mRNA_L-elsbetiae_contig7137.15952.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig7137.15952.1
Unique NamemRNA_L-elsbetiae_contig7137.15952.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
[Close]
BLAST of mRNA_L-elsbetiae_contig7137.15952.1 vs. uniprot
Match: A0A6H5K447_9PHAE (Protein-serine/threonine kinase n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K447_9PHAE)

HSP 1 Score: 53.5 bits (127), Expect = 1.960e-5
Identity = 23/24 (95.83%), Postives = 23/24 (95.83%), Query Frame = -3 
Query:  172 SYLHLNRLGHNCEELPPLARNSWV 243
            SYLHLNRLGHNCEELPPLARNS V
Sbjct:  481 SYLHLNRLGHNCEELPPLARNSCV 504
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig7137.15952.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5K447_9PHAE1.960e-595.83Protein-serine/threonine kinase n=1 Tax=Ectocarpus... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig7137contigL-elsbetiae_contig7137:9600..10051 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size452
Cds size357
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816792.3992472-CDS-L-elsbetiae_contig7137:9599..99561622816792.3992472-CDS-L-elsbetiae_contig7137:9599..9956Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7137 9600..9956 +
1691683816.978959-CDS-L-elsbetiae_contig7137:9599..99561691683816.978959-CDS-L-elsbetiae_contig7137:9599..9956Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7137 9600..9956 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816792.4138143-UTR-L-elsbetiae_contig7137:9956..100511622816792.4138143-UTR-L-elsbetiae_contig7137:9956..10051Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig7137 9957..10051 +
1691683816.990209-UTR-L-elsbetiae_contig7137:9956..100511691683816.990209-UTR-L-elsbetiae_contig7137:9956..10051Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig7137 9957..10051 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig7137.15952.1prot_L-elsbetiae_contig7137.15952.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig7137 9600..9956 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig7137.15952.1

>prot_L-elsbetiae_contig7137.15952.1 ID=prot_L-elsbetiae_contig7137.15952.1|Name=mRNA_L-elsbetiae_contig7137.15952.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=119bp
RGERPSTTPFPDPTAWPIEVIILRCWLAAACRDVEQAAAAADVTDSRWPQ
TLHVRILDPRVASKRGELLAVVAQPVEVEIAVRHAGARHADRECWVGVGC
GNGEVGGDGGSVFRFAVD*
back to top

mRNA from alignment at L-elsbetiae_contig7137:9600..10051+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig7137.15952.1 ID=mRNA_L-elsbetiae_contig7137.15952.1|Name=mRNA_L-elsbetiae_contig7137.15952.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=452bp|location=Sequence derived from alignment at L-elsbetiae_contig7137:9600..10051+ (Laminarionema elsbetiae ELsaHSoW15)
CGAGGGGAGAGACCTTCCACGACCCCCTTTCCGGACCCCACTGCCTGGCC
TATTGAAGTCATCATACTTCGCTGCTGGCTGGCTGCTGCATGTCGCGACG
TCGAACAGGCAGCAGCAGCAGCAGACGTGACTGATAGTAGGTGGCCGCAG
ACGTTACACGTACGTATTTTAGACCCAAGAGTTGCGAGCAAGAGGGGGGA
GCTCCTCGCAGTTGTGGCCCAGCCGGTTGAGGTGGAGATAGCTGTGAGAC
ACGCGGGGGCGCGCCATGCGGACAGGGAATGTTGGGTTGGGGTGGGGTGC
GGGAATGGGGAGGTGGGGGGGGACGGAGGATCAGTTTTTCGATTCGCGGT
GGACTGACTTGTTGCAGGTACATCGATTGTTAGGCCAATTGCTATAGGAG
CAGATTGGAATCCAGGATTCCAATCCGCTGGCGGCACGCGGATGAAGTGA
TA
back to top

Coding sequence (CDS) from alignment at L-elsbetiae_contig7137:9600..10051+

>mRNA_L-elsbetiae_contig7137.15952.1 ID=mRNA_L-elsbetiae_contig7137.15952.1|Name=mRNA_L-elsbetiae_contig7137.15952.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=714bp|location=Sequence derived from alignment at L-elsbetiae_contig7137:9600..10051+ (Laminarionema elsbetiae ELsaHSoW15)
CGAGGGGAGAGACCTTCCACGACCCCCTTTCCGGACCCCACTGCCTGGCC
TATTGAAGTCATCATACTTCGCTGCTGGCTGGCTGCTGCATGTCGCGACG
TCGAACAGGCAGCAGCAGCAGCAGACGTGACTGATAGTAGGTGGCCGCAG
ACGTTACACGTACGTATTTTAGACCCAAGAGTTGCGAGCAAGAGGGGGGA
GCTCCTCGCAGTTGTGGCCCAGCCGGTTGAGGTGGAGATAGCTGTGAGAC
ACGCGGGGGCGCGCCATGCGGACAGGGAATGTTGGGTTGGGGTGGGGTGC
GGGAATGGGGAGGTGGGGGGGGACGGAGGATCAGTTTTTCGATTCGCGGT
GGACTGACGAGGGGAGAGACCTTCCACGACCCCCTTTCCGGACCCCACTG
CCTGGCCTATTGAAGTCATCATACTTCGCTGCTGGCTGGCTGCTGCATGT
CGCGACGTCGAACAGGCAGCAGCAGCAGCAGACGTGACTGATAGTAGGTG
GCCGCAGACGTTACACGTACGTATTTTAGACCCAAGAGTTGCGAGCAAGA
GGGGGGAGCTCCTCGCAGTTGTGGCCCAGCCGGTTGAGGTGGAGATAGCT
GTGAGACACGCGGGGGCGCGCCATGCGGACAGGGAATGTTGGGTTGGGGT
GGGGTGCGGGAATGGGGAGGTGGGGGGGGACGGAGGATCAGTTTTTCGAT
TCGCGGTGGACTGA
back to top