mRNA_L-elsbetiae_contig7297.16165.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig7297.16165.1
Unique NamemRNA_L-elsbetiae_contig7297.16165.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
BLAST of mRNA_L-elsbetiae_contig7297.16165.1 vs. uniprot
Match: D7FPH4_ECTSI (Protein kinase domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FPH4_ECTSI)

HSP 1 Score: 114 bits (286), Expect = 1.990e-31
Identity = 51/59 (86.44%), Postives = 56/59 (94.92%), Query Frame = 2
Query:    2 LRARMDAARGGLGFWPGVRHATELASVMNYLHNDAIPGMCVLHRDLKPDNLGFQGHRMK 178
            LRARMDAARGGLGFWPGVRHA ELASVM YLH+DA+PGMC+LHRDLKPDNLGF+G+ MK
Sbjct:   38 LRARMDAARGGLGFWPGVRHAVELASVMAYLHDDAMPGMCILHRDLKPDNLGFRGNVMK 96          
BLAST of mRNA_L-elsbetiae_contig7297.16165.1 vs. uniprot
Match: A0A6H5JJZ2_9PHAE (Protein kinase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JJZ2_9PHAE)

HSP 1 Score: 114 bits (286), Expect = 7.230e-29
Identity = 51/59 (86.44%), Postives = 56/59 (94.92%), Query Frame = 2
Query:    2 LRARMDAARGGLGFWPGVRHATELASVMNYLHNDAIPGMCVLHRDLKPDNLGFQGHRMK 178
            LRARMDAARGGLGFWPGVRHA ELASVM YLH+DA+PGMC+LHRDLKPDNLGF+G+ MK
Sbjct:  177 LRARMDAARGGLGFWPGVRHAVELASVMAYLHDDAMPGMCILHRDLKPDNLGFRGNVMK 235          
BLAST of mRNA_L-elsbetiae_contig7297.16165.1 vs. uniprot
Match: A0A6H5KVG2_9PHAE (Protein kinase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KVG2_9PHAE)

HSP 1 Score: 69.7 bits (169), Expect = 1.370e-12
Identity = 27/53 (50.94%), Postives = 40/53 (75.47%), Query Frame = 2
Query:    2 LRARMDAARGGLGFWPGVRHATELASVMNYLHNDAIPGMCVLHRDLKPDNLGF 160
            LR R+D   GGLG  P V++  +LAS ++Y+H+  +PG+ ++HRDLKPDN+GF
Sbjct:  231 LRGRLDKCGGGLGVGPAVKYGLQLASALSYMHDGGLPGIILMHRDLKPDNIGF 283          
BLAST of mRNA_L-elsbetiae_contig7297.16165.1 vs. uniprot
Match: D7FJD0_ECTSI (Protein kinase domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FJD0_ECTSI)

HSP 1 Score: 69.7 bits (169), Expect = 1.760e-12
Identity = 27/53 (50.94%), Postives = 40/53 (75.47%), Query Frame = 2
Query:    2 LRARMDAARGGLGFWPGVRHATELASVMNYLHNDAIPGMCVLHRDLKPDNLGF 160
            LR R+D   GGLG  P V++  +LAS ++Y+H+  +PG+ ++HRDLKPDN+GF
Sbjct:  287 LRGRLDKCGGGLGVGPAVKYGLQLASALSYMHDGGLPGIILMHRDLKPDNIGF 339          
BLAST of mRNA_L-elsbetiae_contig7297.16165.1 vs. uniprot
Match: A0A7R9WTW5_9STRA (Hypothetical protein n=1 Tax=Craspedostauros australis TaxID=1486917 RepID=A0A7R9WTW5_9STRA)

HSP 1 Score: 56.6 bits (135), Expect = 7.320e-8
Identity = 23/36 (63.89%), Postives = 28/36 (77.78%), Query Frame = 2
Query:   53 VRHATELASVMNYLHNDAIPGMCVLHRDLKPDNLGF 160
            +R+A  +AS M Y H DA+PG  VLHRDLKPDN+GF
Sbjct:  316 LRYARSIASAMRYCHEDAVPGSTVLHRDLKPDNIGF 351          
BLAST of mRNA_L-elsbetiae_contig7297.16165.1 vs. uniprot
Match: A0A7S2S189_9STRA (Hypothetical protein n=1 Tax=Eucampia antarctica TaxID=49252 RepID=A0A7S2S189_9STRA)

