mRNA_L-elsbetiae_contig7182.16021.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig7182.16021.1
Unique NamemRNA_L-elsbetiae_contig7182.16021.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig7182.16021.1 vs. uniprot
Match: D8LQC5_ECTSI (Similar to oral cancer overexpressed 1 n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LQC5_ECTSI)

HSP 1 Score: 239 bits (609), Expect = 5.290e-75
Identity = 125/135 (92.59%), Postives = 127/135 (94.07%), Query Frame = 1 
Query:   46 MFDDIVLLDDRMVAEGKDAGREDGKARGVKEGEGMGRGKGFQAAAEMGFCRGCCLAWLSMHAQDPGTFPFSEKALASMRAVVTLAESVPRVNTQGAAAAQTAQRVRARFRAVTSMVGLPVVFDSKGLAEAKDYSF 450
            MFDDIVLLDDRMVAEGKDAGREDG+ARG KEGEGMGRGKGFQ AAEM FCRGCCLAWLSMHAQDP  FPFSEKALASMRAVVTLAESVPRVNTQ A AAQTAQRVRARFRAVTSMVGLPVVFDSKG AEAKD+SF
Sbjct:    2 MFDDIVLLDDRMVAEGKDAGREDGRARGFKEGEGMGRGKGFQTAAEMSFCRGCCLAWLSMHAQDPDKFPFSEKALASMRAVVTLAESVPRVNTQEATAAQTAQRVRARFRAVTSMVGLPVVFDSKGQAEAKDFSF 136
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BLAST of mRNA_L-elsbetiae_contig7182.16021.1 vs. uniprot
Match: A0A835ZD80_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZD80_9STRA)

HSP 1 Score: 76.6 bits (187), Expect = 1.810e-13
Identity = 47/115 (40.87%), Postives = 64/115 (55.65%), Query Frame = 1 
Query:  130 VKEGEGMGRGKGFQAAAEMGFCRGCCLAWLSM--------HAQDPGTFPFSEKALASMRAVVTLAESVPRVNTQGAAAAQTAQRVRARFRAVTSMVGLPVVFDSKGLAEAKDYSF 450
            + EG  MGR KG + AAEMGF RGCC+AWL++         A  P     S+K +ASM+AV  +A +VPR NT            RA+F+ VT+++   V FD    A A+D +F
Sbjct:    1 MTEGRAMGRQKGHELAAEMGFYRGCCMAWLALLRDNDGVTSALRPELTKASDKLMASMQAVADMAMAVPRENTMDEDLVARVASCRAKFKTVTALLRADVKFDRAADATARDMTF 115
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig7182.16021.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LQC5_ECTSI5.290e-7592.59Similar to oral cancer overexpressed 1 n=2 Tax=Ect... [more]
A0A835ZD80_9STRA1.810e-1340.87Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig7182contigL-elsbetiae_contig7182:5409..7552 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionConserved unknown protein
Ec32 orthologEc-10_005120.1
Exons3
Model size1252
Cds size408
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig7182.16021.1prot_L-elsbetiae_contig7182.16021.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig7182 5454..6753 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816798.8424802-UTR-L-elsbetiae_contig7182:5408..54531622816798.8424802-UTR-L-elsbetiae_contig7182:5408..5453Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig7182 5409..5453 +
1691683821.878261-UTR-L-elsbetiae_contig7182:5408..54531691683821.878261-UTR-L-elsbetiae_contig7182:5408..5453Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig7182 5409..5453 +
1622816798.8880877-UTR-L-elsbetiae_contig7182:6753..75521622816798.8880877-UTR-L-elsbetiae_contig7182:6753..7552Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig7182 6754..7552 +
