prot_L-elsbetiae_contig7117.15930.1 (polypeptide) Laminarionema elsbetiae ELsaHSoW15

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_L-elsbetiae_contig7117.15930.1
Unique Nameprot_L-elsbetiae_contig7117.15930.1
Typepolypeptide
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Sequence length747
Homology
BLAST of mRNA_L-elsbetiae_contig7117.15930.1 vs. uniprot
Match: D7FJT5_ECTSI (Splicing factor PWI domain-containing protein / RNA recognition motif (RRM)-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FJT5_ECTSI)

HSP 1 Score: 353 bits (907), Expect = 7.200e-107
Identity = 271/389 (69.67%), Postives = 282/389 (72.49%), Query Frame = 0
Query:   83 RPPPPRLPPNLPALQGMGNPPSGPPDGXXXXXXXXXXXXXXXGAKNGPS-----------LGGPLDGGGGGAGPSINVYVGKLKPEADNSLVQELLMCCGRVEKWNRAVDPSTDLPKAFGFCTYRNAQAAAVSVQLLNDLELAGQAILVKVGKKEQPSLEAFLSPEDKDGDLAKKHQAILDSVKKNIDSILVRYGERSAPDNGS--GGSAKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAGYQPGATRGKSKKDWVRFDGAAMLLSSAGWSDDEDEEKEELITSEIEKFRQKQAERDKKLEDERRQELQRXIXXXXXXXXXXXXXXXXXXXXXXXXXAREMVAMAAMKSRDDKDTAIESK-GGD 457
            RPPPPRLPPNLPALQGMG  P G    XXXXXXX        G KNGP+                       GPSINVYVGKLKPE DNSLVQELL CCGRVEKWNRAVDPSTDLPKAFGFCTY NAQAAA+SVQLLNDLELAGQ ILVKVGKKEQPSLEAFLSP  KD + AKKHQ +LD+VK  IDS+LVRYGERSAP  GS  GG+A                         XX        XXXXX  XXXXXXXXXXXX          KS+KDWVR+DGAAMLLSSAGWS+DEDEEKEELITSEIEKFRQKQAERDKKLEDERRQELQR I XXXXXXXXXXXXXXXXXXXXX   AREMVAMAAMKSRDDKDTA + K GGD
Sbjct:   61 RPPPPRLPPNLPALQGMGKHPGGXXXXXXXXXXXPDKMGMGRGGKNGPNGXXXXXXXXXXXXXXXXXXXXXGGPSINVYVGKLKPETDNSLVQELLTCCGRVEKWNRAVDPSTDLPKAFGFCTYHNAQAAAISVQLLNDLELAGQPILVKVGKKEQPSLEAFLSP--KDEEYAKKHQVLLDTVKAKIDSVLVRYGERSAPGKGSSKGGNANSDGGKSPVSVGASSPSRSGRGSSKXXGKGDGGKGXXXXXYQXXXXXXXXXXXX----------KSRKDWVRYDGAAMLLSSAGWSEDEDEEKEELITSEIEKFRQKQAERDKKLEDERRQELQRKIKXXXXXXXXXXXXXXXXXXXXXDREAREMVAMAAMKSRDDKDTAADQKKGGD 437          
BLAST of mRNA_L-elsbetiae_contig7117.15930.1 vs. uniprot
Match: F0XVP3_AURAN (Expressed protein (Fragment) n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0XVP3_AURAN)

HSP 1 Score: 95.5 bits (236), Expect = 7.460e-17
Identity = 46/89 (51.69%), Postives = 61/89 (68.54%), Query Frame = 0
Query:  147 INVYVGKLKPEADNSLVQELLMCCGRVEKWNRAVDPSTDLPKAFGFCTYRNAQAAAVSVQLLNDLELAGQAILVKVGKKEQPSLEAFLS 235
            +NV+VGKL     +S V+ +L  CG V KW R +D  TD PKAFGFCT+ NA+ A  +V+LLND  L GQ ILVKVG+KEQ  ++  ++
Sbjct:    6 MNVFVGKLPLAVHDSFVEAMLKQCGGVLKWKRTMDSETDRPKAFGFCTFGNAEGAMQAVKLLNDFPLEGQKILVKVGRKEQVIIDEMVA 94          
BLAST of mRNA_L-elsbetiae_contig7117.15930.1 vs. uniprot
Match: A0A7S3JUW1_9STRA (Hypothetical protein n=2 Tax=Aureoumbra lagunensis TaxID=44058 RepID=A0A7S3JUW1_9STRA)

