mRNA_L-elsbetiae_contig7223.16076.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig7223.16076.1
Unique NamemRNA_L-elsbetiae_contig7223.16076.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig7223.16076.1 vs. uniprot
Match: D7FUZ4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FUZ4_ECTSI)

HSP 1 Score: 147 bits (370), Expect = 5.880e-38
Identity = 84/127 (66.14%), Postives = 95/127 (74.80%), Query Frame = 1 
Query:   19 VLAEVPYSSGVLVALDPTRPTVFKITVGGGQGEQAGGGSG------PPTTVLVLGAIDGRQRDVLALTLRGRRLAALGPELAGAVDDYPEETKAQQAEENYLELKAAAAHFAKAYDEDGVSAAEQAG 381
            VLAE  YS GVLV L+P RPTV ++TVG GQG +A    G      PP  VL+LGA+DG QRDVLALTLRGRR AALGP +   VDDYPEETKA QA E+YLELKAAAA+FA AYDEDG SA  ++G
Sbjct:  257 VLAEGRYSPGVLVTLEPARPTVLRLTVGRGQGGEAAAAVGVRQAPTPPAVVLLLGAVDGIQRDVLALTLRGRRQAALGPGVT--VDDYPEETKAHQAHEDYLELKAAAANFASAYDEDGTSATSRSG 381
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BLAST of mRNA_L-elsbetiae_contig7223.16076.1 vs. uniprot
Match: A0A6H5JZQ7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JZQ7_9PHAE)

HSP 1 Score: 144 bits (364), Expect = 3.070e-36
Identity = 83/127 (65.35%), Postives = 94/127 (74.02%), Query Frame = 1 
Query:   19 VLAEVPYSSGVLVALDPTRPTVFKITVGGGQGEQAGGGSG------PPTTVLVLGAIDGRQRDVLALTLRGRRLAALGPELAGAVDDYPEETKAQQAEENYLELKAAAAHFAKAYDEDGVSAAEQAG 381
            VLAE  YSSGVLV L+P RPT  ++TVG  QG +A    G      PP  VL+LGA+DG QRDVLALTLRGRR AALGP +   VDDYPEETKA QA E+YLELKAAAA+FA AYDEDG SA  ++G
Sbjct:  707 VLAEGRYSSGVLVTLEPARPTALRLTVGRRQGGEAAAAVGVSQAPTPPAVVLLLGAVDGIQRDVLALTLRGRRQAALGPGIT--VDDYPEETKAHQAHEDYLELKAAAANFASAYDEDGTSATSKSG 831
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig7223.16076.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FUZ4_ECTSI5.880e-3866.14Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JZQ7_9PHAE3.070e-3665.35Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig7223contigL-elsbetiae_contig7223:464..2622 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons4
Model size642
Cds size639
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig7223.16076.1prot_L-elsbetiae_contig7223.16076.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig7223 466..2622 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816804.3297517-CDS-L-elsbetiae_contig7223:465..6601622816804.3297517-CDS-L-elsbetiae_contig7223:465..660Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7223 466..660 -
1691683826.0640473-CDS-L-elsbetiae_contig7223:465..6601691683826.0640473-CDS-L-elsbetiae_contig7223:465..660Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7223 466..660 -
1622816804.3409786-CDS-L-elsbetiae_contig7223:1061..12171622816804.3409786-CDS-L-elsbetiae_contig7223:1061..1217Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7223 1062..1217 -