1691683821.9231045-UTR-L-elsbetiae_contig7182:6753..75521691683821.9231045-UTR-L-elsbetiae_contig7182:6753..7552Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig7182 6754..7552 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816798.8549268-CDS-L-elsbetiae_contig7182:5453..56491622816798.8549268-CDS-L-elsbetiae_contig7182:5453..5649Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7182 5454..5649 +
1691683821.8889236-CDS-L-elsbetiae_contig7182:5453..56491691683821.8889236-CDS-L-elsbetiae_contig7182:5453..5649Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7182 5454..5649 +
1622816798.8663201-CDS-L-elsbetiae_contig7182:6367..65521622816798.8663201-CDS-L-elsbetiae_contig7182:6367..6552Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7182 6368..6552 +
1691683821.8995256-CDS-L-elsbetiae_contig7182:6367..65521691683821.8995256-CDS-L-elsbetiae_contig7182:6367..6552Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7182 6368..6552 +
1622816798.8773673-CDS-L-elsbetiae_contig7182:6726..67531622816798.8773673-CDS-L-elsbetiae_contig7182:6726..6753Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7182 6727..6753 +
1691683821.9103158-CDS-L-elsbetiae_contig7182:6726..67531691683821.9103158-CDS-L-elsbetiae_contig7182:6726..6753Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7182 6727..6753 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig7182.16021.1

>prot_L-elsbetiae_contig7182.16021.1 ID=prot_L-elsbetiae_contig7182.16021.1|Name=mRNA_L-elsbetiae_contig7182.16021.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=136bp
MFDDIVLLDDRMVAEGKDAGREDGKARGVKEGEGMGRGKGFQAAAEMGFC
RGCCLAWLSMHAQDPGTFPFSEKALASMRAVVTLAESVPRVNTQGAAAAQ
TAQRVRARFRAVTSMVGLPVVFDSKGLAEAKDYSF*
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mRNA from alignment at L-elsbetiae_contig7182:5409..7552+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig7182.16021.1 ID=mRNA_L-elsbetiae_contig7182.16021.1|Name=mRNA_L-elsbetiae_contig7182.16021.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=2144bp|location=Sequence derived from alignment at L-elsbetiae_contig7182:5409..7552+ (Laminarionema elsbetiae ELsaHSoW15)
CTTGTGTCACCACGCTTGCTGCTGGAAGCACAGAAAAGTTACAAGATGTT
CGATGATATCGTACTTCTAGATGATAGGATGGTAGCAGAAGGAAAGGACG
CCGGGAGAGAAGACGGGAAGGCGAGAGGGGTCAAGGAGGGCGAGGGCATG
GGCAGGGGCAAAGGCTTTCAGGCCGCCGCAGAGATGGGCTTCTGCAGAGG
GTGCTGCTTGGCATGGCTCTCCATGCATGCCCAAGATCCAGGTAGAGACA
TAAAGCTGCTATGGATGCCGTGCATAGTACGTTGCACACAGCAGTGGCGA
CTCAGAACTCACGACCCGATCAACCAATAAATCACACCTTTGGGGTGAAG
TTTGAATTTTGAATTACTGAAACGGCACGTGGACACGTGGATTCCTGTGA
GCCGGCGGCGGCATGCAGCAGTAGCATGCATGCAGCAGTGTTGTCTCTCA
GCGTTGCGGCACGCTGGTCTCCCCTCGCCTGAATTGAACAACAAAACACC
GTTCATGGCCTGCATTGTATTTTTTGTTTTAAACGCAACCAAGACATACA
TAACTCCAGGCTCGCCTTCGCTCGCGCGCGACTTTCGGAGTCGAGCGGTA
CATACGATTACGATTCCACGCGGAGATGCAGCTCCCCCTCTTCCAGATGG
