mRNA_L-elsbetiae_contig7253.16118.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig7253.16118.1
Unique NamemRNA_L-elsbetiae_contig7253.16118.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig7253.16118.1 vs. uniprot
Match: A0A6H5L3E5_9PHAE (Bromo domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L3E5_9PHAE)

HSP 1 Score: 198 bits (503), Expect = 2.300e-51
Identity = 96/109 (88.07%), Postives = 101/109 (92.66%), Query Frame = 2 
Query:    2 GVSFRVSMRLSNEMPEFMVVASKYDEATTFPWRSEMHIQMAFMEEPGEPPRIYEGTLVGVKAKDPESDVMPWECLLVEWDDEPGMNTVNPWEVEAVSAATAAARRRAPG 328
            G  FRVSMRLSNEMPEF+VVASKYDEA TF WRSEMHIQMAFMEEPGEPPRI+EGTLVGVK KDP + +MPWECL+VEWDDE GMNTVNPWEVEAVSAATAAARRRAPG
Sbjct:  643 GGVFRVSMRLSNEMPEFVVVASKYDEAMTFNWRSEMHIQMAFMEEPGEPPRIFEGTLVGVKPKDPRTQMMPWECLIVEWDDEAGMNTVNPWEVEAVSAATAAARRRAPG 751
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BLAST of mRNA_L-elsbetiae_contig7253.16118.1 vs. uniprot
Match: D7G6R7_ECTSI (Bromo domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G6R7_ECTSI)

HSP 1 Score: 194 bits (493), Expect = 4.340e-49
Identity = 94/109 (86.24%), Postives = 99/109 (90.83%), Query Frame = 2 
Query:    2 GVSFRVSMRLSNEMPEFMVVASKYDEATTFPWRSEMHIQMAFMEEPGEPPRIYEGTLVGVKAKDPESDVMPWECLLVEWDDEPGMNTVNPWEVEAVSAATAAARRRAPG 328
            G   RVSMRLSNEMPEF+VV SKYDEA TF WRSEMHIQMAFMEEPGEPPRI+EGTLVGVK KDP + +MPWECL+VEWDDE GMNTVNPWEVEAVSAATAAARRRAPG
Sbjct: 2056 GGVLRVSMRLSNEMPEFVVVTSKYDEAMTFNWRSEMHIQMAFMEEPGEPPRIFEGTLVGVKPKDPRTQMMPWECLMVEWDDEAGMNTVNPWEVEAVSAATAAARRRAPG 2164
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig7253.16118.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5L3E5_9PHAE2.300e-5188.07Bromo domain-containing protein n=1 Tax=Ectocarpus... [more]
D7G6R7_ECTSI4.340e-4986.24Bromo domain-containing protein n=1 Tax=Ectocarpus... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig7253contigL-elsbetiae_contig7253:6417..8583 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score193.4
Seed ortholog evalue5.7e-47
Seed eggNOG ortholog2880.D7G6R7
KEGG koko:K03125
KEGG Pathwayko03022,map03022
Hectar predicted targeting categoryother localisation
EggNOG free text desc.negative regulation of protein autoubiquitination
EggNOG OGsCOG5179@1,KOG0008@2759
COG Functional cat.K
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01001,ko03021,ko03036
Exons2
Model size1711
Cds size327
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig7253.16118.1prot_L-elsbetiae_contig7253.16118.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig7253 7779..8561 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816808.3440251-UTR-L-elsbetiae_contig7253:6416..77781622816808.3440251-UTR-L-elsbetiae_contig7253:6416..7778Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig7253 6417..7778 -
