mRNA_L-elsbetiae_contig1183.1577.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig1183.1577.1
Unique NamemRNA_L-elsbetiae_contig1183.1577.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig1183.1577.1 vs. uniprot
Match: A0A6H5K5N3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K5N3_9PHAE)

HSP 1 Score: 53.1 bits (126), Expect = 7.450e-5
Identity = 22/35 (62.86%), Postives = 26/35 (74.29%), Query Frame = 2 
Query:   20 EFCIQHAHEGMVNVVSKRCRHPTCTKRAAFGLEGS 124
            EFC QH  + MVNVVSKRC HP CTK+ ++G  GS
Sbjct:   23 EFCSQHKQQDMVNVVSKRCGHPGCTKQPSYGRAGS 57
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig1183.1577.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5K5N3_9PHAE7.450e-562.86Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig1183contigL-elsbetiae_contig1183:6437..8687 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size1880
Cds size1764
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig1183.1577.1prot_L-elsbetiae_contig1183.1577.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig1183 6914..8677 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815385.7561822-UTR-L-elsbetiae_contig1183:6436..65161622815385.7561822-UTR-L-elsbetiae_contig1183:6436..6516Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1183 6437..6516 -
1691682872.506235-UTR-L-elsbetiae_contig1183:6436..65161691682872.506235-UTR-L-elsbetiae_contig1183:6436..6516Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1183 6437..6516 -
1622815385.7659302-UTR-L-elsbetiae_contig1183:6887..69131622815385.7659302-UTR-L-elsbetiae_contig1183:6887..6913Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1183 6888..6913 -
1691682872.515977-UTR-L-elsbetiae_contig1183:6887..69131691682872.515977-UTR-L-elsbetiae_contig1183:6887..6913Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1183 6888..6913 -
1622815385.784116-UTR-L-elsbetiae_contig1183:8677..86871622815385.784116-UTR-L-elsbetiae_contig1183:8677..8687Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1183 8678..8687 -
1691682872.5326712-UTR-L-elsbetiae_contig1183:8677..86871691682872.5326712-UTR-L-elsbetiae_contig1183:8677..8687Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1183 8678..8687 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815385.7750187-CDS-L-elsbetiae_contig1183:6913..86771622815385.7750187-CDS-L-elsbetiae_contig1183:6913..8677Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1183 6914..8677 -
1691682872.5243678-CDS-L-elsbetiae_contig1183:6913..86771691682872.5243678-CDS-L-elsbetiae_contig1183:6913..8677Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1183 6914..8677 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig1183.1577.1

