mRNA_L-elsbetiae_contig7202.16049.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15
Overview
Homology
BLAST of mRNA_L-elsbetiae_contig7202.16049.1 vs. uniprot
Match: D8LDE8_ECTSI (RNA pseudouridylate synthase domain-containing protein (C-terminal) RNA pseudouridylate synthase dom n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LDE8_ECTSI) HSP 1 Score: 87.0 bits (214), Expect = 2.180e-15 Identity = 60/119 (50.42%), Postives = 64/119 (53.78%), Query Frame = 3 Query: 555 PALNVGLRDIVKV------------------KGRALERPEDHTPELDGAQDY-----ARACHEAR---FDR-----------PVGRLAYNTEGLLLLTNDGDLARLMELSSTGIVRTYS 800 PALNVG RDIVKV +G+ LERPE HTP+L R E R FDR PVGRL YNTEGLLLLTNDGDLAR MEL S+ IVRTYS Sbjct: 149 PALNVGPRDIVKVNVGLFQQPGNGTDCFTFVQGKVLERPESHTPKLWMVHKMRNELVTRHDPEGRPTVFDRLTKLKLPDTLMPVGRLDYNTEGLLLLTNDGDLARKMELPSSNIVRTYS 267
BLAST of mRNA_L-elsbetiae_contig7202.16049.1 vs. uniprot
Match: A0A6H5J790_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J790_9PHAE) HSP 1 Score: 77.0 bits (188), Expect = 4.290e-13 Identity = 33/36 (91.67%), Postives = 35/36 (97.22%), Query Frame = 2 Query: 845 CTIDGVRYKGVFLRVEGGGGKGREGRNAWRTIECTE 952 CTIDGVRYKG+F+RVEGGGGKGREGRNAW TIECTE Sbjct: 5 CTIDGVRYKGMFVRVEGGGGKGREGRNAWLTIECTE 40
BLAST of mRNA_L-elsbetiae_contig7202.16049.1 vs. uniprot
Match: A0A6H5J9J6_9PHAE (S4 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J9J6_9PHAE) HSP 1 Score: 74.7 bits (182), Expect = 1.200e-11 Identity = 48/87 (55.17%), Postives = 51/87 (58.62%), Query Frame = 3 Query: 597 GRALERPEDHTPELDGAQDY-----ARACHEAR---FDR-----------PVGRLAYNTEGLLLLTNDGDLARLMELSSTGIVRTYS 800 G+ LERPE HTP+L R E R FDR PVGRL YNTEGLLLLTNDGDLAR MEL S+ IVRTYS Sbjct: 199 GKVLERPESHTPKLWMVHKMRNELVTRDDPEGRPTVFDRLAKLKLPDTLMPVGRLDYNTEGLLLLTNDGDLARKMELPSSNIVRTYS 285
BLAST of mRNA_L-elsbetiae_contig7202.16049.1 vs. uniprot
Match: A0A7Z0HWP6_9RHOB (Pseudouridine synthase n=1 Tax=Rhabdonatronobacter sediminivivens TaxID=2743469 RepID=A0A7Z0HWP6_9RHOB) HSP 1 Score: 69.7 bits (169), Expect = 5.740e-10 Identity = 58/148 (39.19%), Postives = 71/148 (47.97%), Query Frame = 3 Query: 474 VRHGFPSR----GRVSGGGXXGDGERNTGADPALNVGLRDIVKVKGRALERPED------HTPELDGAQDYARACHEARFDR---------PVGRLAYNTEGLLLLTNDGDLARLMELSSTGIVRTYSRPRVRKHNGREPAGHAPSTE 860 R G SR G ++GG +G+R T PALNV D + V G+ L PE H P+ E FD+ PVGRL N+EGLLLLTNDG+L R +EL STG +R Y RVR + A AP E Sbjct: 19 ARAGVASRRDAEGLITGGRVAVNGKRIT--SPALNVTDSDRITVDGKPLAAPEPARLWMYHKPQGQVTTTRDEKGRETVFDKLPEGLPRLMPVGRLDINSEGLLLLTNDGELKRRLELPSTGWLRKY---RVRVNGRPSEATLAPLIE 161