HSP 1 Score: 93.2 bits (230), Expect = 1.880e-16
Identity = 45/87 (51.72%), Postives = 58/87 (66.67%), Query Frame = 0
Query:  147 INVYVGKLKPEADNSLVQELLMCCGRVEKWNRAVDPSTDLPKAFGFCTYRNAQAAAVSVQLLNDLELAGQAILVKVGKKEQPSLEAF 233
            INV+VGKL    ++S ++ LL  CG V KW R +D  T+ PKAFGFCT+ NA  A  +V+ LN   L GQ ILVKVGKKEQ  +++ 
Sbjct:   56 INVFVGKLPLTLNDSFLESLLKICGSVLKWKRTLDAETEKPKAFGFCTFANANGAMRAVRSLNSFSLLGQKILVKVGKKEQALIDSL 142          
BLAST of mRNA_L-elsbetiae_contig7117.15930.1 vs. uniprot
Match: A0A7S3ZNA8_9STRA (Hypothetical protein n=3 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A7S3ZNA8_9STRA)

HSP 1 Score: 86.7 bits (213), Expect = 4.920e-14
Identity = 45/94 (47.87%), Postives = 63/94 (67.02%), Query Frame = 0
Query:  142 GAGPSINVYVGKLKPEADNSLVQELLMCCGRVEKWNRAVDPSTDLPKAFGFCTYRNAQAAAVSVQLLNDLELAGQAILVKVGKKEQPSLEAFLS 235
            GA   +NV+VGKL  +   S V+ LL  CG V KW R+V  + ++PKAFGFCT+ +AQ A  +V+LLN+ +L GQ I VK G+KEQ  L+  ++
Sbjct:  106 GAKAPMNVFVGKLPLDVHESCVEALLKQCGGVLKWKRSVGDN-NVPKAFGFCTFSDAQGALAAVELLNEFDLKGQKIQVKTGQKEQAILDDLIT 198          
BLAST of mRNA_L-elsbetiae_contig7117.15930.1 vs. uniprot
Match: A0A7S3ZN23_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A7S3ZN23_9STRA)

HSP 1 Score: 86.7 bits (213), Expect = 4.920e-14
Identity = 45/94 (47.87%), Postives = 63/94 (67.02%), Query Frame = 0
Query:  142 GAGPSINVYVGKLKPEADNSLVQELLMCCGRVEKWNRAVDPSTDLPKAFGFCTYRNAQAAAVSVQLLNDLELAGQAILVKVGKKEQPSLEAFLS 235
            GA   +NV+VGKL  +   S V+ LL  CG V KW R+V  + ++PKAFGFCT+ +AQ A  +V+LLN+ +L GQ I VK G+KEQ  L+  ++
Sbjct:  106 GAKAPMNVFVGKLPLDVHESCVEALLKQCGGVLKWKRSVGDN-NVPKAFGFCTFSDAQGALAAVELLNEFDLKGQKIQVKTGQKEQAILDDLIT 198          
BLAST of mRNA_L-elsbetiae_contig7117.15930.1 vs. uniprot
Match: A0A835Z4I4_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z4I4_9STRA)

HSP 1 Score: 85.9 bits (211), Expect = 1.710e-13
Identity = 42/89 (47.19%), Postives = 59/89 (66.29%), Query Frame = 0
Query:  147 INVYVGKLKPEADNSLVQELLMCCGRVEKWNRAVDPSTDLPKAFGFCTYRNAQAAAVSVQLLNDLELAGQAILVKVGKKEQPSLEAFLS 235
            + VYVGKL    +   V E+L   GR+ KWNRA D  T+  K FGF TYR A+ A V+V++LN  ++ G+ +LVKVGKKEQ +++ F +
Sbjct:   38 VTVYVGKLADAVEPQYVGEVLRSVGRLAKWNRANDAETNKLKHFGFATYRTAEEADVAVKVLNGQKVMGEELLVKVGKKEQAAIDEFFA 126          
BLAST of mRNA_L-elsbetiae_contig7117.15930.1 vs. uniprot
Match: A0A7S3C5N5_9VIRI (Hypothetical protein (Fragment) n=1 Tax=Prasinoderma singulare TaxID=676789 RepID=A0A7S3C5N5_9VIRI)

