mRNA_L-elsbetiae_contig7110.15923.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig7110.15923.1
Unique NamemRNA_L-elsbetiae_contig7110.15923.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
BLAST of mRNA_L-elsbetiae_contig7110.15923.1 vs. uniprot
Match: D7FHQ0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FHQ0_ECTSI)

HSP 1 Score: 303 bits (777), Expect = 6.410e-99
Identity = 152/188 (80.85%), Postives = 167/188 (88.83%), Query Frame = 1
Query:  226 MLSQGYAAHTGMTTMQQDANWAAR-PFSHDEHSAFLDAMERYGQESTGSEWEKICQAVGNGRSAQEVRMHAHEYFVSLQMVTQMEPDNRVLGSKVKREDWTFEQDMVFEHAMAEFEETDPLRWLKVASLLPGKNHEDIRYRYQRLLYDVQKIENAMPMEVKYKAPKGGKSLLAKVAAKSTSASGRGRG 786
            M+  GY  H GM  MQ    WA R PF+H+EHSAFLDAMERYGQE+TGSEW+KI QAVGNGR+  EVRMHAHEYFV+LQMVTQMEPD RVLGSK+KR+DWTFEQDMVFEHAMAEFEETD LRWLKVASLLPGK+HED+R+RYQRL+YDV KIENA+PM+VKYKAPKGGKSLLAKVAAKS SAS RGRG
Sbjct:    1 MMPPGYGGHPGMPPMQPGTGWALRKPFTHEEHSAFLDAMERYGQENTGSEWDKISQAVGNGRTVHEVRMHAHEYFVNLQMVTQMEPDARVLGSKIKRDDWTFEQDMVFEHAMAEFEETDSLRWLKVASLLPGKSHEDVRHRYQRLVYDVHKIENAVPMDVKYKAPKGGKSLLAKVAAKSGSASSRGRG 188          
BLAST of mRNA_L-elsbetiae_contig7110.15923.1 vs. uniprot
Match: A0A6H5K4R8_9PHAE (Myb-like domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K4R8_9PHAE)

HSP 1 Score: 224 bits (571), Expect = 1.240e-64
Identity = 122/186 (65.59%), Postives = 133/186 (71.51%), Query Frame = 1
Query:  226 MLSQGYAAHTGMTTMQQDANWAARPFSHDEHSAFLDAMERYGQESTGSEWEKICQAVGNGRSAQEVRMHAHEYFVSLQMVTQMEPDNRVLGSKVKREDWTFEQDMVFEHAMAEFEETDPLRWLKVASLLPGKNHEDIRYRYQRLLYDVQKIENAMPMEVKYKAPKGGKSLLAKVAAKSTSASGRGR 783
            M+  GY  H GM  MQ    WA R                               AVGNGR+  EVRMHAHEYFV+LQM   MEPD RVLGSK+KR+DWTFEQDMVFEHAMAEFEETD LRWLKVASLLPGK+HED+R+RYQRL+YDV KIENA+PM+VKYKAPKGGKSLLAKVAAKS SAS RGR
Sbjct:    1 MMPPGYGGHPGMPPMQPGTGWALR-------------------------------AVGNGRTVHEVRMHAHEYFVNLQM---MEPDARVLGSKIKRDDWTFEQDMVFEHAMAEFEETDSLRWLKVASLLPGKSHEDVRHRYQRLVYDVHKIENAVPMDVKYKAPKGGKSLLAKVAAKSGSASSRGR 152          
BLAST of mRNA_L-elsbetiae_contig7110.15923.1 vs. uniprot
Match: A0A836CHK7_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CHK7_9STRA)

HSP 1 Score: 131 bits (330), Expect = 1.390e-31
Identity = 65/138 (47.10%), Postives = 96/138 (69.57%), Query Frame = 1
Query:  298 PFSHDEHSAFLDAMERYGQESTGSEWEKICQAVGNGRSAQEVRMHAHEYFVSLQMVTQMEPDNRVLGSKVKREDWTFEQDMVFEHAMAEFEETDPLRWLKVASLLPGKNHEDIRYRYQRLLYDVQKIENAMPMEVKYK 711
            PFS +EH+AFL+A+E YG+ +TG EW++I  A+G  R  QEV +HAH+YF+ LQ +   E  +  +       +WTFE++ VFE+ ++ F+E D  RW K+ASLLP K+ ED+R RYQ+L+YDV +IE  M + ++YK
Sbjct:   10 PFSEEEHAAFLEALETYGEGNTGMEWQQITDAIGT-RIPQEVMLHAHQYFLRLQSMANGEDGSMAIDDG----NWTFEEETVFENGLSTFDEDDLERWNKIASLLPEKSPEDVRRRYQKLMYDVTRIEAGMQVSLEYK 142          
BLAST of mRNA_L-elsbetiae_contig7110.15923.1 vs. uniprot