>prot_L-elsbetiae_contig1183.1577.1 ID=prot_L-elsbetiae_contig1183.1577.1|Name=mRNA_L-elsbetiae_contig1183.1577.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=588bp
MQVEFCIQHAHEGMVNVVSKRCRHPTCTKRAAFGLEGSTKREFCKQHAPE
GMMNVGYRRCGHPGCTIMPSLGVKGTTNAAFCAQHAQEGMVNVLGKRRCG
HPTCTKLPSYGLEGTNKREFCAQHAQKGMVNVTSGRCGHPTCFKHAAFGL
EGSKKREFCAQHAQEGMVDVVSKRCGHPTCTRHPSYCTGGTKKVEFCAQH
AHEGMVRVGSKKRCGHQECSKTPTWGVDGTTNAEYCKSHAKEEMVDVRTK
RCGHPNCKTKPTHGLEGTKKAVFCAKHAHDGMVDIIHKRCRYPGCTTRAN
HGVEGSKKTEFCRSHALDGMVNVVNKRCVAPACIKQPSFGVEGTKKIEFC
SQHAKDGMINLSSSRCAHQSCKKSASHSVPGSRTREFCAQHAGQGMINVI
TRRCAHPSCTKIPSYGIDGTKRAEYCARHAHDGLVNVISKRCAHRGCRKH
PCYGFESRRIKECCAQHAEDGMSFCRTWNRPSSSRENRAHCGVGGKSGTR
PAIAMGEAEASLVAEGRSSRASSKRARLAVDHDSTRVVDPDAVRSEAMEG
IVVDRVEGLLSGPGEGGVRQQAPQGSSASEAVVKGSS*
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mRNA from alignment at L-elsbetiae_contig1183:6437..8687-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig1183.1577.1 ID=mRNA_L-elsbetiae_contig1183.1577.1|Name=mRNA_L-elsbetiae_contig1183.1577.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=2251bp|location=Sequence derived from alignment at L-elsbetiae_contig1183:6437..8687- (Laminarionema elsbetiae ELsaHSoW15)
GGAAGACACCATGCAGGTGGAGTTCTGCATCCAGCATGCTCACGAGGGAA
TGGTGAACGTCGTCAGCAAGAGGTGCCGGCATCCAACCTGCACCAAGCGC
GCGGCATTCGGCCTGGAAGGCAGCACGAAGCGAGAGTTTTGCAAGCAGCA
TGCGCCGGAGGGAATGATGAACGTCGGGTATAGGAGGTGCGGGCATCCAG
GTTGTACGATCATGCCATCCTTGGGCGTGAAAGGCACCACGAATGCGGCG
TTCTGCGCCCAGCATGCTCAGGAGGGAATGGTTAACGTCTTAGGCAAGAG
GAGGTGCGGGCATCCAACTTGTACCAAGCTACCGTCGTACGGCCTGGAAG
GCACCAATAAACGCGAGTTCTGCGCCCAGCATGCTCAGAAGGGAATGGTT
AACGTCACCAGTGGGAGGTGCGGGCATCCAACCTGCTTCAAGCACGCAGC
ATTCGGCCTGGAAGGCTCCAAGAAGAGGGAGTTCTGCGCCCAGCATGCTC
AGGAGGGAATGGTCGACGTCGTCAGCAAGAGGTGCGGGCACCCAACTTGC
ACCAGGCACCCATCGTACTGCACCGGGGGCACTAAGAAGGTGGAGTTCTG
CGCCCAGCATGCTCACGAGGGAATGGTAAGGGTCGGAAGCAAGAAGAGGT
GCGGCCATCAAGAGTGCAGCAAAACCCCGACGTGGGGCGTTGATGGAACG
ACAAATGCAGAATATTGCAAGTCCCATGCAAAGGAGGAGATGGTTGACGT
CCGCACAAAAAGGTGCGGGCATCCAAATTGTAAGACTAAACCAACACATG
GCTTAGAAGGGACCAAAAAAGCGGTTTTCTGCGCGAAGCACGCTCATGAC
GGAATGGTCGACATCATCCACAAGAGATGTCGATATCCTGGGTGCACCAC
CCGGGCAAATCATGGCGTTGAAGGCAGTAAAAAAACTGAGTTCTGCCGCA
GCCACGCGCTCGATGGAATGGTAAACGTCGTCAACAAGAGGTGTGTTGCC
CCAGCCTGTATCAAACAGCCGTCATTCGGTGTGGAAGGCACCAAGAAGAT
CGAGTTCTGCTCCCAACATGCCAAAGACGGAATGATCAATTTGTCAAGCT
CGAGGTGCGCTCACCAAAGCTGCAAAAAGTCTGCGTCGCATTCTGTGCCT
GGGAGCCGCACCAGGGAGTTCTGCGCTCAGCACGCAGGACAAGGAATGAT