1691683826.0740397-CDS-L-elsbetiae_contig7223:1061..12171691683826.0740397-CDS-L-elsbetiae_contig7223:1061..1217Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7223 1062..1217 -
1622816804.3521774-CDS-L-elsbetiae_contig7223:2052..21641622816804.3521774-CDS-L-elsbetiae_contig7223:2052..2164Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7223 2053..2164 -
1691683826.0853648-CDS-L-elsbetiae_contig7223:2052..21641691683826.0853648-CDS-L-elsbetiae_contig7223:2052..2164Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7223 2053..2164 -
1622816804.362953-CDS-L-elsbetiae_contig7223:2446..26221622816804.362953-CDS-L-elsbetiae_contig7223:2446..2622Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7223 2447..2622 -
1691683826.098464-CDS-L-elsbetiae_contig7223:2446..26221691683826.098464-CDS-L-elsbetiae_contig7223:2446..2622Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7223 2447..2622 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig7223.16076.1

>prot_L-elsbetiae_contig7223.16076.1 ID=prot_L-elsbetiae_contig7223.16076.1|Name=mRNA_L-elsbetiae_contig7223.16076.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=213bp
AVAEAGVLAEVPYSSGVLVALDPTRPTVFKITVGGGQGEQAGGGSGPPTT
VLVLGAIDGRQRDVLALTLRGRRLAALGPELAGAVDDYPEETKAQQAEEN
YLELKAAAAHFAKAYDEDGVSAAEQAGSSTEDEDDDDDDDDDDDDGEQEP
DSGSYYDTSEDDGEETGEESTTDGETGGRGARYSSSNGGGGGGGGGGGAT
TRGYFSSGMVEGA
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mRNA from alignment at L-elsbetiae_contig7223:464..2622-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig7223.16076.1 ID=mRNA_L-elsbetiae_contig7223.16076.1|Name=mRNA_L-elsbetiae_contig7223.16076.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=2159bp|location=Sequence derived from alignment at L-elsbetiae_contig7223:464..2622- (Laminarionema elsbetiae ELsaHSoW15)
GCTGTGGCCGAGGCGGGGGTTTTGGCCGAGGTTCCGTACTCGTCTGGTGT
GCTCGTGGCGCTGGACCCCACACGGCCGACGGTGTTCAAGATCACGGTCG
GGGGGGGGCAGGGAGAGCAGGCTGGCGGCGGAAGCGGCCCCCCTACTACT
GTCTTGGTCTTGGGAGCGATAGACGGGTGAGAGTGGGGACGGAGTTAAGC
AACACGCTCGGTGCGGTTTGCGTTATTGAGTGAGAGTGGTAGATACTGCT
CTGCTACGGTCCCCGTGCGTGATAAGCTACGTACGCGCCGCCTCTTTTGG
AGACAAGAGTACGTAGCGGGGGCGCGGAGAGGGGCGTTGGAGTTTATGAC
TTAAAGAGTGCTGAATATTGCCGCGATTGGCTGTGACCCCCCCCCCCCCC
GCCGCCGCCGCCCTCGCGCGCTTCTCTTTGCCTTGGCCGGTCCCGAAATG
TTCATCAGACGACAACGGGACGTGCTTGCGCTGACGCTGAGAGGGCGCAG
GCTGGCCGCCCTGGGCCCCGAGTTGGCCGGCGCTGTCGACGACTATCCCG
AGGAAACCAAGGCTCAGCAGGCAAGCCAAAGGCAGTATCGATCTCGGCAC
CATTCGTGTCTGTCACTTGCCATCTCTTACATACATATAGGATGTTTTGG
ACTAGAGAGCTAATGTGAGAAACAACAACAACAACAACAACAACAACAAA
CTTGGACAGGCAAAACTCGCTCCTAGACTGCTTTCTCTAGGCACTGAGTG
CACGCTACTGTGCTGCAGGGATAACATACTTTGTGGCGTCTTTTCGGCAC
GCTTGTATGGGCTGACCGGGTGCTGTGAAAGTATCCGACGCCATTGAGAG
AGACTCCTCACCGGCGACTGTAGTAGGTATGGTAGCTCGTAGTGGAGAGG
CTGCGACTAGAACTAGGACCTGCACGTTTCTTTTTTGACACCGTTTTCGT
GCTTTTCTGGACCCTGCCCGAAGGTGGGGTTGTTTGTTTTCGCCCTGGTT
GTTGTTATACTCTCGCGTCATCATGTTTTTTTTTTTGTCTGCCCCGGCAA