Match: A0A7S2HE62_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2HE62_9STRA)

HSP 1 Score: 99.4 bits (246), Expect = 6.370e-21
Identity = 47/129 (36.43%), Postives = 83/129 (64.34%), Query Frame = 1
Query:  295 RPFSHDEHSAFLDAMERYGQESTGSEWEKICQAVGNGRSAQEVRMHAHEYFVSLQMVTQMEPDNRVLGSKVKREDWTFEQDMVFEHAMAEFEETDPLRWLKVASLLPGKNHEDIRYRYQRLLYDVQKIE 681
            +PF+ +EH +F  ++ +      G EWEKI + +   RS++EV +HA+ Y V+LQ +   +  +  L  ++  + W+ E++++FE ++A F+E DP RW K+ASL P KN +++  RYQ LL+D+ +I+
Sbjct:   10 QPFTSEEHQSFTSSLHKIDGSFEGDEWEKISRTL-ESRSSKEVMIHAYRYLVALQAMVPRDVVHS-LSEELTGDLWSLEEELIFEQSIAVFQEDDPKRWEKIASLFPKKNAQEVELRYQNLLFDINRIQ 136          
BLAST of mRNA_L-elsbetiae_contig7110.15923.1 vs. uniprot
Match: A0A7S4D6G4_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S4D6G4_HETAK)

HSP 1 Score: 90.5 bits (223), Expect = 1.970e-16
Identity = 49/133 (36.84%), Postives = 77/133 (57.89%), Query Frame = 1
Query:  328 LDAMERYG--QESTGSEWEKICQAVGNGRSAQEVRMHAHEYFVSLQMVTQMEPDNRVLGSKVKREDWTFEQDMVFEHAMAEFEETDPLRWLKVASLLPGKNHEDIRYRYQRLLYDVQKIENAMPMEVKYKAPK 720
            ++A+ER    +E+  + W ++ +A+   R+  EV++HAH+YF+ LQ  TQ           +    WT E+D++FEH +A F E D  RW K+  LLP K  + IR RYQ+LL+DV +IE    + + +K  K
Sbjct:    1 MEALERCADNEETKNNMWGELSKALN--RTIHEVQLHAHQYFLRLQAETQGSAPKTSFMGPLDDGTWTKEEDVMFEHGVATFNEGDEERWAKIQKLLPSKTEDQIRKRYQKLLFDVSRIECGHQVVITFKPSK 131          
BLAST of mRNA_L-elsbetiae_contig7110.15923.1 vs. uniprot
Match: K3X5K6_GLOUD (Myb-like domain-containing protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3X5K6_GLOUD)

HSP 1 Score: 83.6 bits (205), Expect = 2.730e-14
Identity = 50/135 (37.04%), Postives = 68/135 (50.37%), Query Frame = 1
Query:  289 AARPFSHDEHSAFLDAMERYGQESTGSE---WEKICQAVGNGRSAQEVRMHAHEYFVSLQMVTQMEPDNRVLGSKVKREDWTFEQDMVFEHAMAEFEETDPLR-WLKVASLLPGKNHEDIRYRYQRLLYDVQKIE 681
            A  P++ DEH  FL  +E YG   T +    W+ I  AV   R   +V+ HA  YF+ LQM    +    V  ++ +   WT E+D  FE  +A          W  +A+ LPGK H D R RYQ+L YDV +IE
Sbjct:   24 ATAPWTEDEHRRFLAGLETYGSGQTANPQAAWQSITAAVRT-RPIHDVKAHARRYFLELQMANTRKRKEDVAATQSQDSRWTLEEDARFEELLAYHSSASVCYPWDAIAAKLPGKTHRDARERYQKLCYDVARIE 157          
BLAST of mRNA_L-elsbetiae_contig7110.15923.1 vs. uniprot
Match: D0N1B4_PHYIT (Myb-like domain-containing protein n=1 Tax=Phytophthora infestans (strain T30-4) TaxID=403677 RepID=D0N1B4_PHYIT)

HSP 1 Score: 81.3 bits (199), Expect = 1.540e-13
Identity = 54/142 (38.03%), Postives = 76/142 (53.52%), Query Frame = 1
Query:  271 QQDANWAARPFSHDEHSAFLDAMERYGQ---ESTGSEWEKICQAVGNGRSAQEVRMHAHEYFVSLQMVTQMEPDNRVLGSKVKREDWTFEQDMVFEHAMAEFEETDPLR-WLKVASLLPGKNHEDIRYRYQRLLYDVQKIEN 684
            Q D  WAA      EH  FL A+E++G     S G  W+ I  AVG   +AQ +  HA  YF  LQ +   +   + L  +V +  WT E+D  FE+ +A +  T     W  +AS LPGK+  D++ R+Q+L YDV +IEN
