mRNA_L-elsbetiae_contig711.15922.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15
Overview
Homology
BLAST of mRNA_L-elsbetiae_contig711.15922.1 vs. uniprot
Match: D7FYW1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FYW1_ECTSI) HSP 1 Score: 482 bits (1240), Expect = 1.990e-153 Identity = 362/769 (47.07%), Postives = 437/769 (56.83%), Query Frame = 1 Query: 787 MAVLAEATDEAREEAHSALDTVEGFAKLNRKLVDELRAAVSARDDLVEELSNERGLREQLEEDVGELLESVFVTELAHKQEELEAS-------AGLVVAAHARMEEEYRVTLSSADGERDRLEETVASLEVQLADERRAQGTRAKEEAERAAMGSEEVLSVRARLHPRAKRGGHARVNLRQSGRNFVASGGNGGNSG-SGWLGAAQARTEGQQNGSSRAPSQH--KNHNSHGGGSEPHTKRSSPQHQPRVST-PVTAVARRSTGKVSSSGPVGGGDL---SIGNGGTHSGDGSVGHAVHMAAVESVEAFLGDFVPAV--QPPAVARLSSAS---TGAGAEEKGAGGAGQTGGAVVKAASKWAAIGRGGKISARATAVCIVEATKAAEIAAVGQLRSLTSASARVLSASWFSLVSRATSGGAAHGDH---GPGGSGNEHTG-----DGAEGVASPDSTVPVIAVRRLIQACGMLQGTAGGPTLAHADMELQRNAVGKGGRSIGHREYFKVITALSQCRFAGEPKDEALEKLSRMLRLMQA-GPGAAPHSQKRQVQNHAATPAAKPAAGNAETTSSAKANAAPPGGTGVEEGLTGAERVLERDRRALEAIFSHYSASSLLPFATLASFCKDFELIPGLLSREDAHRIYVQLAYPSENSLTPKLLAAREGPQRQRVAAATRNGGR---GDGAADSAGFGLTLGQWITWLGLAAAGCTWFDKQRGLYNTPTKKVLGLLQWMEGSVGKKRIGSKRGAAVVPAFNLLPLRAHPAQ 3000 MAV+A+AT++AREEA SALDTVE FA LNRKLVDELR V ARD+L+ +L NERG+REQLE D+ ELL S V E ++E+L+A + V HARMEEEYR+ L S+ ER RL+ETV+SLE L +RR A+E +ERA MGSEE+ S+RA R ++ G+ R +R S GG+GG SGWL Q R + Q+ G+ R +H K GG H S + + P T A+R + +S G SIG + G AVH AAVE+VE FLGDFVP V QP A + L SAS +G+GAE K GG G AVVK SKWAAIGRGGKISARA AVC+ EA KAA+ + +LRS+ +A+AR LSASWFSL++ ATS A HG H G GG E T A+ AS D+TVP IAVRRL+Q+CG+L+ GGPTLAHADMELQRN +GGRS+GHREYFK+I ALSQ RF G+ KD ALE+LSRMLR +Q P PH+Q RQ G G + +LL + A F GL S +L ARE P +R AAA R G+G +A GL L QW+ WLGL A GC+WFDKQRGLYNTPTKKVLGLLQWMEGSVGKKRI +KRG A VPAFNLLPL+ Q Sbjct: 1 MAVIADATEKAREEAQSALDTVEAFAALNRKLVDELRTTVCARDELLGDLRNERGIREQLEHDIEELLGSGLVAEFKLREEDLKAQCKREQGESARVAKVHARMEEEYRIALDSSGRERARLQETVSSLEETLLSDRREHAISAREFSERATMGSEEMRSLRAGFLTRPRQRGYDRHTVRPSAAKLSGQGGSGGQGDVSGWLFDVQQRMDAQKVGAGRGVVRHPTKKTAPDGGRGVGHQNTGSDGNLSSAAVVPPTGGAKRQFTQPTSCGGXXXXXXDGSSIGXXXXXXXXXNAGQAVHAAAVENVELFLGDFVPEVRAQPQAASALLSASANASGSGAEGK-VGGEEHDGSAVVKKGSKWAAIGRGGKISARAAAVCLEEANKAAQAETLHRLRSMINAAARTLSASWFSLLATATSAAATHGGHVGHGTGGGRGEGTAVENINSAADRPASTDATVPAIAVRRLVQSCGILRNAGGGPTLAHADMELQRNTASRGGRSVGHREYFKIIMALSQYRFVGDAKDHALEQLSRMLRPVQRDSPRTPPHAQGRQA------------------------------GVGSD-------------------------VPALLDLWSAALF--------GLGS----------------------VLQAREEPPGRRSAAAPATAARNQFGEGGVVAAA-GLGLDQWMAWLGLVAVGCSWFDKQRGLYNTPTKKVLGLLQWMEGSVGKKRISAKRGGAFVPAFNLLPLKVDHRQ 682 The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig711.15922.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 1
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_L-elsbetiae_contig711.15922.1 >prot_L-elsbetiae_contig711.15922.1 ID=prot_L-elsbetiae_contig711.15922.1|Name=mRNA_L-elsbetiae_contig711.15922.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=868bp MSTADEAKKLRTSLKRLQEEAARERERREMCEEQARLAYVSLEAESKRAFback to top mRNA from alignment at L-elsbetiae_contig711:23964..33172- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_L-elsbetiae_contig711.15922.1 ID=mRNA_L-elsbetiae_contig711.15922.1|Name=mRNA_L-elsbetiae_contig711.15922.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=9209bp|location=Sequence derived from alignment at L-elsbetiae_contig711:23964..33172- (Laminarionema elsbetiae ELsaHSoW15)back to top Coding sequence (CDS) from alignment at L-elsbetiae_contig711:23964..33172- >mRNA_L-elsbetiae_contig711.15922.1 ID=mRNA_L-elsbetiae_contig711.15922.1|Name=mRNA_L-elsbetiae_contig711.15922.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=5208bp|location=Sequence derived from alignment at L-elsbetiae_contig711:23964..33172- (Laminarionema elsbetiae ELsaHSoW15)back to top |