1691683829.1625445-UTR-L-elsbetiae_contig7253:6416..77781691683829.1625445-UTR-L-elsbetiae_contig7253:6416..7778Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig7253 6417..7778 -
1622816808.3789086-UTR-L-elsbetiae_contig7253:8561..85831622816808.3789086-UTR-L-elsbetiae_contig7253:8561..8583Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig7253 8562..8583 -
1691683829.1983702-UTR-L-elsbetiae_contig7253:8561..85831691683829.1983702-UTR-L-elsbetiae_contig7253:8561..8583Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig7253 8562..8583 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816808.3541965-CDS-L-elsbetiae_contig7253:7778..79871622816808.3541965-CDS-L-elsbetiae_contig7253:7778..7987Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7253 7779..7987 -
1691683829.1763842-CDS-L-elsbetiae_contig7253:7778..79871691683829.1763842-CDS-L-elsbetiae_contig7253:7778..7987Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7253 7779..7987 -
1622816808.3642673-CDS-L-elsbetiae_contig7253:8443..85611622816808.3642673-CDS-L-elsbetiae_contig7253:8443..8561Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7253 8444..8561 -
1691683829.1872914-CDS-L-elsbetiae_contig7253:8443..85611691683829.1872914-CDS-L-elsbetiae_contig7253:8443..8561Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7253 8444..8561 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig7253.16118.1

>prot_L-elsbetiae_contig7253.16118.1 ID=prot_L-elsbetiae_contig7253.16118.1|Name=mRNA_L-elsbetiae_contig7253.16118.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=109bp
MRLSNEMPEFMVVASKYDEATTFPWRSEMHIQMAFMEEPGEPPRIYEGTL
VGVKAKDPESDVMPWECLLVEWDDEPGMNTVNPWEVEAVSAATAAARRRA
PGTLAQQQ*
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mRNA from alignment at L-elsbetiae_contig7253:6417..8583-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig7253.16118.1 ID=mRNA_L-elsbetiae_contig7253.16118.1|Name=mRNA_L-elsbetiae_contig7253.16118.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=2167bp|location=Sequence derived from alignment at L-elsbetiae_contig7253:6417..8583- (Laminarionema elsbetiae ELsaHSoW15)
GGGGGTTTCTTTCCGAGTGTCGATGCGGCTGAGCAATGAGATGCCGGAGT
TCATGGTCGTTGCGTCTAAGTACGACGAAGCCACGACCTTCCCCTGGAGG
TCGGAAATGCACATCCAGATGGCCTTCATGGAAGAACCAGGTATCACAGG
AATACATATGATACGTATCGTACATGCATACGAGACAGACAGACGGGATC
TCGAGTATTCAGTTGCGCGGTCGTGCTTACGCCATGCCATGCCATGCCTG
CCATGATTTGCAGGGGGCCACGTGTGTTTTGGGCACTACTGTCTCGTGGT
GGTATGTATGGTGGTGTCGGCTGGTCAACAGTAGCGCTTGCTGTTTGGGT
CGTGTTTTGGTTGCCCTTGTGCAGTTGGACCCTCGGGTGCTGCTGCTATC
AAGACGCGCACGAGGCAGGCGCTCCCCGAACCCCTTGCTGCTGCTGCGGC
CTGTAGCGTAGCACGGGAATGCCGCTTGGTTTCCAGCCCTGACAATAAAC
CACGTCCCAGCCCCCCTTGACCCTTCACTGCTTTGCCTTGTGCCTCCACC
CACAATCGTCGCTCGACGTGCTTACTGCCAATGACCACGTCTTCAGGAGA