Sbjct:   19 QHDNPWAAH-----EHQRFLLALEQFGGGQCSSIGQAWQSITTAVGTRDTAQVI-YHARLYFAQLQYLNIQKRQEQQLMQRVDQR-WTQEEDAAFENMLAAYSSTSVCYPWETMASRLPGKSPVDLKERFQKLCYDVARIEN 153          
BLAST of mRNA_L-elsbetiae_contig7110.15923.1 vs. uniprot
Match: A0A662YH76_9STRA (Uncharacterized protein n=1 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662YH76_9STRA)

HSP 1 Score: 82.4 bits (202), Expect = 3.280e-13
Identity = 54/146 (36.99%), Postives = 83/146 (56.85%), Query Frame = 1
Query:  259 MTTMQQDANWAARPFSHDEHSAFLDAMERYGQESTG--SEWEKICQAVGNGRSAQEVRMHAHEYFVSLQMVT-QMEPDNRVLGSKVKREDWTFEQDMVFEHAMAEFEETDPLR-WLKVASLLPGKNHEDIRYRYQRLLYDVQKIEN 684
            +  ++ D+ WAA     DEH  FLDA+E++G ++ G    W  I  AVG+ R   +V  HA  YF  LQ+V  Q   +++++ S  +R  WT E+D  FE  +A +  +     W  +A+ LPGK   D++ RYQ+L YDV +IE+
Sbjct:   12 LEALRDDSPWAA-----DEHRRFLDALEQFGGQAPGVNETWHAIATAVGS-RDVAQVVQHARLYFAHLQLVNAQKRREHQLMASVDQR--WTPEEDAAFEDLLAAYSASSVCYPWDVMAAHLPGKAPMDLKERYQKLCYDVARIES 149          
BLAST of mRNA_L-elsbetiae_contig7110.15923.1 vs. uniprot
Match: W2QQ61_PHYPN (Myb-like domain-containing protein n=11 Tax=Phytophthora TaxID=4783 RepID=W2QQ61_PHYPN)

HSP 1 Score: 81.3 bits (199), Expect = 4.050e-13
Identity = 53/148 (35.81%), Postives = 76/148 (51.35%), Query Frame = 1
Query:  253 TGMTTMQQDANWAARPFSHDEHSAFLDAMERYGQ---ESTGSEWEKICQAVGNGRSAQEVRMHAHEYFVSLQMVTQMEPDNRVLGSKVKREDWTFEQDMVFEHAMAEFEETDPLR-WLKVASLLPGKNHEDIRYRYQRLLYDVQKIEN 684
            T M T     N    P++ DEH  FL A+E++G     S G  W+ I  AVG  R   +V  HA  YF  LQ +   +   R     V +  WT E+D  FE+ +A +  +     W  +AS LPGK+  D++ R+Q+L YD+ +IEN
Sbjct:    8 TNMNTFNLCTNQHDNPWAPDEHQRFLLALEQFGGGQCSSIGEAWQSITTAVGT-RDMAQVIYHARLYFAQLQYLNIQKRQERQFMHSVDQR-WTQEEDAAFENMLAAYSSSSVCYPWEIMASRLPGKSPVDLKERFQKLCYDIARIEN 153          
BLAST of mRNA_L-elsbetiae_contig7110.15923.1 vs. uniprot
Match: A0A833W4S6_PHYIN (Myb-like DNA-binding domain n=1 Tax=Phytophthora infestans TaxID=4787 RepID=A0A833W4S6_PHYIN)

HSP 1 Score: 81.3 bits (199), Expect = 4.050e-13
Identity = 54/142 (38.03%), Postives = 76/142 (53.52%), Query Frame = 1
Query:  271 QQDANWAARPFSHDEHSAFLDAMERYGQ---ESTGSEWEKICQAVGNGRSAQEVRMHAHEYFVSLQMVTQMEPDNRVLGSKVKREDWTFEQDMVFEHAMAEFEETDPLR-WLKVASLLPGKNHEDIRYRYQRLLYDVQKIEN 684
            Q D  WAA      EH  FL A+E++G     S G  W+ I  AVG   +AQ +  HA  YF  LQ +   +   + L  +V +  WT E+D  FE+ +A +  T     W  +AS LPGK+  D++ R+Q+L YDV +IEN
Sbjct:   19 QHDNPWAAH-----EHQRFLLALEQFGGGQCSSIGQAWQSITTAVGTRDTAQVI-YHARLYFAQLQYLNIQKRQEQQLMQRVDQR-WTQEEDAAFENMLAAYSSTSVCYPWETMASRLPGKSPVDLKERFQKLCYDVARIEN 153          
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig7110.15923.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FHQ0_ECTSI6.410e-9980.85Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5K4R8_9PHAE1.240e-6465.59Myb-like domain-containing protein n=1 Tax=Ectocar... [more]
