mRNA_L-elsbetiae_contig7051.15853.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig7051.15853.1
Unique NamemRNA_L-elsbetiae_contig7051.15853.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig7051.15853.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig7051contigL-elsbetiae_contig7051:3818..4806 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Exons2
Model size409
Cds size321
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig7051.15853.1prot_L-elsbetiae_contig7051.15853.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig7051 3904..4806 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816782.758605-UTR-L-elsbetiae_contig7051:3817..39031622816782.758605-UTR-L-elsbetiae_contig7051:3817..3903Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig7051 3818..3903 +
1691683809.6227624-UTR-L-elsbetiae_contig7051:3817..39031691683809.6227624-UTR-L-elsbetiae_contig7051:3817..3903Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig7051 3818..3903 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816782.7684455-CDS-L-elsbetiae_contig7051:3903..41581622816782.7684455-CDS-L-elsbetiae_contig7051:3903..4158Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7051 3904..4158 +
1691683809.6336582-CDS-L-elsbetiae_contig7051:3903..41581691683809.6336582-CDS-L-elsbetiae_contig7051:3903..4158Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7051 3904..4158 +
1622816782.7810621-CDS-L-elsbetiae_contig7051:4740..48061622816782.7810621-CDS-L-elsbetiae_contig7051:4740..4806Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7051 4741..4806 +
1691683809.6507359-CDS-L-elsbetiae_contig7051:4740..48061691683809.6507359-CDS-L-elsbetiae_contig7051:4740..4806Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7051 4741..4806 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig7051.15853.1

>prot_L-elsbetiae_contig7051.15853.1 ID=prot_L-elsbetiae_contig7051.15853.1|Name=mRNA_L-elsbetiae_contig7051.15853.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=107bp
MKLFSLLALLAFFALTTASSNTANQSTIDTASGPPAVCYETSSLEWWLQT
HMCFCPEHETCPDLVSDAPVPDHCGPVATAGCADNENTRLPCTGNFSSVN
DDDAPSA
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mRNA from alignment at L-elsbetiae_contig7051:3818..4806+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig7051.15853.1 ID=mRNA_L-elsbetiae_contig7051.15853.1|Name=mRNA_L-elsbetiae_contig7051.15853.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=989bp|location=Sequence derived from alignment at L-elsbetiae_contig7051:3818..4806+ (Laminarionema elsbetiae ELsaHSoW15)
AGAGTCGAACAAAACAGCGGAACTACGTACGTACTTCATACTAAGCGATT
TCTGGAGGATTTTGCGCACTACGGAGAGGCTTTCCCATGAAGCTCTTCTC
GCTTCTAGCCCTCTTGGCGTTTTTCGCCTTGACCACGGCCAGTAGCAACA
CGGCCAACCAAAGCACGATCGATACCGCTTCTGGGCCACCAGCCGTGTGC
TATGAAACGTCAAGCCTCGAGTGGTGGCTTCAAACACACATGTGCTTCTG
CCCCGAGCACGAGACCTGCCCCGACTTAGTCAGCGATGCCCCAGTGCCCG
ACCACTGCGGCCCTGTTGCGACTGCTGGCTGCGCCGATAATGTGAGTTGC
AGGCATATCGCTTAATTTAGAATTCTCCCCCCCCCCCCCCCCCTTCNNNN
NNNNNNAGTTTTTGTAGAGAGAGAGAAGAACTGCTGCTGCTGCTGCTGCT
TGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTG
CTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGTGTCATAGAAGTATGAA
GTGCAGGTGTAATATTTGAACGGAACGGGGCTTATAATTTAAACCAGAGG
CTCATATTGTGGTCTTGCAGCCACATGTTAATACAAGTAGATGAATGTAA
GCGTCTACCTTACATCTACTATCCCCACTCAACATGATGTCGTTGGTTTT
CCATACCATGTAATCACTCAATCTGCTTACCACCGTTGATAGTATCCTTC
CGAGCCAATTTTGTTTTGCCTACCAACAGTAGTTTCTCCCTCGTGTTACT
TACTTTTTTCAATTTATTTTGTGCCTGCCTTCTGCCGTCCTTTCGTTGCC
TCCAACCCCGACGCGTCGGCCACCGCAATCGCCTGACGGTGCCCCCCCTG
CCTTCGGCTACCTGGGGGTGAAGGAGAACACTCGCTTACCGTGCACCGGA
AACTTCTCGAGCGTGAATGACGACGATGCTCCTTCTGCA
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Coding sequence (CDS) from alignment at L-elsbetiae_contig7051:3818..4806+

>mRNA_L-elsbetiae_contig7051.15853.1 ID=mRNA_L-elsbetiae_contig7051.15853.1|Name=mRNA_L-elsbetiae_contig7051.15853.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=642bp|location=Sequence derived from alignment at L-elsbetiae_contig7051:3818..4806+ (Laminarionema elsbetiae ELsaHSoW15)
ATGAAGCTCTTCTCGCTTCTAGCCCTCTTGGCGTTTTTCGCCTTGACCAC
GGCCAGTAGCAACACGGCCAACCAAAGCACGATCGATACCGCTTCTGGGC
CACCAGCCGTGTGCTATGAAACGTCAAGCCTCGAGTGGTGGCTTCAAACA
CACATGTGCTTCTGCCCCGAGCACGAGACCTGCCCCGACTTAGTCAGCGA
TGCCCCAGTGCCCGACCACTGCGGCCCTGTTGCGACTGCTGGCTGCGCCG
ATAATATGAAGCTCTTCTCGCTTCTAGCCCTCTTGGCGTTTTTCGCCTTG
ACCACGGCCAGTAGCAACACGGCCAACCAAAGCACGATCGATACCGCTTC
TGGGCCACCAGCCGTGTGCTATGAAACGTCAAGCCTCGAGTGGTGGCTTC
AAACACACATGTGCTTCTGCCCCGAGCACGAGACCTGCCCCGACTTAGTC
AGCGATGCCCCAGTGCCCGACCACTGCGGCCCTGTTGCGACTGCTGGCTG
CGCCGATAATGAGAACACTCGCTTACCGTGCACCGGAAACTTCTCGAGCG
TGAATGACGACGATGCTCCTTCTGCAGAGAACACTCGCTTACCGTGCACC
GGAAACTTCTCGAGCGTGAATGACGACGATGCTCCTTCTGCA
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