mRNA_L-elsbetiae_contig7101.15912.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig7101.15912.1
Unique NamemRNA_L-elsbetiae_contig7101.15912.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig7101.15912.1 vs. uniprot
Match: A0A6H5JH46_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JH46_9PHAE)

HSP 1 Score: 154 bits (390), Expect = 4.780e-40
Identity = 91/205 (44.39%), Postives = 117/205 (57.07%), Query Frame = 1 
Query:    4 KEAQHTLPDIERCVIRVVVDGVVASTLPVDQAFSAAAVQDNSDNGLVVDINTLFVPAYEKRKRCAEHPAKAATAAVTGGGGWVGDEDAWRLESRAIDKICTRELFGAHYIHGELACRRALSGRDDIEQDSSEA-------EAGREESAPPPRAATQPPPTPDLES--KGPGWGVLATTGTVEYFHTGNLVDPLSALPWKATAKEE 591
            K  +  L D +RCVIR VVDG  +ST+P+D A        N+D    V + T  +P Y++  RC+EHPAKA+     G   W  +ED WR+++RA+D++CTRE FGAH+IHGELACRR   G     Q  +E        E  R  SAP PR          LES  + P W VLAT+  VEYFHTG+L D LS+ PW A +  E
Sbjct:  380 KGMEPPLSDYDRCVIRAVVDGSTSSTIPIDTADVF-----NNDGETAVVMQTAIIPTYDQNPRCSEHPAKASA----GWSAWAQNEDVWRVDARAVDRVCTREAFGAHHIHGELACRRYQHGYGKPNQLRTEPIVQGNANEGERGSSAPSPR----------LESNMEAPAWEVLATSAMVEYFHTGHLADILSSSPWVAPSGGE 565
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BLAST of mRNA_L-elsbetiae_contig7101.15912.1 vs. uniprot
Match: D7FK45_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FK45_ECTSI)

HSP 1 Score: 104 bits (260), Expect = 1.360e-22
Identity = 51/112 (45.54%), Postives = 72/112 (64.29%), Query Frame = 1 
Query:   19 TLPDIERCVIRVVVDGVVASTLPVDQAFSAAAVQD--NSDNGLVVDINTLFVPAYEKRKRCAEHPAKAATAAVTGGGGWVGDEDAWRLESRAIDKICTRELFGAHYIHGELA 348
            +L D +RCVIR VVDG+ +S+ P+D       ++D  N+D    V +    VP Y+    C+EHPA+A    + G   W  DED WRL++RA+D++CT+E FGAH+IHGELA
Sbjct:  352 SLADYDRCVIRAVVDGMTSSSTPID-------IEDVFNNDGEAAVVMQMDIVPTYDHNPHCSEHPARA----LAGWSAWAQDEDVWRLDARAVDRVCTQEAFGAHHIHGELA 452
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig7101.15912.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5JH46_9PHAE4.780e-4044.39Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FK45_ECTSI1.360e-2245.54Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig7101contigL-elsbetiae_contig7101:6550..7620 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score102.8
Seed ortholog evalue1.8e-19
Seed eggNOG ortholog2880.D7FK45
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Methyltransferase domain
EggNOG OGs2E2B0@1,2S9J2@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons2
Model size594
Cds size594
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816788.7019644-CDS-L-elsbetiae_contig7101:6549..67491622816788.7019644-CDS-L-elsbetiae_contig7101:6549..6749Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7101 6550..6749 -
1691683814.2997863-CDS-L-elsbetiae_contig7101:6549..67491691683814.2997863-CDS-L-elsbetiae_contig7101:6549..6749Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7101 6550..6749 -
1622816788.7155874-CDS-L-elsbetiae_contig7101:7226..76201622816788.7155874-CDS-L-elsbetiae_contig7101:7226..7620Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7101 7227..7620 -
1691683814.3106349-CDS-L-elsbetiae_contig7101:7226..76201691683814.3106349-CDS-L-elsbetiae_contig7101:7226..7620Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7101 7227..7620 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig7101.15912.1prot_L-elsbetiae_contig7101.15912.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig7101 6550..7620 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig7101.15912.1