A0A836CHK7_9STRA1.390e-3147.10Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A7S2HE62_9STRA6.370e-2136.43Hypothetical protein n=1 Tax=Dictyocha speculum Ta... [more]
A0A7S4D6G4_HETAK1.970e-1636.84Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
K3X5K6_GLOUD2.730e-1437.04Myb-like domain-containing protein n=1 Tax=Globisp... [more]
D0N1B4_PHYIT1.540e-1338.03Myb-like domain-containing protein n=1 Tax=Phytoph... [more]
A0A662YH76_9STRA3.280e-1336.99Uncharacterized protein n=1 Tax=Nothophytophthora ... [more]
W2QQ61_PHYPN4.050e-1335.81Myb-like domain-containing protein n=11 Tax=Phytop... [more]
A0A833W4S6_PHYIN4.050e-1338.03Myb-like DNA-binding domain n=1 Tax=Phytophthora i... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig7110contigL-elsbetiae_contig7110:3045..8904 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score310.1
Seed ortholog evalue8.6e-82
Seed eggNOG ortholog2880.D7FHQ0
Hectar predicted targeting categoryother localisation
EggNOG free text desc.SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains
EggNOG OGs2E09X@1,2S7QZ@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Ec32 ortholog descriptionSANT/Myb domain transcription factor
Ec32 orthologEc-07_006270.1
Exons8
Model size1285
Cds size672
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig7110.15923.1prot_L-elsbetiae_contig7110.15923.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig7110 3270..8255 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816789.7267675-UTR-L-elsbetiae_contig7110:3044..32691622816789.7267675-UTR-L-elsbetiae_contig7110:3044..3269Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig7110 3045..3269 +
1691683815.010464-UTR-L-elsbetiae_contig7110:3044..32691691683815.010464-UTR-L-elsbetiae_contig7110:3044..3269Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig7110 3045..3269 +
1622816789.8413386-UTR-L-elsbetiae_contig7110:8255..85141622816789.8413386-UTR-L-elsbetiae_contig7110:8255..8514Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig7110 8256..8514 +
1691683815.107227-UTR-L-elsbetiae_contig7110:8255..85141691683815.107227-UTR-L-elsbetiae_contig7110:8255..8514Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig7110 8256..8514 +
1622816789.8551137-UTR-L-elsbetiae_contig7110:8775..89041622816789.8551137-UTR-L-elsbetiae_contig7110:8775..8904Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig7110 8776..8904 +
1691683815.1204264-UTR-L-elsbetiae_contig7110:8775..89041691683815.1204264-UTR-L-elsbetiae_contig7110:8775..8904Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig7110 8776..8904 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816789.7379618-CDS-L-elsbetiae_contig7110:3269..33411622816789.7379618-CDS-L-elsbetiae_contig7110:3269..3341Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7110 3270..3341 +