BLAST of mRNA_L-elsbetiae_contig7202.16049.1 vs. uniprot
Match: A0A7Y0HI03_9PROT (Pseudouridine synthase n=1 Tax=Pacificispira spongiicola TaxID=2729598 RepID=A0A7Y0HI03_9PROT) HSP 1 Score: 66.6 bits (161), Expect = 1.070e-8 Identity = 49/112 (43.75%), Postives = 57/112 (50.89%), Query Frame = 3 Query: 555 PALNVGLRDIVKVKGRALERPEDHTPEL-----------DGAQDYARACHEARFDRP------VGRLAYNTEGLLLLTNDGDLARLMELSSTGIVRTYSRPRVRKHNGREPA 839 PALNVG D V V G+ L PE+ L + RA + R VGRL N+EGLLLLTNDGDLAR +EL +TG VR Y RVR H +PA Sbjct: 60 PALNVGPSDTVTVDGKDL--PEEQAARLWRYHKPAGLVVSARDEKGRATIFEKLPREMPRVVSVGRLDLNSEGLLLLTNDGDLARKLELPATGWVRRY---RVRVHGRVDPA 166
BLAST of mRNA_L-elsbetiae_contig7202.16049.1 vs. uniprot
Match: A0A6G6WY02_9HYPH (Pseudouridine synthase n=2 Tax=Hyphomicrobiales TaxID=356 RepID=A0A6G6WY02_9HYPH) HSP 1 Score: 65.1 bits (157), Expect = 1.970e-8 Identity = 48/116 (41.38%), Postives = 64/116 (55.17%), Query Frame = 3 Query: 549 ADPALNVGLRDIVKVKGRALERPED------HTP--------ELDGAQDYARACHEARFDR--PVGRLAYNTEGLLLLTNDGDLARLMELSSTGIVRTYSRPRVRKHNGREPAGHA 848 + PA+NV D V+V G+ L + E+ H P + +G + A E + R +GRL NTEGLLLLTNDG+LARL+EL +TG VR Y RVR + +PA A Sbjct: 48 SSPAINVKPSDDVRVDGQPLPQKEESRLWRYHKPAGLVTSHKDPEGRRTVFDALRE-QLPRVISIGRLDINTEGLLLLTNDGELARLLELPATGWVRRY---RVRAYGKPDPAALA 159
BLAST of mRNA_L-elsbetiae_contig7202.16049.1 vs. uniprot
Match: UPI000E0DD8FD (pseudouridine synthase n=1 Tax=Alkalilacustris brevis TaxID=2026338 RepID=UPI000E0DD8FD) HSP 1 Score: 65.5 bits (158), Expect = 2.210e-8 Identity = 51/119 (42.86%), Postives = 60/119 (50.42%), Query Frame = 3 Query: 555 PALNVGLRDIVKVKGRALERPED------HTPE--LDGAQDYARACHEARFDR---------PVGRLAYNTEGLLLLTNDGDLARLMELSSTGIVRTYSRPRVRKHNGREPAGHAPSTE 860 PALNVG RD V + G+ L PE H P + A+D FD PVGRL N+EGLLLLTNDG L R +EL STG +R Y RVR + + A AP E Sbjct: 45 PALNVGPRDKVTLDGKPLAAPEPARLWLYHKPTGLVTSARD--EKGRATVFDNLPEGLPRVMPVGRLDINSEGLLLLTNDGALKRALELPSTGWLRRY---RVRVNGTPDEASVAPLRE 158
BLAST of mRNA_L-elsbetiae_contig7202.16049.1 vs. uniprot
Match: UPI0010736928 (rRNA pseudouridine synthase n=1 Tax=Terasakiella sp. SH-1 TaxID=2560057 RepID=UPI0010736928) HSP 1 Score: 65.1 bits (157), Expect = 2.430e-8 Identity = 48/109 (44.04%), Postives = 57/109 (52.29%), Query Frame = 3 Query: 555 PALNVGLRDIVKVKGRALERPEDHTPELDGAQDYARA-----CHEARFDRP---------------VGRLAYNTEGLLLLTNDGDLARLMELSSTGIVRTYSRPRVRKH 821 PALNV +I+ V G+AL P+ P L Y +A H+ RP VGRL YNTEGLLLLTNDG+LAR +E TG+VR Y RVR H Sbjct: 47 PALNVQPNNIIVVDGKAL--PDKQPPRL---WKYHKARGLMTTHKDPEGRPTVFEQLPSGTPRVISVGRLDYNTEGLLLLTNDGELARYLEKPDTGMVRRY---RVRVH 147