GCCCCCACGCATCTACGAGGGCACGCTCGTAGGCGTGAAGGCCAAAGACC
CCGAGTCGGACGTGATGCCCTGGGAGTGCCTCCTGGTGGAGTGGGATGAC
GAGCCAGGCATGAACACGGTAAACCCGTGGGAGGTGGAGGCTGTTTCTGC
TGCCACGGCCGCGGCTCGCCGCCGAGCGCCGGGGACGCTTGCTCAGCAGC
AGTAGATGCACACCGGACCAAGCTGCGGCTGGTTGCGGTACGGATGGTTT
CGAGGCTTGCGTGTTGCAAAGGCTGAGCAAGCACTCAGCCGGAAAGTCCT
GCAGAGGGCAGGGAAGGGGATGTGGAGGCAGGCGGGTCTGGTTCCTTATT
GTCAGAGGGAATGACCGGTCTCTCGTTGTGGTTGACCCTCGCACACGGGT
GATTGCGTGTTTCGGTGGGGTGTGGTGTTGCTGAAAGCTGGCTCGCGGCC
GTTTTGCTGCAACAAGGGGATGGACGTTGGTGCCCGGTGTGTCCATCGGT
GCGCAAGGAAAAGGTATAGAAATGGGATGTTTTTGCTGCGTTGGTCTTTT
TTAGCTAGTGTTTTCTCGTTTTCTCTGTTTTGAGGTTGTTTGGGTCGTCG
ACACGGCCAAGAGCAAGCACCCTATAGTCAAGGGTGTGCACCCGTAGCGA
AGATGTCGTTTTTCGCGGGATATTTTTGTTTTCGTGTCTAGCGTGGACGG
CAGTACCAGTTGCTGCTGCTATAGATGACATAGCTTGGGTTATTTGTCCG
AGCGGCTTCATCTGTTGGGTGACTAGATTTCGAGTCAACGATATTGAGAA
CGATATAATCTACTCTTGCACGGGTAATTGGCTGTGTTAGTTCGGTAGCA
TGCCGATGCGATGTGGCGATAGATGTCTGGCTTTTATCTTGTCTTTGGTC
TTCTACGTCGGAGTATTATTTTACGCTTGCCCGACTTTTCTGTATTTGTG
ACAAACGAAGCCGAAGTCCCTCAAAACACAAAACGCAACAACACGCGTTT
TTCTTGCCTGTGGTGCTGCAAGTTTGTATCTGCGGGTGATTGACCCTGCG
AGTGCCCTCGAGGTGTGTTGTCCTATCGCCGTCTTTATAGATAGGCAGCG
TCACTGGTTGTGCGGTACTTTATGACTTAAATATTATATTATGGGCAAGT
GTTTGGGAAAAATATCTCGTGTGAAGTATGGTCTATGATCCGTAGTTTGC
GCGGTGCGGTAGATAATCAATTGTGAATGGATGCATCGACAGAGATAGAG
GTGGTGCTTTCCGAGCTCCTCGCTTCTTTGGTTTTGTCAAGTTGGCGATA
GTTTCTGATACGCGAAGGGAAGTGGAGGTACGCCGTTGTATGAATTATGA
TGGATTGTAGGGAGATGAGCACTTGGTGGGTAGATACTAGGTGGTCTTTG
CGTTTTGCCTCGTGACATCAGCCAAGTAGCGGTGCTGGCCGTGTCTGTAT
GTGATTTTATATAAAGCTCTTCGTTATACACTATTGAACTGATATTTTAC
GCACACGTATCCGTTCCATGTTCCGACTGGTCCTGACCTACACGAAACCG
GGTTACCATAAATGCCA
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Coding sequence (CDS) from alignment at L-elsbetiae_contig7253:6417..8583-

>mRNA_L-elsbetiae_contig7253.16118.1 ID=mRNA_L-elsbetiae_contig7253.16118.1|Name=mRNA_L-elsbetiae_contig7253.16118.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=654bp|location=Sequence derived from alignment at L-elsbetiae_contig7253:6417..8583- (Laminarionema elsbetiae ELsaHSoW15)
ATGCGGCTGAGCAATGAGATGCCGGAGTTCATGGTCGTTGCGTCTAAGTA
CGACGAAGCCACGACCTTCCCCTGGAGGTCGGAAATGCACATCCAGATGG
CCTTCATGGAAGAACCAGATGCGGCTGAGCAATGAGATGCCGGAGTTCAT
GGTCGTTGCGTCTAAGTACGACGAAGCCACGACCTTCCCCTGGAGGTCGG
AAATGCACATCCAGATGGCCTTCATGGAAGAACCAGGAGAGCCCCCACGC
ATCTACGAGGGCACGCTCGTAGGCGTGAAGGCCAAAGACCCCGAGTCGGA
CGTGATGCCCTGGGAGTGCCTCCTGGTGGAGTGGGATGACGAGCCAGGCA
TGAACACGGTAAACCCGTGGGAGGTGGAGGCTGTTTCTGCTGCCACGGCC
GCGGCTCGCCGCCGAGCGCCGGGGACGCTTGCTCAGCAGCAGTAGGAGAG
CCCCCACGCATCTACGAGGGCACGCTCGTAGGCGTGAAGGCCAAAGACCC
CGAGTCGGACGTGATGCCCTGGGAGTGCCTCCTGGTGGAGTGGGATGACG
AGCCAGGCATGAACACGGTAAACCCGTGGGAGGTGGAGGCTGTTTCTGCT
GCCACGGCCGCGGCTCGCCGCCGAGCGCCGGGGACGCTTGCTCAGCAGCA
GTAG
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