1691683815.0217564-CDS-L-elsbetiae_contig7110:3269..33411691683815.0217564-CDS-L-elsbetiae_contig7110:3269..3341Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7110 3270..3341 +
1622816789.7505581-CDS-L-elsbetiae_contig7110:4149..42421622816789.7505581-CDS-L-elsbetiae_contig7110:4149..4242Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7110 4150..4242 +
1691683815.0318758-CDS-L-elsbetiae_contig7110:4149..42421691683815.0318758-CDS-L-elsbetiae_contig7110:4149..4242Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7110 4150..4242 +
1622816789.7668042-CDS-L-elsbetiae_contig7110:5391..54721622816789.7668042-CDS-L-elsbetiae_contig7110:5391..5472Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7110 5392..5472 +
1691683815.0428371-CDS-L-elsbetiae_contig7110:5391..54721691683815.0428371-CDS-L-elsbetiae_contig7110:5391..5472Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7110 5392..5472 +
1622816789.781931-CDS-L-elsbetiae_contig7110:6123..62281622816789.781931-CDS-L-elsbetiae_contig7110:6123..6228Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7110 6124..6228 +
1691683815.0562675-CDS-L-elsbetiae_contig7110:6123..62281691683815.0562675-CDS-L-elsbetiae_contig7110:6123..6228Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7110 6124..6228 +
1622816789.7951205-CDS-L-elsbetiae_contig7110:6551..66681622816789.7951205-CDS-L-elsbetiae_contig7110:6551..6668Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7110 6552..6668 +
1691683815.0665524-CDS-L-elsbetiae_contig7110:6551..66681691683815.0665524-CDS-L-elsbetiae_contig7110:6551..6668Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7110 6552..6668 +
1622816789.8073514-CDS-L-elsbetiae_contig7110:7331..75011622816789.8073514-CDS-L-elsbetiae_contig7110:7331..7501Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7110 7332..7501 +
1691683815.077715-CDS-L-elsbetiae_contig7110:7331..75011691683815.077715-CDS-L-elsbetiae_contig7110:7331..7501Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7110 7332..7501 +
1622816789.8248456-CDS-L-elsbetiae_contig7110:8221..82551622816789.8248456-CDS-L-elsbetiae_contig7110:8221..8255Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7110 8222..8255 +
1691683815.0882692-CDS-L-elsbetiae_contig7110:8221..82551691683815.0882692-CDS-L-elsbetiae_contig7110:8221..8255Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7110 8222..8255 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig7110.15923.1

>prot_L-elsbetiae_contig7110.15923.1 ID=prot_L-elsbetiae_contig7110.15923.1|Name=mRNA_L-elsbetiae_contig7110.15923.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=224bp
MLSQGYAAHTGMTTMQQDANWAARPFSHDEHSAFLDAMERYGQESTGSEW
EKICQAVGNGRSAQEVRMHAHEYFVSLQMVTQMEPDNRVLGSKVKREDWT
