prot_L-elsbetiae_contig715.15967.1 (polypeptide) Laminarionema elsbetiae ELsaHSoW15

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_L-elsbetiae_contig715.15967.1
Unique Nameprot_L-elsbetiae_contig715.15967.1
Typepolypeptide
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Sequence length476
Homology
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BLAST of mRNA_L-elsbetiae_contig715.15967.1 vs. uniprot
Match: D8LID6_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LID6_ECTSI)

HSP 1 Score: 466 bits (1199), Expect = 2.310e-158
Identity = 276/468 (58.97%), Postives = 315/468 (67.31%), Query Frame = 0 
Query:   27 MREAREDLAMDRKQKLGRGGDTAPPRLSSSGFRSLATLLRQRVRADELGAAAPPSARSEGSAAHSAVAVKGSYFSADLTEKEKRPRKTRTLLSLCINQIGRDFLSYRADDGALAQAFLLLPPACLSRLSRSASARGTVADHNAGLLCSPGVEALWLRGRFSDEGAGTILPGLLDTAAASQERTCTPKSAADLGEVYRDG------------------------DDGHRRSAGALRKASLHTTVSRTNEAGGVEEEWESANDRIEASLRGGVSLTSLDVSSPRITVEFIKRLVVRIPSLRRLGLRGSLGVVGGPDAVCDFVPRLSGLRELDVSHCMWFCDITLRRLAKTISLGGAPVRTNHSDGEDSPDPQEILPAEPLDG--TSGWGAASAPLTNMVAFRDVAAMETPGAGLR-VSGSSRVGGDKT-SRLSGSPNRFRTFTVVCALTGVTEKGARVAEAMSPGLMVVF 466
            MR+AREDL+ DR+Q LGRGGD APPRLS++GFRSLATLLRQRVRADE+ A APP+ RSE + A   VA   +YFSAD TE   RPRKT TLLSLCI QIGRDFL+YRADD A+A+AFLLLP  CLSRLSRSASA G VADHN GLLCSPGV  LWLRGRF+DEG G +LP L      +  R      AA+L EVYRDG                        DDG       ++ A+ H          G EEEWE+A DRIEASLRGGVSLTSLD+SSPR+T  F+KRL  RIPSLRRLGLRGS GVVGGPD VCD VPRL+ LRELD+SHC WFCD+TLRRLAK++SL  +P   +  +    P        + LD   T GWGAA AP TN +AF   A     G+    VSG+SR  G+K    L  S +RFRTFTVVCA T VTEKGA+ AE MSPGLMV+ 
Sbjct:    1 MRDAREDLSWDRRQNLGRGGDAAPPRLSATGFRSLATLLRQRVRADEIDAVAPPAVRSE-NLAGKVVAAPSNYFSADWTET--RPRKTCTLLSLCIRQIGRDFLAYRADDDAIAEAFLLLPSPCLSRLSRSASAGGNVADHNIGLLCSPGVSTLWLRGRFTDEGVGALLPAL-----NAGNRPNGGSHAAELAEVYRDGTAADCLAGNAVDTAMGTESRVASGDDG---LVALIQPAAYHAAAGEAI-VEGAEEEWETACDRIEASLRGGVSLTSLDLSSPRVTAGFVKRLTARIPSLRRLGLRGSFGVVGGPDFVCDHVPRLAALRELDLSHCTWFCDLTLRRLAKSLSLRASPAAGDPEN--QGPHAGSATYLQDLDEAETRGWGAAFAPSTNNLAFAGHAGSGPSGSDADLVSGASRESGEKELPSLGRSLHRFRTFTVVCARTAVTEKGAKAAELMSPGLMVIL 454
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig715.15967.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LID6_ECTSI2.310e-15858.97Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR032675Leucine-rich repeat domain superfamilyGENE3D3.80.10.10coord: 168..358
e-value: 3.1E-7
score: 31.6
NoneNo IPR availableSUPERFAMILY52047RNI-likecoord: 264..345

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig715contigL-elsbetiae_contig715:1148..4568 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig715.15967.1mRNA_L-elsbetiae_contig715.15967.1Laminarionema elsbetiae ELsaHSoW15mRNAL-elsbetiae_contig715 613..4584 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_L-elsbetiae_contig715.15967.1 ID=prot_L-elsbetiae_contig715.15967.1|Name=mRNA_L-elsbetiae_contig715.15967.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=476bp
MPGRKKGRQKGAAGSKAQSARKWNDAMREAREDLAMDRKQKLGRGGDTAP
PRLSSSGFRSLATLLRQRVRADELGAAAPPSARSEGSAAHSAVAVKGSYF
SADLTEKEKRPRKTRTLLSLCINQIGRDFLSYRADDGALAQAFLLLPPAC
LSRLSRSASARGTVADHNAGLLCSPGVEALWLRGRFSDEGAGTILPGLLD
TAAASQERTCTPKSAADLGEVYRDGDDGHRRSAGALRKASLHTTVSRTNE
AGGVEEEWESANDRIEASLRGGVSLTSLDVSSPRITVEFIKRLVVRIPSL
RRLGLRGSLGVVGGPDAVCDFVPRLSGLRELDVSHCMWFCDITLRRLAKT
ISLGGAPVRTNHSDGEDSPDPQEILPAEPLDGTSGWGAASAPLTNMVAFR
DVAAMETPGAGLRVSGSSRVGGDKTSRLSGSPNRFRTFTVVCALTGVTEK
GARVAEAMSPGLMVVFRDRSLARCA*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR032675LRR_dom_sf