GTCCTCTTCACCCCCGCGGACGCGCAGTTCCTCCGCTACACAGCATGTCA
CGTGGGAGTACAACCTATGCTATTATATAGCCCTTGTTTCTTGTTCGGTG
TGAAACCGCTGGTCTAAAAAAAAAAAGGTGCAGGGATGTTTTCTGACACG
TTAAAATTCGCCGTTTTTCATAGATACATCCATGTGTTGCGTTCTCCACG
TAGCATTGCGGTTTCGGTGTGTGGGTTTCGCCCCACTGCACAGGCGGCAG
CATTCTATTTACGGAGTAGATGTTTCTCGTGACCCTCGCCCCCTCTCGGA
ATGCTCAACGCCGTTCGGTCGCTGCGGCTGTTGCACTGCTGTTGCATTGT
TGCAGGCGGAGGAGAACTACCTGGAGCTAAAGGCCGCAGCGGCGCATTTC
GCCAAGGCGTACGACGAGGACGGCGTGAGCGCGGCGGAGCAGGCCGGCAG
CAGCACGGAAGACGAAGACGACGACGATGATGACGACGACGACGACGATG
ATGGAGAGCAGGCGAGAGACAGACTGACGCTGCCGAAGGACCGGTTAGAA
AAGCGGAGACAGTGTGGCTGGCGTGTGTTGCGTGCTGCACACAATCGCGT
GTAAAGGGCGAAGAGGGGGGGGCAGGGCGAGGGCTGTCCACCGTCGTCGT
CGGTCAGAGTCGCTATCGCACACGGTTGTTTGTCAGGAAGAACCGCCTGG
TTGGAGCTGTTGAGGGACTCAAGAGCAGAATGCTGCGTCGGTGGAGGCGT
TGCTCGAAAGTGGCGCAAACGCTTTCGGAAGAGACGAGCGGTGCAACTGC
AACACGGGGTTTCGCGGTTCGCGGACAGACGGGACTAATCCTCCCGCCCC
CCCCCCCTCTCTCTCTCTCGTTGTCTGTGCTTGTGATGGACTATATTTAC
GTACACATGCAGGAGCCAGATTCTGGAAGCTACTACGACACCTCGGAGGA
CGACGGCGAGGAAACGGGGGAGGAGTCCACCACCGACGGAGAAACCGGGG
GAAGAGGTGCGAGATACTCCTCTTCGAACGGCGGTGGCGGCGGCGGTGGC
GGCGGCGGCGGCGCTACCACCCGAGGGTATTTTTCGTCGGGGATGGTCGA
AGGAGCGGG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig7223:464..2622-

>mRNA_L-elsbetiae_contig7223.16076.1 ID=mRNA_L-elsbetiae_contig7223.16076.1|Name=mRNA_L-elsbetiae_contig7223.16076.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1278bp|location=Sequence derived from alignment at L-elsbetiae_contig7223:464..2622- (Laminarionema elsbetiae ELsaHSoW15)
GCTGTGGCCGAGGCGGGGGTTTTGGCCGAGGTTCCGTACTCGTCTGGTGT
GCTCGTGGCGCTGGACCCCACACGGCCGACGGTGTTCAAGATCACGGTCG
GGGGGGGGCAGGGAGAGCAGGCTGGCGGCGGAAGCGGCCCCCCTACTACT
GTCTTGGTCTTGGGAGCGATAGACGGGCTGTGGCCGAGGCGGGGGTTTTG
GCCGAGGTTCCGTACTCGTCTGGTGTGCTCGTGGCGCTGGACCCCACACG
GCCGACGGTGTTCAAGATCACGGTCGGGGGGGGGCAGGGAGAGCAGGCTG
GCGGCGGAAGCGGCCCCCCTACTACTGTCTTGGTCTTGGGAGCGATAGAC
GGACGACAACGGGACGTGCTTGCGCTGACGCTGAGAGGGCGCAGGCTGGC
CGCCCTGGGCCCCGAGTTGGCCGGCGCTGTCGACGACTATCCCGAGGAAA
CCAAGGCTCAGCAGACGACAACGGGACGTGCTTGCGCTGACGCTGAGAGG
GCGCAGGCTGGCCGCCCTGGGCCCCGAGTTGGCCGGCGCTGTCGACGACT
ATCCCGAGGAAACCAAGGCTCAGCAGGCGGAGGAGAACTACCTGGAGCTA
AAGGCCGCAGCGGCGCATTTCGCCAAGGCGTACGACGAGGACGGCGTGAG
CGCGGCGGAGCAGGCCGGCAGCAGCACGGAAGACGAAGACGACGACGATG
ATGACGACGACGACGACGATGATGGAGAGCAGGCGGAGGAGAACTACCTG
GAGCTAAAGGCCGCAGCGGCGCATTTCGCCAAGGCGTACGACGAGGACGG
CGTGAGCGCGGCGGAGCAGGCCGGCAGCAGCACGGAAGACGAAGACGACG
ACGATGATGACGACGACGACGACGATGATGGAGAGCAGGAGCCAGATTCT
GGAAGCTACTACGACACCTCGGAGGACGACGGCGAGGAAACGGGGGAGGA
GTCCACCACCGACGGAGAAACCGGGGGAAGAGGTGCGAGATACTCCTCTT
CGAACGGCGGTGGCGGCGGCGGTGGCGGCGGCGGCGGCGCTACCACCCGA
GGGTATTTTTCGTCGGGGATGGTCGAAGGAGCGGAGCCAGATTCTGGAAG
CTACTACGACACCTCGGAGGACGACGGCGAGGAAACGGGGGAGGAGTCCA
CCACCGACGGAGAAACCGGGGGAAGAGGTGCGAGATACTCCTCTTCGAAC
GGCGGTGGCGGCGGCGGTGGCGGCGGCGGCGGCGCTACCACCCGAGGGTA
TTTTTCGTCGGGGATGGTCGAAGGAGCG
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