FEQDMVFEHAMAEFEETDPLRWLKVASLLPGKNHEDIRYRYQRLLYDVQK
IENAMPMEVKYKAPKGGKSLLAKVAAKSTSASGRGRGGVGGASRGGGLRC
ARWWGRCWRRGRRQAEGAQQEQD*
back to top

mRNA from alignment at L-elsbetiae_contig7110:3045..8904+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig7110.15923.1 ID=mRNA_L-elsbetiae_contig7110.15923.1|Name=mRNA_L-elsbetiae_contig7110.15923.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=5860bp|location=Sequence derived from alignment at L-elsbetiae_contig7110:3045..8904+ (Laminarionema elsbetiae ELsaHSoW15)
GAGGAACCGACCCAGCACAAATACACGGACGCACTTCCGATTGAGGCGGA GCTATCCTTCTTGGCCTCTAAGCGTTGGGGCCTTGATCAACTTCCCGCTG TAGGAACTGTGCCTTGTGATAAGACTACGCCTCAAGGAGAGCCGAAATCG ACGACGCGCGCAGAAACAAGACGAAACGCTCGCTGGCTTCGAGGGCACAC ACACGAGGAGAGCGCGAAGTTGCAGATGCTTTCCCAAGGATATGCGGCGC ACACAGGCATGACGACGATGCAACAGGACGCTAACTGGGCTGCCAGGGTG AGTTCATTGGTAGATTGGTCTCCACGTGTTACGCGAGATGCCCTCTTGAA CACACTCCGAACTGCTCCTCGAGGGTCGTCGAATCCTCAAAGGGTGTTCG TGCCGTAGCCGAAGGCCATATCGAGACCTCATGTTTGAGTTTTGTATCGT AAACAAATCGCTCTCCGGGCCCGTGTACACCCTATACAAACTCCTCTGCC ACCAATCCAGCAAGACACGCGCCCTCTTTGGTCCCGATACGATTTCGCAA TTGCCGCGCTACCAAAGCACACGATAAAAAAAATAAAAAACCACGAGACG CAGACGAGGCTTGGTTTGAAACCGCCTGTTACTCGCGACACACCCGCTCC GAGAGGCGCGATGATCCCCCATGGCAGCGACGAGGGACGAGGGAAGCCGA TAGGGATCAGCCAATAGGACGCCTGTGGGCGTAGAGTTTTGCTGCAGGCC CTCTTTGGCTAGCTCGTCGCTCTCCTGTGGGTATCTATCTAGACTTGCCC ACTCTCCTGGCTGCCTTCCCCGTGAGAGTGAAGCACAGCAGCGCAGCAGC CCCCCCCCCCCCCGGCGGCATCCCCTTTTGTGGGCGTCGGCCGACAGACC ACAAAACCCATGTTTTGNNNNNNNNNNGGGTTTTTCTTTGGACTGGCCCC CTCCCCTGGCCGCCCTCCCCGGGGGGGGGAAGCACAGCAGCGCAGCAGCC CCCCCCCCCCCCCCGGCGGCATCGAGTTGTGTCGTCGTCGGCAGACATAC ATAAAAACCCTTGTTGTCGGCGTGTGCTCTCGCCGTCTCGGTCCCTGCAC TGCAGCCCTTCAGCCACGACGAACACTCTGCGTTCCTTGATGCCATGGAG CGGTACGGGCAGGAGAGCACTGGGAGCGAATGGGAGAAGATTTGCCAGGT CAGTGCGTGTGCGCGTGTGCGGGTGTGGGTAATACTGCGTAGTATCGTGC GTAGGTGGGCGACACGAGATAGCACCAGCACACCAAAACAAACTCTACAC AATAGACTAATGCCACACCGCCGTGTGATGTTTTTCCGGGGGCACAAAAT AGATCAAGTTTTAGGGATGACAGACGAGATAGCACACACCCTTAGAGCAA GCACCTCAAACATCCCGCGGTGATATGTAGTGTTAAAACTCCAAAATCGT TTCATCGCCGGGGTGTACTATCGTGTCGCCCGTGGTATGCAGCTTTGCCG TCCTCATTTGCACGATTGCTAGGTAGTGTGTGCCCTGTGTCCTCCATCAT GATGTGTACAATACAGGAAGTGCGCTGGCTGCTTGCTCTCCCACGCTTCT GTAGTCGAAAGGAAACAGGACTGGCGATCGTTTCGCTCCATCCGCCAAAG CTGCAGATAAACATCAGGGCGGAGTATAGACGAGCCGGGTGGTGGTGCGT GTTTCACGTGGCGTGTCCGTTGCGCCTGCTGCCTTTACCGCCGTGTACTT CTGTACCACGCAAGATAACACCCCCACATGACACCCCCACAAAGGACAAC ACACACCCTCAACAATACACCACCCGGTAGTAACATTTCCAAACACGAAA ACGTTGTCACCGGTGGGGCGTGTTATCTTGTGTGGTTTACGGTGCATACC ATCGTATACATATATCGGAATATGGATGTAGCTAGACATGAAATTATGCG TGGTGCAGGGGGGGGAGGCGGTTGAATGCGTATGGCCCCTAAACCTCTTC CGGCAGGCACGATACCGATGTTGATGTTGAGGCAGCGATACGCAGCACAC TTACACAGAGTTTGTGTCAGCTCTTTCTTTCCTTGAGCTCATAATTGTGC CTACTTTTGCTGAGAGAAAAGAGGGTAGGAAGCCCGGATCTCTCATGGTT GATAACATGCAGCAGTAGTATGACTGCTGTTGTATAGTAGTGGAACATCG