HSP 1 Score: 54.7 bits (130), Expect = 3.520e-7
Identity = 23/33 (69.70%), Postives = 26/33 (78.79%), Query Frame = 2
Query:   62 ATELASVMNYLHNDAIPGMCVLHRDLKPDNLGF 160
            A  +A  M YLH+DAIPG  VLHRDLKPDN+GF
Sbjct:  495 ARSIAEAMEYLHSDAIPGCMVLHRDLKPDNIGF 527          
BLAST of mRNA_L-elsbetiae_contig7297.16165.1 vs. uniprot
Match: A0A7S2LC32_9STRA (Hypothetical protein n=2 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2LC32_9STRA)

HSP 1 Score: 53.1 bits (126), Expect = 1.200e-6
Identity = 24/52 (46.15%), Postives = 30/52 (57.69%), Query Frame = 2
Query:    5 RARMDAARGGLGFWPGVRHATELASVMNYLHNDAIPGMCVLHRDLKPDNLGF 160
            R R    R  L +   + HA  LA  + Y H  A+PG  VLHRD+KPDN+GF
Sbjct:  148 RRRRFFKRKQLSYLEVLNHARSLADALGYCHGKAVPGTLVLHRDVKPDNIGF 199          
BLAST of mRNA_L-elsbetiae_contig7297.16165.1 vs. uniprot
Match: A0A6H5JZF2_9PHAE (Protein kinase domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JZF2_9PHAE)

HSP 1 Score: 53.1 bits (126), Expect = 1.230e-6
Identity = 20/36 (55.56%), Postives = 28/36 (77.78%), Query Frame = 2
Query:   53 VRHATELASVMNYLHNDAIPGMCVLHRDLKPDNLGF 160
            +R   +LA  + Y+HN+A+PG  V+HRDLKPDN+GF
Sbjct:  395 LRQGLQLAEALQYMHNEAMPGKLVVHRDLKPDNIGF 430          
BLAST of mRNA_L-elsbetiae_contig7297.16165.1 vs. uniprot
Match: A0A4D9DAK6_9STRA (Protein kinase domain-containing protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9DAK6_9STRA)

HSP 1 Score: 52.8 bits (125), Expect = 1.670e-6
Identity = 18/37 (48.65%), Postives = 31/37 (83.78%), Query Frame = 2
Query:   53 VRHATELASVMNYLHNDAIPGMCVLHRDLKPDNLGFQ 163
            +++A ++A  + Y+H++A+PG  V+HRDLKPDN+GF+
Sbjct:  309 LKYALQMAEALKYMHDEALPGYAVMHRDLKPDNVGFK 345          
BLAST of mRNA_L-elsbetiae_contig7297.16165.1 vs. uniprot
Match: A0A7S3DWF4_9STRA (Hypothetical protein (Fragment) n=1 Tax=Amphiprora paludosa TaxID=265537 RepID=A0A7S3DWF4_9STRA)