BLAST of mRNA_L-elsbetiae_contig7202.16049.1 vs. uniprot
Match: A0A833GDK6_9HYPH (Pseudouridine synthase n=1 Tax=Pseudorhodoplanes sp. TaxID=1934341 RepID=A0A833GDK6_9HYPH) HSP 1 Score: 65.5 bits (158), Expect = 2.480e-8 Identity = 46/106 (43.40%), Postives = 53/106 (50.00%), Query Frame = 3 Query: 549 ADPALNVGLRDIVKVKGRALERPEDHTPELDGAQDYARACHEARFDRP---------------VGRLAYNTEGLLLLTNDGDLARLMELSSTGIVRTYSRPRVRKH 821 A PALNVG RD + V G+ L + E L H RP VGRL NTEGLLLLTNDG LAR++EL +TG +R Y RVR H Sbjct: 43 ASPALNVGARDRISVDGKPLPQRERTRLFLYHKPRRLVTTHADPQKRPTIFAQLPAGLPRLVSVGRLDLNTEGLLLLTNDGGLARVLELPATGWLRRY---RVRAH 145
BLAST of mRNA_L-elsbetiae_contig7202.16049.1 vs. uniprot
Match: UPI001669FB4F (rRNA pseudouridine synthase n=1 Tax=Primorskyibacter flagellatus TaxID=1387277 RepID=UPI001669FB4F) HSP 1 Score: 64.7 bits (156), Expect = 3.670e-8 Identity = 45/96 (46.88%), Postives = 50/96 (52.08%), Query Frame = 3 Query: 555 PALNVGLRDIVKVKGRALERPED------HTP---------ELDGAQDYARACHEARFDRPVGRLAYNTEGLLLLTNDGDLARLMELSSTGIVRTY 797 PALNV RD V+V GRAL+ PE H P E A Y E VGRL N+EGLLLLTNDG L R +EL STG +R Y Sbjct: 52 PALNVTARDRVEVDGRALDAPEPARLWLYHKPPGLVTTSKDEQGRATIYDDLPAEMPRVMSVGRLDLNSEGLLLLTNDGGLKRRLELPSTGWLRKY 147 The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig7202.16049.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_L-elsbetiae_contig7202.16049.1 >prot_L-elsbetiae_contig7202.16049.1 ID=prot_L-elsbetiae_contig7202.16049.1|Name=mRNA_L-elsbetiae_contig7202.16049.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=45bp MKDVFMMRLSRRIARSGMASLREAEYLVEAGVVTVNETPVQTRR*back to top mRNA from alignment at L-elsbetiae_contig7202:2311..5650+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_L-elsbetiae_contig7202.16049.1 ID=mRNA_L-elsbetiae_contig7202.16049.1|Name=mRNA_L-elsbetiae_contig7202.16049.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=3340bp|location=Sequence derived from alignment at L-elsbetiae_contig7202:2311..5650+ (Laminarionema elsbetiae ELsaHSoW15)back to top Coding sequence (CDS) from alignment at L-elsbetiae_contig7202:2311..5650+ >mRNA_L-elsbetiae_contig7202.16049.1 ID=mRNA_L-elsbetiae_contig7202.16049.1|Name=mRNA_L-elsbetiae_contig7202.16049.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=270bp|location=Sequence derived from alignment at L-elsbetiae_contig7202:2311..5650+ (Laminarionema elsbetiae ELsaHSoW15)back to top |