HSP 1 Score: 77.0 bits (188), Expect = 3.060e-13
Identity = 37/79 (46.84%), Postives = 52/79 (65.82%), Query Frame = 0
Query:  146 SINVYVGKLKPEADNSLVQELLMCCGRVEKWNRAVDPSTDLPKAFGFCTYRNAQAAAVSVQLLNDLELAGQAILVKVGK 224
            S  +YVGK+ P+A +S++Q+LL  CG V  W    DP+T   K FGF  + NA+A   +V+ LN LE+AG+A+LVK  K
Sbjct:   40 STTLYVGKIAPQAADSIIQKLLALCGVVRAWRPTRDPATGRMKGFGFVDFVNAEACLRAVECLNGLEVAGRALLVKPNK 118          
BLAST of mRNA_L-elsbetiae_contig7117.15930.1 vs. uniprot
Match: I0Z863_COCSC (Uncharacterized protein n=1 Tax=Coccomyxa subellipsoidea (strain C-169) TaxID=574566 RepID=I0Z863_COCSC)

HSP 1 Score: 83.6 bits (205), Expect = 6.270e-13
Identity = 39/100 (39.00%), Postives = 57/100 (57.00%), Query Frame = 0
Query:  146 SINVYVGKLKPEADNSLVQELLMCCGRVEKWNRAVDPSTDLPKAFGFCTYRNAQAAAVSVQLLNDLELAGQAILVKVGKKEQPSLEAFLSPEDKDGDLAK 245
            S  +YVGK+ P  D+S+++ LL  CG ++ W R  DP T  PK FGFC Y  A     ++QLLN L L GQ +L+K     +  +E   + +++D   AK
Sbjct:   36 STTLYVGKIAPTVDDSVIRALLEACGPIKSWKRVQDPETQQPKGFGFCEYEEADGVLKALQLLNKLSLDGQELLLKWNTATEKYIEELQARKERDAAAAK 135          
BLAST of mRNA_L-elsbetiae_contig7117.15930.1 vs. uniprot
Match: A0A087SH96_AUXPR (RNA-binding protein 25 n=1 Tax=Auxenochlorella protothecoides TaxID=3075 RepID=A0A087SH96_AUXPR)

HSP 1 Score: 79.0 bits (193), Expect = 3.940e-12
Identity = 39/109 (35.78%), Postives = 62/109 (56.88%), Query Frame = 0
Query:  130 PSLGGP-------LDGGGGGAGPSINVYVGKLKPEADNSLVQELLMCCGRVEKWNRAVDPSTDLPKAFGFCTYRNAQAAAVSVQLLNDLELAGQAILVKVGKKEQPSLE 231
            P  GGP       +  GGG    S  +YVG++ P  ++S+++ELL  CG V+ W   +DP T   K FGFCTY   +  ++++++LN+L + GQ ++ K  K  Q  L+
Sbjct:    6 PGFGGPPPQYPAGMYPGGGVPMKSTTLYVGRIAPSVEDSVLRELLEACGEVQVWKPTLDPDTSKFKGFGFCTYAEPEGVSIAIRVLNNLNVDGQQLIAKTNKATQEYLD 114          
BLAST of mRNA_L-elsbetiae_contig7117.15930.1 vs. uniprot
Match: A0A1D2A106_AUXPR (RRM domain-containing protein (Fragment) n=1 Tax=Auxenochlorella protothecoides TaxID=3075 RepID=A0A1D2A106_AUXPR)