HSP 1 Score: 50.4 bits (119), Expect = 1.800e-6
Identity = 26/52 (50.00%), Postives = 29/52 (55.77%), Query Frame = 2
Query:    5 RARMDAARGGLGFWPGVRHATELASVMNYLHNDAIPGMCVLHRDLKPDNLGF 160
            R R    R    F   +R A  +A  M YLH  AI G  VLHRDLKPDN+GF
Sbjct:    6 RRRRFWKRKQFSFVDVLRIARSIAEAMTYLHESAIMGSIVLHRDLKPDNIGF 57          
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig7297.16165.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FPH4_ECTSI1.990e-3186.44Protein kinase domain-containing protein n=1 Tax=E... [more]
A0A6H5JJZ2_9PHAE7.230e-2986.44Protein kinase domain-containing protein n=1 Tax=E... [more]
A0A6H5KVG2_9PHAE1.370e-1250.94Protein kinase domain-containing protein n=1 Tax=E... [more]
D7FJD0_ECTSI1.760e-1250.94Protein kinase domain-containing protein n=1 Tax=E... [more]
A0A7R9WTW5_9STRA7.320e-863.89Hypothetical protein n=1 Tax=Craspedostauros austr... [more]
A0A7S2S189_9STRA3.520e-769.70Hypothetical protein n=1 Tax=Eucampia antarctica T... [more]
A0A7S2LC32_9STRA1.200e-646.15Hypothetical protein n=2 Tax=Leptocylindrus danicu... [more]
A0A6H5JZF2_9PHAE1.230e-655.56Protein kinase domain-containing protein n=2 Tax=E... [more]
A0A4D9DAK6_9STRA1.670e-648.65Protein kinase domain-containing protein n=2 Tax=M... [more]
A0A7S3DWF4_9STRA1.800e-650.00Hypothetical protein (Fragment) n=1 Tax=Amphiprora... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig7297contigL-elsbetiae_contig7297:184..363 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size180
Cds size180
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816812.526142-CDS-L-elsbetiae_contig7297:183..3631622816812.526142-CDS-L-elsbetiae_contig7297:183..363Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7297 184..363 +
1691683832.3302412-CDS-L-elsbetiae_contig7297:183..3631691683832.3302412-CDS-L-elsbetiae_contig7297:183..363Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7297 184..363 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig7297.16165.1prot_L-elsbetiae_contig7297.16165.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig7297 184..363 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig7297.16165.1

>prot_L-elsbetiae_contig7297.16165.1 ID=prot_L-elsbetiae_contig7297.16165.1|Name=mRNA_L-elsbetiae_contig7297.16165.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=60bp
SEGEDGRGEGRAGFLAGGPARDGAGVGDELPAQRRHPGDVRLAPRPEAGQ
PGLPRTPDEA
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mRNA from alignment at L-elsbetiae_contig7297:184..363+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig7297.16165.1 ID=mRNA_L-elsbetiae_contig7297.16165.1|Name=mRNA_L-elsbetiae_contig7297.16165.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=180bp|location=Sequence derived from alignment at L-elsbetiae_contig7297:184..363+ (Laminarionema elsbetiae ELsaHSoW15)
TCTGAGGGCGAGGATGGACGCGGCGAGGGGCGGGCTGGGTTTCTGGCCGG GGGTCCGGCACGCGACGGAGCTGGCGTCGGTGATGAACTACCTGCACAAC GACGCCATCCCGGGGATGTGCGTCTTGCACCGCGACCTGAAGCCGGACAA CCTGGGCTTCCAAGGACACCGGATGAAGCT
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Coding sequence (CDS) from alignment at L-elsbetiae_contig7297:184..363+

>mRNA_L-elsbetiae_contig7297.16165.1 ID=mRNA_L-elsbetiae_contig7297.16165.1|Name=mRNA_L-elsbetiae_contig7297.16165.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=360bp|location=Sequence derived from alignment at L-elsbetiae_contig7297:184..363+ (Laminarionema elsbetiae ELsaHSoW15)
TCTGAGGGCGAGGATGGACGCGGCGAGGGGCGGGCTGGGTTTCTGGCCGG
GGGTCCGGCACGCGACGGAGCTGGCGTCGGTGATGAACTACCTGCACAAC
GACGCCATCCCGGGGATGTGCGTCTTGCACCGCGACCTGAAGCCGGACAA
CCTGGGCTTCCAAGGACACCGGATGAAGCTTCTGAGGGCGAGGATGGACG
CGGCGAGGGGCGGGCTGGGTTTCTGGCCGGGGGTCCGGCACGCGACGGAG
CTGGCGTCGGTGATGAACTACCTGCACAACGACGCCATCCCGGGGATGTG
CGTCTTGCACCGCGACCTGAAGCCGGACAACCTGGGCTTCCAAGGACACC
GGATGAAGCT
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