>prot_L-elsbetiae_contig7101.15912.1 ID=prot_L-elsbetiae_contig7101.15912.1|Name=mRNA_L-elsbetiae_contig7101.15912.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=198bp
MKEAQHTLPDIERCVIRVVVDGVVASTLPVDQAFSAAAVQDNSDNGLVVD
INTLFVPAYEKRKRCAEHPAKAATAAVTGGGGWVGDEDAWRLESRAIDKI
CTRELFGAHYIHGELACRRALSGRDDIEQDSSEAEAGREESAPPPRAATQ
PPPTPDLESKGPGWGVLATTGTVEYFHTGNLVDPLSALPWKATAKEER
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mRNA from alignment at L-elsbetiae_contig7101:6550..7620-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig7101.15912.1 ID=mRNA_L-elsbetiae_contig7101.15912.1|Name=mRNA_L-elsbetiae_contig7101.15912.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1071bp|location=Sequence derived from alignment at L-elsbetiae_contig7101:6550..7620- (Laminarionema elsbetiae ELsaHSoW15)
ATGAAAGAAGCGCAACACACGCTCCCAGATATTGAACGTTGCGTGATTCG
TGTGGTGGTGGACGGCGTGGTTGCCTCAACTCTACCGGTCGATCAGGCCT
TTTCTGCGGCCGCCGTCCAAGATAACAGCGATAACGGGTTGGTGGTGGAC
ATCAATACCCTCTTCGTTCCCGCCTACGAAAAACGAAAGCGCTGCGCCGA
ACACCCAGCAAAAGCAGCGACAGCGGCAGTGACGGGTGGAGGCGGCTGGG
TCGGCGATGAAGACGCTTGGCGCCTGGAATCAAGGGCCATCGACAAGATT
TGCACCCGGGAGTTGTTTGGCGCCCACTACATACACGGCGAGCTGGCGTG
CCGCAGGGCCCTAAGCGGCCGTGACGATATCGAACAGGATAGCAGTTAAG
AATCATCCCGTTGTATCTCTAGTGGAGGTCTTGTAAGGTATTTATCAATA
TATGAAAAAAAATGTCGCTTCTTCATTTCGCGCTTAATTTACTTCCAACC
TCACCAACCCTTCGAGATGTAGACTAGTAACTTAGGAAGTGTTATTGTTG
TTGTTGTTTCTCACACTAGCTCTCTAGTCCAAAACATCCTTCGGGGCCCG
TGGTCACAAACCGAGGCACACTCGACGCCGCGGAAGAAAAATAAAACAAA
GTATGGTATATACGCGACCGGTGGTACTAAACTGGACCCCGGGGAGTCTT
GCGTCTCGCCAGCACAAAATCGAAGGTATAAATAGTACATACACTTCGGA
AGAGAAAATAAAAATAAAGTTTGAAAAATCAAACCAAACTGCACTGTGCT
CGCTGTCAGCACTTGTCTACTTTCTTTCGACCAGAGCTAATAATCCTTCA
TCGGCAACAACGGTGATCCAGGCGAGGCAGAAGCGGGGAGAGAGGAGTCG
GCACCACCACCTCGAGCCGCAACACAACCGCCACCAACACCCGATCTGGA
ATCAAAGGGACCGGGATGGGGAGTGCTGGCGACTACTGGAACTGTCGAAT
ACTTCCACACCGGCAACTTAGTGGACCCCTTGTCGGCATTACCCTGGAAG
GCGACGGCGAAAGAAGAACGC
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Coding sequence (CDS) from alignment at L-elsbetiae_contig7101:6550..7620-

>mRNA_L-elsbetiae_contig7101.15912.1 ID=mRNA_L-elsbetiae_contig7101.15912.1|Name=mRNA_L-elsbetiae_contig7101.15912.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1188bp|location=Sequence derived from alignment at L-elsbetiae_contig7101:6550..7620- (Laminarionema elsbetiae ELsaHSoW15)
ATGAAAGAAGCGCAACACACGCTCCCAGATATTGAACGTTGCGTGATTCG
TGTGGTGGTGGACGGCGTGGTTGCCTCAACTCTACCGGTCGATCAGGCCT
TTTCTGCGGCCGCCGTCCAAGATAACAGCGATAACGGGTTGGTGGTGGAC
ATCAATACCCTCTTCGTTCCCGCCTACGAAAAACGAAAGCGCTGCGCCGA
ACACCCAGCAAAAGCAGCGACAGCGGCAGTGACGGGTGGAGGCGGCTGGG
TCGGCGATGAAGACGCTTGGCGCCTGGAATCAAGGGCCATCGACAAGATT
TGCACCCGGGAGTTGTTTGGCGCCCACTACATACACGGCGAGCTGGCGTG
CCGCAGGGCCCTAAGCGGCCGTGACGATATCGAACAGGATAGCAATGAAA
GAAGCGCAACACACGCTCCCAGATATTGAACGTTGCGTGATTCGTGTGGT
GGTGGACGGCGTGGTTGCCTCAACTCTACCGGTCGATCAGGCCTTTTCTG
CGGCCGCCGTCCAAGATAACAGCGATAACGGGTTGGTGGTGGACATCAAT
ACCCTCTTCGTTCCCGCCTACGAAAAACGAAAGCGCTGCGCCGAACACCC
AGCAAAAGCAGCGACAGCGGCAGTGACGGGTGGAGGCGGCTGGGTCGGCG
ATGAAGACGCTTGGCGCCTGGAATCAAGGGCCATCGACAAGATTTGCACC
CGGGAGTTGTTTGGCGCCCACTACATACACGGCGAGCTGGCGTGCCGCAG
GGCCCTAAGCGGCCGTGACGATATCGAACAGGATAGCAGCGAGGCAGAAG
CGGGGAGAGAGGAGTCGGCACCACCACCTCGAGCCGCAACACAACCGCCA
CCAACACCCGATCTGGAATCAAAGGGACCGGGATGGGGAGTGCTGGCGAC
TACTGGAACTGTCGAATACTTCCACACCGGCAACTTAGTGGACCCCTTGT
CGGCATTACCCTGGAAGGCGACGGCGAAAGAAGAACGCGCGAGGCAGAAG
CGGGGAGAGAGGAGTCGGCACCACCACCTCGAGCCGCAACACAACCGCCA
CCAACACCCGATCTGGAATCAAAGGGACCGGGATGGGGAGTGCTGGCGAC
TACTGGAACTGTCGAATACTTCCACACCGGCAACTTAGTGGACCCCTTGT
CGGCATTACCCTGGAAGGCGACGGCGAAAGAAGAACGC
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