CAACGTGATTACTAGGAGGTGCGCCCACCCAAGTTGCACCAAAATACCGT
CGTACGGCATAGACGGTACCAAGAGAGCCGAGTATTGCGCCCGCCATGCC
CACGACGGTTTGGTCAACGTAATCAGTAAGAGATGCGCACACAGAGGCTG
TCGAAAACATCCGTGTTACGGGTTCGAATCACGCCGCATCAAGGAGTGTT
GTGCCCAGCATGCAGAGGACGGAATGTCATTTTGTCGGACGTGGAACCGG
CCCTCCAGCTCCCGTGAAAACAGGGCCCATTGTGGAGTGGGTGGGAAGTC
TGGGACCCGCCCTGCTATCGCCATGGGTGAAGCAGAGGCGTCTCTTGTAG
CGGAAGGGAGAAGTTCTCGAGCAAGCAGCAAGCGGGCCCGCCTTGCGGTC
GACCACGATAGCACGCGCGTCGTTGACCCGGACGCAGTGAGAAGTGAGGC
TATGGAAGGAATAGTGGTCGACCGCGTCGAGGGTCTATTGTCGGGGCCAG
GCGAAGGAGGGGTAAGGCAGCAAGCTCCACAAGGCAGCAGTGCATCGGAG
GCAGTGGTCAAGGGATCGTCCTAACACCAAAGGGGCATTGGAAGTTGTAG
GTAAGTCGATGGTGTGCGTGTTGTTTGCTGTTGCTGCTGCTCTTGTTAGC
CTTTCGTGCGCGTCGCTAAACCACAGCGAAAGTGCGATCGAAGCCGCCCT
CGAGTGGTAATGGAATCGAGTTCAGTTGAGTGTAGCCCCTACCGAGTTGA
TTGTGGTACGTTGCTGTCAGTTTCGGCGTTTGTCAGCGACACGTTCGACG
TTCAAAATACACCCGGCTCTTCATCGCCAGTATTTGTCTACAGCACCGCA
ACTTTCGGCACGCTGCCCATCTAGAAAATATATGCGCCACACTGCTTTGC
TTGCTTCATGGTTTAGGTTTGGCGTGTTTCCCACTACCGAGTTCGTTTGT
GCTCTTGTACCACCGCAGCAGATACTTTCGATTGGACTTTGCAGCGATGG
TTATTCTTGTATCTTCCAAACGCCCTTCTTACTTAGAGAACGGCGGAGGA
G
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Coding sequence (CDS) from alignment at L-elsbetiae_contig1183:6437..8687-

>mRNA_L-elsbetiae_contig1183.1577.1 ID=mRNA_L-elsbetiae_contig1183.1577.1|Name=mRNA_L-elsbetiae_contig1183.1577.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=3528bp|location=Sequence derived from alignment at L-elsbetiae_contig1183:6437..8687- (Laminarionema elsbetiae ELsaHSoW15)
ATGCAGGTGGAGTTCTGCATCCAGCATGCTCACGAGGGAATGGTGAACGT
CGTCAGCAAGAGGTGCCGGCATCCAACCTGCACCAAGCGCGCGGCATTCG
GCCTGGAAGGCAGCACGAAGCGAGAGTTTTGCAAGCAGCATGCGCCGGAG
GGAATGATGAACGTCGGGTATAGGAGGTGCGGGCATCCAGGTTGTACGAT
CATGCCATCCTTGGGCGTGAAAGGCACCACGAATGCGGCGTTCTGCGCCC
AGCATGCTCAGGAGGGAATGGTTAACGTCTTAGGCAAGAGGAGGTGCGGG
CATCCAACTTGTACCAAGCTACCGTCGTACGGCCTGGAAGGCACCAATAA
ACGCGAGTTCTGCGCCCAGCATGCTCAGAAGGGAATGGTTAACGTCACCA
GTGGGAGGTGCGGGCATCCAACCTGCTTCAAGCACGCAGCATTCGGCCTG
GAAGGCTCCAAGAAGAGGGAGTTCTGCGCCCAGCATGCTCAGGAGGGAAT
GGTCGACGTCGTCAGCAAGAGGTGCGGGCACCCAACTTGCACCAGGCACC
CATCGTACTGCACCGGGGGCACTAAGAAGGTGGAGTTCTGCGCCCAGCAT
GCTCACGAGGGAATGGTAAGGGTCGGAAGCAAGAAGAGGTGCGGCCATCA
AGAGTGCAGCAAAACCCCGACGTGGGGCGTTGATGGAACGACAAATGCAG
AATATTGCAAGTCCCATGCAAAGGAGGAGATGGTTGACGTCCGCACAAAA
AGGTGCGGGCATCCAAATTGTAAGACTAAACCAACACATGGCTTAGAAGG
GACCAAAAAAGCGGTTTTCTGCGCGAAGCACGCTCATGACGGAATGGTCG
ACATCATCCACAAGAGATGTCGATATCCTGGGTGCACCACCCGGGCAAAT
CATGGCGTTGAAGGCAGTAAAAAAACTGAGTTCTGCCGCAGCCACGCGCT
CGATGGAATGGTAAACGTCGTCAACAAGAGGTGTGTTGCCCCAGCCTGTA
TCAAACAGCCGTCATTCGGTGTGGAAGGCACCAAGAAGATCGAGTTCTGC