GTAAATGCGTGGGTTATCAAGAAAATATACAAATAAATGTGTCAGATGTT TGCTTCGGGGGCGGGGCGGGGCGTGTAGATACTCGACATACCAGCCACCG AGGTGTATTTCTCACGGTCTCTGTTGCTTAATTTGTCGGGACAACAGGCT GTCGGCAACGGGAGATCTGCCCAGGAGGTTCGGATGCACGCCCACGAGTA CTTCGTCAGCCTACAGATGGTCACCCAGGTAAAGGGGTACATGCGTGAAT TTCGTGAACGTTGATTTGAGTGTTGGGGGTGTTGGGGGTGTAGTCGTGGC TGCAGCAGTGACTGAGCTGAACCCGATGTCCCCGGCTCGGCCGCGCGCCG CCGGGGACCCAAAATGTATAACAAGTATTATTTCCTAGCTATGTAGCGTA CAGCAGCAGTGGCGTGTAGTGGCGTGCAACACGATTTTTAGAGCAAGCAT GTTTAACGAGTGGCGTTTGTCCTTGGCCTCCTCCTCTTACTCGAGCAGCC GCAGGAAAACGTCTTCGGTGGGCGATCTTGTGATTTTTGCTTGTTTGCAT CGAACAACGGGGGTGACCTGTAACCTGCTAGAAACAGGGGACCTCTCGTA GATTTGTATTCTGGCGAGAAAAAGTAGGCCATCACCAAGATGTTAATGGC ATACCTAGGCGTCGTCCACCCGTACGTACGTGCATACGCACATCTAGAGG GGCGCATGGCCACCACGTGACGAGCAATATCACGCTTGCAGTTATTGCGG CATTATCGACTCACCAGCGTTAGTTTGGTACATATCTTGTCTTGATCTCT CTCTCTCTCTCTCTCTCTCTCTCTCTCTCTGTGTGTGTGTGTGTGTGTAC CTTCGCTGTTCATGGTGTGTTCCCTTTAGATGGAGCCCGACAATCGCGTG TTGGGGAGCAAGGTTAAGCGGGAGGACTGGACGTTCGAGCAAGACATGGT GTTTGAGCACGCCATGGCTGAGTTCGAAGAAACGGTAAGATATGTAGCCA GTTTCACTTCGGGGGCGGGGGCGGGATTGAGTTGTCCACGCATCCCGTGG TGGATGAATGATGTGATGGCCGATGATGTGATGGATCAATGGTGTGACAG ATCAATGGTGCGATGGATCGATTATGTTATGGTCGATGATGTGGTAGATC AATGATGCGATGATCGGTGATGCGATGGATCAATGTGGCGATCAATGGTA TGACAGATCAACCACTGGTTGACAGATTAACGATGTGATGATCAAATGAT GTGGTGGACCAATGATGTGATGGATCAATGATGTGATGATCGACGCTGGA CGAACAGGACCCCCTGAGGTGGTTAAAGGTCGCCTCGCTGCTGCCGGGCA AGAATCACGAGGACATCAGGTATCGATACCAGCGCCTCCTCTACGACGTC CAAAAGATCGAGAACGCCATGCCGGTATGAACTTTCGATGGTACTTTTGC TGGTGTCTTTTGAATTTTTGTTGTTCGTCACTTTTCAGGTGTACGGCCGG CGCTGACTTGAGTGGCGGCGGATTTGTGTGAATAAATGTATGGACTTCGT TTTATGTCATTTGACGCTGTCGGTGTTGGAGTTGTTTGGTGTCCGTGCTT CTTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGGATATACTCCTGCTGG ATATACTCCTGCTGGATATACTCCTGCTGTCGTTGCTGTAGTCGGTGCCG CTGCCGCTGCCGCTGCCGCTGCCGCCGCCGCCGCCGTTGCTTTCCTAAGT CGTGGCTGTTGCTGGCGAGGTTCTCATGGCTGCCCCTCGAGACCGGCGAC GCCGTACTCACGTCGGCGGTTTTTTTCTCGCGGTCCTTGCTCTCGATCTT GTCGCTTTCCCGGTGTCCTGATGGCCGGTGAACGTGGCGATCGAGGGAAG GAGGCGTTGCCCGCATGCATGCTTTGCTTTCAATCCGGGCGCTCAGCTCT GGCTGCGGGCAGCTCGTGCCTTCGCACTTCTCAAAGCCACCTTCTCATTT CTGATCTGACGCCTTTACTCCCAATCGGCCCCCCACCAACTCTTGTTCCC CGTTTCTCGCCCACTCGACGCGCACGGCTCGGATCAGATGGAGGTTAAGT ACAAAGCCCCGAAGGGTGGGAAGTCGCTCCTCGCCAAGGTAGCAGCCAAG AGCACCTCCGCCTCCGGCAGGGGTAGAGGGGGGGTCGGCGGGGCCAGCAG GGGGGGGGGGTTACGCTGTGCACGGTGGTGGGGGCGATGCTGGCGGCGGG GAAGAAGGTGGGGGCTTCGTCAAGAACGCCTCTCGGCCGAGGGCGGTGGG GAAAGGGAGGGGCGGCGCTAGGCTCGAAGGCGGGGAGAGAGAAGGTGGGC ACTCTTTGTTTCTAGGCACGAAGCATTTTCGGGTGTGTCTACTGTACGTT TGTGTGGGTGGTGGCTGGCAACAAGCGTCGCCTTGCCGAGGAGATAGGGC GGGGGCACCGTGAGTTAATTTTACACCCCCCCTCCTTGTGTGCCGCCTTA AGGTGAGGTAAATAAAAGTATCCAACCCCCCCCCCCCCTCCCCGCAGGGG TCTGACTACCTCCCGCGTCTTCTCCCAGTGTCAAAAGCGCTTCCCTCTCG GCTAGGTGTAGATTTGACGCGTATTTTTTCCCGAGGGAAAAAAGAGGATG