTAGACTCA
TCCCTCTTCTGAGCAGTGGAGTAGGGAGGGCGGCCACTCCACGCCGACGA
TGGACTGGTTGAAGTCGCTACCGAATTCGATCTGCTGCAGCCCCGGTGGC
CACTCCACGCCGACGATGGGCTGGTTGAAGTCGTGGCCGAACTCGATCTG
CTGCAGCCCCGGTGGCCACTCCACGCCGACGATGGGCTGCTTGAAGGCCC
AACCGAACTTGATCTGCTCCAGCCCCGGTGGCCACCCCACGCCGACGATG
GGCTAATGATCTGCTGCAGCGCCGGTGGCCACTCCACGCCGACGATGGAC
TGGTTGAAGTCTAACCCGAACTCGATCTGCTGCAGCCCCGGTGGCCAATC
CACGCCGACGATGGGCTGGTTGAAGGCCCCAGTTAACT
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Coding sequence (CDS) from alignment at L-elsbetiae_contig7334:1293..2080+

>mRNA_L-elsbetiae_contig7334.16208.1 ID=mRNA_L-elsbetiae_contig7334.16208.1|Name=mRNA_L-elsbetiae_contig7334.16208.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=462bp|location=Sequence derived from alignment at L-elsbetiae_contig7334:1293..2080+ (Laminarionema elsbetiae ELsaHSoW15)
ATGAAGACGACAGTGACTGGACGGTCGAATGATTTGCACCATGTGAAGCA
GATGGCAGTGCCCGAAGTCCGAGAAATGAAAAAGTTCACCAGCAAAGATT
ACTCGGATCGCAGGCAGGCGATGATCTCTATCTGGTCTAATCTTAGAAAG
CACCTCCTCTTTTGCAATAAGGAACACTTCGAATCCAAAAAAGCGGAGAA
AATCAAGAAAGCACACCCTTCTACGAAATGAATGAAGACGACAGTGACTG
GACGGTCGAATGATTTGCACCATGTGAAGCAGATGGCAGTGCCCGAAGTC
CGAGAAATGAAAAAGTTCACCAGCAAAGATTACTCGGATCGCAGGCAGGC
GATGATCTCTATCTGGTCTAATCTTAGAAAGCACCTCCTCTTTTGCAATA
AGGAACACTTCGAATCCAAAAAAGCGGAGAAAATCAAGAAAGCACACCCT
TCTACGAAATGA
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