GGGCGGCCGCGTCCACATTATTTCAGATGCGCGATGCGTGGATTACCGTC
TCCGCACGGTGACAAGGTTGACCACAACATCTTACTGGCAGGCTGGCTTT
TGAGAGATCTTCATCCACCGGTACATAAAAAATAAAAATAAAAACACACA
CACACACCCCTTCACCGCCGTCGTATTGAAAGATCAATATGATAATCAAA
AACGGAACCTAGACTACCCCGCATTTGAGACGGGACCCCGTGGGGTTCGA
CCGGTATTCCATACAATATAGTAACGCAATATTGGTCCGTATTCTTTTAC
GTGGAGCAGGCACGTTTCCTTTCAGCGAAAAGGCACTGGCCTCGATGCGC
GCCGTCGTCACACTAGCCGAGAGTGTCCCACGTGTCAACACCCAGGGGGC
TGCAGCGGCGCAGACGGCTCAGAGGGTCCGCGCGAGATTCAGGGCAGTGA
CCTCCATGGTTGGCCTACCCGTGGTGTTCGACTCCAAAGGACTGGTAAGC
CGAGTCTTTTTAAGTCTTCCACTCCCTCTCTCTCTCCTGCTATACCTATG
TGTCCGAACGAGCAATTGAACGACGAGGTCGTTTATTGGTCGTATCTGCT
TGTTTTTAAGTGAACGTCAATGTTGCGTACCTGCCCCTCCTTCGCTTTGA
ATGCCTGTTCTGTGCCAGGCGGAGGCCAAGGACTACTCTTTTTGAGTCGA
GGTATCGTCTCGTAATCACCCCCAAGGGCTCGGGCTGATGCTCGCATGAA
GAAGGGACTGCAACACCGTCCCCTCTGCATTCATTGGTATTAGAGTCCGC
GGCCTGTTTGTGACACAGGAGAGACCGGTGTGTACAGATAGTTCAAGGCA
CATTTAAGGATGCGCATCGAACTTTGGGCAAGCATAACTTGTATATAGGG
AGCAGCACCGTTGTTTTAGACCCACCGCGCTGAATGAAGTGTTTCTCGCT
TTTGCTGGCTCTCCCCGCAAACATCTCTACCACGCACTGGCCAGCGTTTC
CGATTCGGTTGGCTACATAGCACGTTGAAGTATCAGTGTGTTTGTTTGCG
TGCAAGGCTGCAAAATACACTTGCCAGTGTATCCGATTCGGTTGACTAAC
ACGTACATAGAAGTGTTCAGTGTTTGTAAAATAGCGTGCGCTGCCGAAAA
TTAACTAGAGTGTACCTACCGAGTGGTTGGGTTTGAGTCTGAGGCTATCC
GGTGAGGGGAGGCGGGAAGGGTTGTGAGACACTCGGGGTCATTGGAGCTC
CAGGACTCCGCTGCGCACTTCCGGCGAGACTGCTGTTGTTCGAGAATTCC
TTATGGACCATCCTAGTATTGTAGCGGCGCACGTCGCGCTTACAATTTGG
TGGACCGCAGCCCCACCTGGAATATCTCGTTATTGCAAGGGCAGATGTCA
ATGCCACCTTGAATGGCCAGTTAGAGTGACGTCACCAGACGAGTCAGCCA
AGATCGTATATATTGTCCGGGGTATCACAGATCGAGTCAGCACC
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Coding sequence (CDS) from alignment at L-elsbetiae_contig7182:5409..7552+

>mRNA_L-elsbetiae_contig7182.16021.1 ID=mRNA_L-elsbetiae_contig7182.16021.1|Name=mRNA_L-elsbetiae_contig7182.16021.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=816bp|location=Sequence derived from alignment at L-elsbetiae_contig7182:5409..7552+ (Laminarionema elsbetiae ELsaHSoW15)
ATGTTCGATGATATCGTACTTCTAGATGATAGGATGGTAGCAGAAGGAAA
GGACGCCGGGAGAGAAGACGGGAAGGCGAGAGGGGTCAAGGAGGGCGAGG
GCATGGGCAGGGGCAAAGGCTTTCAGGCCGCCGCAGAGATGGGCTTCTGC
AGAGGGTGCTGCTTGGCATGGCTCTCCATGCATGCCCAAGATCCAGATGT
TCGATGATATCGTACTTCTAGATGATAGGATGGTAGCAGAAGGAAAGGAC
GCCGGGAGAGAAGACGGGAAGGCGAGAGGGGTCAAGGAGGGCGAGGGCAT
GGGCAGGGGCAAAGGCTTTCAGGCCGCCGCAGAGATGGGCTTCTGCAGAG
GGTGCTGCTTGGCATGGCTCTCCATGCATGCCCAAGATCCAGGCACGTTT
CCTTTCAGCGAAAAGGCACTGGCCTCGATGCGCGCCGTCGTCACACTAGC
CGAGAGTGTCCCACGTGTCAACACCCAGGGGGCTGCAGCGGCGCAGACGG
CTCAGAGGGTCCGCGCGAGATTCAGGGCAGTGACCTCCATGGTTGGCCTA
CCCGTGGTGTTCGACTCCAAAGGACTGGCACGTTTCCTTTCAGCGAAAAG
GCACTGGCCTCGATGCGCGCCGTCGTCACACTAGCCGAGAGTGTCCCACG
TGTCAACACCCAGGGGGCTGCAGCGGCGCAGACGGCTCAGAGGGTCCGCG
CGAGATTCAGGGCAGTGACCTCCATGGTTGGCCTACCCGTGGTGTTCGAC
TCCAAAGGACTGGCGGAGGCCAAGGACTACTCTTTTTGAGCGGAGGCCAA
GGACTACTCTTTTTGA
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