TCTCGTTCCATGGTGCAAGAGTCGTAAAGCTATGTTGCATGTGGGTGAGC ATCACATGTTTTTCTTGGACCGTCAACGTTTGTAGAAAGCCTTTGGTGTG CAACTCCGCGGCCTTTGCGCTTCATCGCCTAGTCCCTTGCCGGGTAAAAA GGCCCCTGTCTCTTTTCCCCTACATGCTCGCGCTCCCTGTCCTCTTCTTC CCCGTCTCCCATTTTTTTCGTGTGTCGGGCGTGTGCCTGCCTCTGTATCG GTTCGTTTTCGTTTTCGATTTCTCGTGTTCAATGTTTTTGCTGCTCCCGT CTCGGGCCCGCCGTGAAACTTAAGCAGGCAAGCCGAAGGGGCCCAACAAG AACAAGATTAAGGGGAAAGGGGGTGGCTACCTCCTGAACAACAAGTCCTC CTCTCCAAGAGGGTCGTCGAGGGCGGGAAGCAGCTTCTCCCGGTCCCAGG TGGGAAAGGGGGGCGCCGCCGCCGCCGCCGCCGCCTCTGCGGGCGCCGGC GGCGCAGCCGCCTCGGCCGCGGCAAGCGGCGGCGCCGTGGGCGGACCGTA CTCAGCAGCGGCGGCAGCAGCAGCAGCAGCAACACCACCATTAGCAGGCG GGGGAGGAGGAGCAGGAGCAGTGAGGGCGCTCCGCGGACTGGCGGGAGCG GGGAGAAGTGGCGGCGGCGGCGGTGGCGGCGACGCGAACGCGCCAAGAGG TGATGGCAGCGGCACGCCATCGTCGTCGTTGGCCGACGGGGAGTCAACCG ACACCGAGGACAACGGCGGCGGCGGCGGTGGCGGCGGCGACGTTTACAGC CCTCCCCGCGCAGGACCTGGTCCCGGTCGCGGCGGCAAAGCACTCTCGGG TCGCGGGAAAGGGCTCTCCGGGCGCGGGAAGGGGCTCACTGGGCGTGGGA AGGGGCTCGCTGGGCGTGGCAGAGGAGGGGGCGCCGTGGGCGGCGGAGGC AGGGGAGGTGGGGCTTCGGGCCGCGGCGGCGGCAGTGGAGGAGGGGCAGG GGGGAAGGCC
back to top

Coding sequence (CDS) from alignment at L-elsbetiae_contig7110:3045..8904+

>mRNA_L-elsbetiae_contig7110.15923.1 ID=mRNA_L-elsbetiae_contig7110.15923.1|Name=mRNA_L-elsbetiae_contig7110.15923.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1344bp|location=Sequence derived from alignment at L-elsbetiae_contig7110:3045..8904+ (Laminarionema elsbetiae ELsaHSoW15)
ATGCTTTCCCAAGGATATGCGGCGCACACAGGCATGACGACGATGCAACA
GGACGCTAACTGGGCTGCCAGGATGCTTTCCCAAGGATATGCGGCGCACA
CAGGCATGACGACGATGCAACAGGACGCTAACTGGGCTGCCAGGCCCTTC
AGCCACGACGAACACTCTGCGTTCCTTGATGCCATGGAGCGGTACGGGCA
GGAGAGCACTGGGAGCGAATGGGAGAAGATTTGCCAGCCCTTCAGCCACG
ACGAACACTCTGCGTTCCTTGATGCCATGGAGCGGTACGGGCAGGAGAGC
ACTGGGAGCGAATGGGAGAAGATTTGCCAGGCTGTCGGCAACGGGAGATC
TGCCCAGGAGGTTCGGATGCACGCCCACGAGTACTTCGTCAGCCTACAGA
TGGTCACCCAGGCTGTCGGCAACGGGAGATCTGCCCAGGAGGTTCGGATG
CACGCCCACGAGTACTTCGTCAGCCTACAGATGGTCACCCAGATGGAGCC
CGACAATCGCGTGTTGGGGAGCAAGGTTAAGCGGGAGGACTGGACGTTCG
AGCAAGACATGGTGTTTGAGCACGCCATGGCTGAGTTCGAAGAAACGATG
GAGCCCGACAATCGCGTGTTGGGGAGCAAGGTTAAGCGGGAGGACTGGAC
GTTCGAGCAAGACATGGTGTTTGAGCACGCCATGGCTGAGTTCGAAGAAA
CGGACCCCCTGAGGTGGTTAAAGGTCGCCTCGCTGCTGCCGGGCAAGAAT
CACGAGGACATCAGGTATCGATACCAGCGCCTCCTCTACGACGTCCAAAA
GATCGAGAACGCCATGCCGGACCCCCTGAGGTGGTTAAAGGTCGCCTCGC
TGCTGCCGGGCAAGAATCACGAGGACATCAGGTATCGATACCAGCGCCTC
CTCTACGACGTCCAAAAGATCGAGAACGCCATGCCGATGGAGGTTAAGTA
CAAAGCCCCGAAGGGTGGGAAGTCGCTCCTCGCCAAGGTAGCAGCCAAGA
GCACCTCCGCCTCCGGCAGGGGTAGAGGGGGGGTCGGCGGGGCCAGCAGG
GGGGGGGGGTTACGCTGTGCACGGTGGTGGGGGCGATGCTGGCGGCGGGG
AAGAAGATGGAGGTTAAGTACAAAGCCCCGAAGGGTGGGAAGTCGCTCCT
CGCCAAGGTAGCAGCCAAGAGCACCTCCGCCTCCGGCAGGGGTAGAGGGG
GGGTCGGCGGGGCCAGCAGGGGGGGGGGGTTACGCTGTGCACGGTGGTGG
GGGCGATGCTGGCGGCGGGGAAGAAGGCAAGCCGAAGGGGCCCAACAAGA
ACAAGATTAAGCAAGCCGAAGGGGCCCAACAAGAACAAGATTAA
back to top