TCCCAACATGCCAAAGACGGAATGATCAATTTGTCAAGCTCGAGGTGCGC
TCACCAAAGCTGCAAAAAGTCTGCGTCGCATTCTGTGCCTGGGAGCCGCA
CCAGGGAGTTCTGCGCTCAGCACGCAGGACAAGGAATGATCAACGTGATT
ACTAGGAGGTGCGCCCACCCAAGTTGCACCAAAATACCGTCGTACGGCAT
AGACGGTACCAAGAGAGCCGAGTATTGCGCCCGCCATGCCCACGACGGTT
TGGTCAACGTAATCAGTAAGAGATGCGCACACAGAGGCTGTCGAAAACAT
CCGTGTTACGGGTTCGAATCACGCCGCATCAAGGAGTGTTGTGCCCAGCA
TGCAGAGGACGGAATGTCATTTTGTCGGACGTGGAACCGGCCCTCCAGCT
CCCGTGAAAACAGGGCCCATTGTGGAGTGGGTGGGAAGTCTGGGACCCGC
CCTGCTATCGCCATGGGTGAAGCAGAGGCGTCTCTTGTAGCGGAAGGGAG
AAGTTCTCGAGCAAGCAGCAAGCGGGCCCGCCTTGCGGTCGACCACGATA
GCACGCGCGTCGTTGACCCGGACGCAGTGAGAAGTGAGGCTATGGAAGGA
ATAGTGGTCGACCGCGTCGAGGGTCTATTGTCGGGGCCAGGCGAAGGAGG
GGTAAGGCAGCAAGCTCCACAAGGCAGCAGTGCATCGGAGGCAGTGGTCA
AGGGATCGTCCTAAATGCAGGTGGAGTTCTGCATCCAGCATGCTCACGAG
GGAATGGTGAACGTCGTCAGCAAGAGGTGCCGGCATCCAACCTGCACCAA
GCGCGCGGCATTCGGCCTGGAAGGCAGCACGAAGCGAGAGTTTTGCAAGC
AGCATGCGCCGGAGGGAATGATGAACGTCGGGTATAGGAGGTGCGGGCAT
CCAGGTTGTACGATCATGCCATCCTTGGGCGTGAAAGGCACCACGAATGC
GGCGTTCTGCGCCCAGCATGCTCAGGAGGGAATGGTTAACGTCTTAGGCA
AGAGGAGGTGCGGGCATCCAACTTGTACCAAGCTACCGTCGTACGGCCTG
GAAGGCACCAATAAACGCGAGTTCTGCGCCCAGCATGCTCAGAAGGGAAT
GGTTAACGTCACCAGTGGGAGGTGCGGGCATCCAACCTGCTTCAAGCACG
CAGCATTCGGCCTGGAAGGCTCCAAGAAGAGGGAGTTCTGCGCCCAGCAT
GCTCAGGAGGGAATGGTCGACGTCGTCAGCAAGAGGTGCGGGCACCCAAC
TTGCACCAGGCACCCATCGTACTGCACCGGGGGCACTAAGAAGGTGGAGT
TCTGCGCCCAGCATGCTCACGAGGGAATGGTAAGGGTCGGAAGCAAGAAG
AGGTGCGGCCATCAAGAGTGCAGCAAAACCCCGACGTGGGGCGTTGATGG
AACGACAAATGCAGAATATTGCAAGTCCCATGCAAAGGAGGAGATGGTTG
ACGTCCGCACAAAAAGGTGCGGGCATCCAAATTGTAAGACTAAACCAACA
CATGGCTTAGAAGGGACCAAAAAAGCGGTTTTCTGCGCGAAGCACGCTCA
TGACGGAATGGTCGACATCATCCACAAGAGATGTCGATATCCTGGGTGCA
CCACCCGGGCAAATCATGGCGTTGAAGGCAGTAAAAAAACTGAGTTCTGC
CGCAGCCACGCGCTCGATGGAATGGTAAACGTCGTCAACAAGAGGTGTGT
TGCCCCAGCCTGTATCAAACAGCCGTCATTCGGTGTGGAAGGCACCAAGA
AGATCGAGTTCTGCTCCCAACATGCCAAAGACGGAATGATCAATTTGTCA
AGCTCGAGGTGCGCTCACCAAAGCTGCAAAAAGTCTGCGTCGCATTCTGT
GCCTGGGAGCCGCACCAGGGAGTTCTGCGCTCAGCACGCAGGACAAGGAA
TGATCAACGTGATTACTAGGAGGTGCGCCCACCCAAGTTGCACCAAAATA
CCGTCGTACGGCATAGACGGTACCAAGAGAGCCGAGTATTGCGCCCGCCA
TGCCCACGACGGTTTGGTCAACGTAATCAGTAAGAGATGCGCACACAGAG
GCTGTCGAAAACATCCGTGTTACGGGTTCGAATCACGCCGCATCAAGGAG
TGTTGTGCCCAGCATGCAGAGGACGGAATGTCATTTTGTCGGACGTGGAA
CCGGCCCTCCAGCTCCCGTGAAAACAGGGCCCATTGTGGAGTGGGTGGGA
AGTCTGGGACCCGCCCTGCTATCGCCATGGGTGAAGCAGAGGCGTCTCTT
GTAGCGGAAGGGAGAAGTTCTCGAGCAAGCAGCAAGCGGGCCCGCCTTGC
GGTCGACCACGATAGCACGCGCGTCGTTGACCCGGACGCAGTGAGAAGTG
AGGCTATGGAAGGAATAGTGGTCGACCGCGTCGAGGGTCTATTGTCGGGG
CCAGGCGAAGGAGGGGTAAGGCAGCAAGCTCCACAAGGCAGCAGTGCATC
GGAGGCAGTGGTCAAGGGATCGTCCTAA
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