HSP 1 Score: 78.6 bits (192), Expect = 6.950e-12
Identity = 32/86 (37.21%), Postives = 54/86 (62.79%), Query Frame = 0
Query:  146 SINVYVGKLKPEADNSLVQELLMCCGRVEKWNRAVDPSTDLPKAFGFCTYRNAQAAAVSVQLLNDLELAGQAILVKVGKKEQPSLE 231
            S  +YVG++ P  ++S+++ELL  CG V+ W   +DP T   K FGFCTY   +  ++++++LN+L + GQ ++ K  K  Q  L+
Sbjct:   55 STTLYVGRIAPSVEDSVLRELLEACGEVQVWKPTLDPDTSKFKGFGFCTYAEPEGVSIAIRVLNNLNVDGQQLIAKTNKATQEYLD 140          
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig7117.15930.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FJT5_ECTSI7.200e-10769.67Splicing factor PWI domain-containing protein / RN... [more]
F0XVP3_AURAN7.460e-1751.69Expressed protein (Fragment) n=1 Tax=Aureococcus a... [more]
A0A7S3JUW1_9STRA1.880e-1651.72Hypothetical protein n=2 Tax=Aureoumbra lagunensis... [more]
A0A7S3ZNA8_9STRA4.920e-1447.87Hypothetical protein n=3 Tax=Pelagomonas calceolat... [more]
A0A7S3ZN23_9STRA4.920e-1447.87Hypothetical protein n=1 Tax=Pelagomonas calceolat... [more]
A0A835Z4I4_9STRA1.710e-1347.19Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A7S3C5N5_9VIRI3.060e-1346.84Hypothetical protein (Fragment) n=1 Tax=Prasinoder... [more]
I0Z863_COCSC6.270e-1339.00Uncharacterized protein n=1 Tax=Coccomyxa subellip... [more]
A0A087SH96_AUXPR3.940e-1235.78RNA-binding protein 25 n=1 Tax=Auxenochlorella pro... [more]
A0A1D2A106_AUXPR6.950e-1237.21RRM domain-containing protein (Fragment) n=1 Tax=A... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 385..434
NoneNo IPR availablePANTHERPTHR18806RBM25 PROTEINcoord: 79..444
IPR000504RNA recognition motif domainSMARTSM00360rrm1_1coord: 148..221
e-value: 2.0E-8
score: 44.0
IPR000504RNA recognition motif domainPFAMPF00076RRM_1coord: 149..218
e-value: 2.2E-5
score: 24.2
IPR000504RNA recognition motif domainPROSITEPS50102RRMcoord: 147..225
score: 10.224
IPR012677Nucleotide-binding alpha-beta plait domain superfamilyGENE3D3.30.70.330coord: 199..220
e-value: 3.4E-11
score: 45.3
IPR012677Nucleotide-binding alpha-beta plait domain superfamilyGENE3D3.30.70.330coord: 148..198
e-value: 3.4E-11
score: 45.3
IPR035979RNA-binding domain superfamilySUPERFAMILY54928RNA-binding domain, RBDcoord: 132..229

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig7117contigL-elsbetiae_contig7117:408..8439 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig7117.15930.1mRNA_L-elsbetiae_contig7117.15930.1Laminarionema elsbetiae ELsaHSoW15mRNAL-elsbetiae_contig7117 408..8439 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_L-elsbetiae_contig7117.15930.1 ID=prot_L-elsbetiae_contig7117.15930.1|Name=mRNA_L-elsbetiae_contig7117.15930.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=747bp
MGGPGMQGGPRGGGPGWGMGPGMGPGMGAPNMGGRGMPPGGPGWGGAPGM
GRGPGPGMGMGRGMGMNQAGMGGRGLGPPMMGRPPPPRLPPNLPALQGMG
NPPSGPPDGMGMGPRGGANGMGGGGAKNGPSLGGPLDGGGGGAGPSINVY
VGKLKPEADNSLVQELLMCCGRVEKWNRAVDPSTDLPKAFGFCTYRNAQA
AAVSVQLLNDLELAGQAILVKVGKKEQPSLEAFLSPEDKDGDLAKKHQAI
LDSVKKNIDSILVRYGERSAPDNGSGGSAKSKSRSKDDNGTGASGGKSPV
SAGGDSPSGHGGGGGGDASKGNRGKGDGGGSGSAGYQPGATRGKSKKDWV
RFDGAAMLLSSAGWSDDEDEEKEELITSEIEKFRQKQAERDKKLEDERRQ
ELQRKIKDAQRREKQKEEDAKRREQATRDQEAREMVAMAAMKSRDDKDTA
IESKGGDRDRDGNGNGGNTASSSSAAADKRSGRDQEGRDQDGRDRRRSRS
RSRSRSRSRERERKRGRRDRSPDRDRNRSPDRSRGDRDHRDRRDRDDRDG
DRGGGSRGERERSDRDKNGSGGGGGGGGGGGDCGSAKDREMDAKRAARAK
LAAEETRKRRLAVLSALENAGEDGDDSDGGAKGSGAAGGAGAAAAASGGN
GAAPSAASERQRKEELRRRKAVLAALGDDMLDSDDEEEEEEEVEEEEEEK
PAVVVTAAGGGEAEASTEPPESKVAAVVEKKGKARDKELVGSIPKVR
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR000504RRM_dom
IPR012677Nucleotide-bd_a/b_plait_sf
IPR035979RBD_domain_sf